data_38T
# 
_chem_comp.id                                    38T 
_chem_comp.name                                  5-methyluridine 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H14 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-08 
_chem_comp.pdbx_modified_date                    2014-07-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        258.228 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     38T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4QSW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
38T OAC   OAC   O 0 1 N N N 28.334 44.472 -12.704 0.223  -1.043 -1.508 OAC   38T 1  
38T CAM   CAM   C 0 1 N N N 27.317 44.579 -12.007 1.135  -0.633 -0.816 CAM   38T 2  
38T NAI   NAI   N 0 1 N N N 26.294 43.725 -12.328 2.404  -0.950 -1.134 NAI   38T 3  
38T CAL   CAL   C 0 1 N N N 25.067 43.731 -11.644 3.426  -0.503 -0.377 CAL   38T 4  
38T OAB   OAB   O 0 1 N N N 24.275 42.890 -12.040 4.574  -0.789 -0.664 OAB   38T 5  
38T CAK   CAK   C 0 1 N N N 24.857 44.622 -10.604 3.152  0.302  0.756  CAK   38T 6  
38T CAA   CAA   C 0 1 N N N 23.652 44.662 -9.846  4.277  0.814  1.618  CAA   38T 7  
38T CAG   CAG   C 0 1 N N N 25.916 45.506 -10.286 1.870  0.605  1.051  CAG   38T 8  
38T NAR   NAR   N 0 1 N N N 27.146 45.473 -10.997 0.862  0.135  0.255  NAR   38T 9  
38T "C1'" "C1'" C 0 1 N N R 28.249 46.418 -10.673 -0.529 0.469  0.572  "C1'" 38T 10 
38T "O4'" "O4'" O 0 1 N N N 28.162 46.992 -9.301  -1.325 -0.733 0.666  "O4'" 38T 11 
38T "C4'" "C4'" C 0 1 N N R 27.887 48.434 -9.448  -2.691 -0.300 0.482  "C4'" 38T 12 
38T "C5'" "C5'" C 0 1 N N N 26.943 48.961 -8.379  -3.569 -1.477 0.052  "C5'" 38T 13 
38T "O5'" "O5'" O 0 1 N N N 25.695 48.338 -8.688  -3.655 -2.422 1.120  "O5'" 38T 14 
38T "C3'" "C3'" C 0 1 N N S 27.289 48.576 -10.881 -2.621 0.758  -0.642 "C3'" 38T 15 
38T "O3'" "O3'" O 0 1 N N N 27.389 49.956 -11.395 -3.544 1.819  -0.389 "O3'" 38T 16 
38T "C2'" "C2'" C 0 1 N N R 28.185 47.621 -11.654 -1.166 1.275  -0.581 "C2'" 38T 17 
38T "O2'" "O2'" O 0 1 N N N 29.509 48.223 -11.896 -1.144 2.673  -0.286 "O2'" 38T 18 
38T H1    H1    H 0 1 N N N 26.426 43.074 -13.076 2.583  -1.502 -1.911 H1    38T 19 
38T H2    H2    H 0 1 N N N 23.725 45.449 -9.081  5.229  0.465  1.219  H2    38T 20 
38T H3    H3    H 0 1 N N N 22.806 44.878 -10.514 4.262  1.904  1.624  H3    38T 21 
38T H4    H4    H 0 1 N N N 23.494 43.689 -9.357  4.152  0.444  2.636  H4    38T 22 
38T H5    H5    H 0 1 N N N 25.786 46.220 -9.486  1.642  1.217  1.911  H5    38T 23 
38T H6    H6    H 0 1 N N N 29.217 45.911 -10.799 -0.580 1.031  1.505  H6    38T 24 
38T H7    H7    H 0 1 N N N 28.831 48.998 -9.404  -3.075 0.144  1.400  H7    38T 25 
38T H8    H8    H 0 1 N N N 27.287 48.672 -7.375  -4.567 -1.115 -0.194 H8    38T 26 
38T H9    H9    H 0 1 N N N 26.859 50.056 -8.436  -3.131 -1.956 -0.824 H9    38T 27 
38T H10   H10   H 0 1 N N N 25.038 48.616 -8.060  -4.197 -3.197 0.917  H10   38T 28 
38T H11   H11   H 0 1 N N N 26.248 48.222 -10.891 -2.823 0.300  -1.610 H11   38T 29 
38T H12   H12   H 0 1 N N N 26.818 50.524 -10.891 -4.468 1.537  -0.357 H12   38T 30 
38T H13   H13   H 0 1 N N N 27.706 47.317 -12.596 -0.649 1.073  -1.519 H13   38T 31 
38T H14   H14   H 0 1 N N N 30.052 47.611 -12.379 -1.585 3.222  -0.949 H14   38T 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
38T OAC   CAM   DOUB N N 1  
38T NAI   CAM   SING N N 2  
38T NAI   CAL   SING N N 3  
38T OAB   CAL   DOUB N N 4  
38T CAM   NAR   SING N N 5  
38T "O2'" "C2'" SING N N 6  
38T "C2'" "C3'" SING N N 7  
38T "C2'" "C1'" SING N N 8  
38T CAL   CAK   SING N N 9  
38T "O3'" "C3'" SING N N 10 
38T NAR   "C1'" SING N N 11 
38T NAR   CAG   SING N N 12 
38T "C3'" "C4'" SING N N 13 
38T "C1'" "O4'" SING N N 14 
38T CAK   CAG   DOUB N N 15 
38T CAK   CAA   SING N N 16 
38T "C4'" "O4'" SING N N 17 
38T "C4'" "C5'" SING N N 18 
38T "O5'" "C5'" SING N N 19 
38T NAI   H1    SING N N 20 
38T CAA   H2    SING N N 21 
38T CAA   H3    SING N N 22 
38T CAA   H4    SING N N 23 
38T CAG   H5    SING N N 24 
38T "C1'" H6    SING N N 25 
38T "C4'" H7    SING N N 26 
38T "C5'" H8    SING N N 27 
38T "C5'" H9    SING N N 28 
38T "O5'" H10   SING N N 29 
38T "C3'" H11   SING N N 30 
38T "O3'" H12   SING N N 31 
38T "C2'" H13   SING N N 32 
38T "O2'" H14   SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
38T SMILES           ACDLabs              12.01 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2O)CO"                                                                                             
38T InChI            InChI                1.03  "InChI=1S/C10H14N2O6/c1-4-2-12(10(17)11-8(4)16)9-7(15)6(14)5(3-13)18-9/h2,5-7,9,13-15H,3H2,1H3,(H,11,16,17)/t5-,6-,7-,9-/m1/s1" 
38T InChIKey         InChI                1.03  DWRXFEITVBNRMK-JXOAFFINSA-N                                                                                                     
38T SMILES_CANONICAL CACTVS               3.385 "CC1=CN([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)C(=O)NC1=O"                                                                           
38T SMILES           CACTVS               3.385 "CC1=CN([CH]2O[CH](CO)[CH](O)[CH]2O)C(=O)NC1=O"                                                                                 
38T SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O"                                                                         
38T SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)O"                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
38T "SYSTEMATIC NAME" ACDLabs              12.01 5-methyluridine                                                                                  
38T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
38T "Create component" 2014-07-08 RCSB 
38T "Initial release"  2014-07-23 RCSB 
# 
