data_23T
#

_chem_comp.id                                   23T
_chem_comp.name                                 "2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H17 N2 O13 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-07-11
_chem_comp.pdbx_modified_date                   2020-05-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     D3T
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       466.169
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    23T
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2HHW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
23T  PA      PA    P  0  1  N  N  S  128.876  -26.829  42.254   1.605  -1.481   0.040  PA      23T   1  
23T  O1A     O1A   O  0  1  N  N  N  129.722  -27.884  42.855   1.454  -0.572  -1.117  O1A     23T   2  
23T  O2A     O2A   O  0  1  N  N  N  127.819  -26.221  43.304   2.132  -2.915  -0.469  O2A     23T   3  
23T  "O5'"   O5*   O  0  1  N  N  N  128.014  -27.337  40.992   0.181  -1.661   0.770  "O5'"   23T   4  
23T  "C5'"   C5*   C  0  1  N  N  N  128.670  -27.973  39.892  -0.742  -2.103  -0.227  "C5'"   23T   5  
23T  "C4'"   C4*   C  0  1  N  N  S  128.308  -27.284  38.575  -2.122  -2.294   0.404  "C4'"   23T   6  
23T  "O4'"   O4*   O  0  1  N  N  N  126.889  -27.270  38.341  -2.712  -1.019   0.743  "O4'"   23T   7  
23T  "C1'"   C1*   C  0  1  N  N  R  126.579  -26.065  37.618  -4.132  -1.227   0.835  "C1'"   23T   8  
23T  N1      N1    N  0  1  N  N  N  125.817  -25.144  38.491  -4.842  -0.032   0.371  N1      23T   9  
23T  C6      C6    C  0  1  N  N  N  125.852  -25.274  39.885  -5.785   0.549   1.173  C6      23T  10  
23T  C2      C2    C  0  1  N  N  N  125.099  -24.095  37.905  -4.560   0.482  -0.840  C2      23T  11  
23T  O2      O2    O  0  1  N  N  N  125.047  -23.997  36.680  -3.719  -0.052  -1.537  O2      23T  12  
23T  N3      N3    N  0  1  N  N  N  124.431  -23.170  38.714  -5.198   1.578  -1.291  N3      23T  13  
23T  C4      C4    C  0  1  N  N  N  124.486  -23.300  40.108  -6.137   2.178  -0.533  C4      23T  14  
23T  O4      O4    O  0  1  N  N  N  123.932  -22.462  40.817  -6.714   3.170  -0.940  O4      23T  15  
23T  C5      C5    C  0  1  N  N  N  125.188  -24.351  40.686  -6.439   1.650   0.746  C5      23T  16  
23T  C5M     C5M   C  0  1  N  N  N  125.222  -24.502  42.209  -7.482   2.305   1.615  C5M     23T  17  
23T  "C2'"   C2*   C  0  1  N  N  N  127.933  -25.423  37.302  -4.481  -2.427  -0.066  "C2'"   23T  18  
23T  "C3'"   C3*   C  0  1  N  N  N  128.706  -25.810  38.561  -3.115  -2.893  -0.624  "C3'"   23T  19  
23T  O3A     O3A   O  0  1  N  N  N  129.729  -25.569  41.723   2.666  -0.858   1.079  O3A     23T  20  
23T  PB      PB    P  0  1  N  N  R  131.322  -25.436  41.934   3.855  -0.219   0.201  PB      23T  21  
23T  O1B     O1B   O  0  1  N  N  N  131.456  -24.215  40.892   3.279   0.557  -0.920  O1B     23T  22  
23T  O2B     O2B   O  0  1  N  N  N  131.772  -26.807  41.610   4.784  -1.397  -0.383  O2B     23T  23  
23T  O3B     O3B   O  0  1  N  N  N  131.202  -24.907  43.450   4.742   0.755   1.128  O3B     23T  24  
23T  PG      PG    P  0  1  N  N  N  132.076  -25.571  44.628   5.539   1.742   0.136  PG      23T  25  
23T  O1G     O1G   O  0  1  N  N  N  133.547  -24.931  44.491   6.131   2.982   0.976  O1G     23T  26  
23T  O2G     O2G   O  0  1  N  N  N  132.228  -27.133  44.269   4.615   2.247  -0.904  O2G     23T  27  
23T  O3G     O3G   O  0  1  N  N  N  131.473  -25.349  45.961   6.747   0.940  -0.562  O3G     23T  28  
23T  HO2A    HO2A  H  0  0  N  N  N  128.242  -26.101  44.146   2.216  -3.476   0.314  HO2A    23T  29  
23T  "H5'1"  1H5*  H  0  0  N  N  N  128.344  -29.023  39.844  -0.399  -3.050  -0.645  "H5'1"  23T  30  
23T  "H5'2"  2H5*  H  0  0  N  N  N  129.758  -27.915  40.040  -0.805  -1.358  -1.020  "H5'2"  23T  31  
23T  "H4'"   H4*   H  0  1  N  N  N  128.849  -27.864  37.813  -2.054  -2.930   1.287  "H4'"   23T  32  
23T  "H1'"   H1*   H  0  1  N  N  N  125.984  -26.273  36.716  -4.408  -1.445   1.867  "H1'"   23T  33  
23T  H6      H6    H  0  1  N  N  N  126.394  -26.091  40.338  -6.005   0.130   2.144  H6      23T  34  
23T  HN3     HN3   H  0  1  N  N  N  123.917  -22.419  38.299  -4.983   1.936  -2.167  HN3     23T  35  
23T  H5M1    1H5M  H  0  0  N  N  N  124.332  -24.024  42.645  -7.009   3.057   2.246  H5M1    23T  36  
23T  H5M2    2H5M  H  0  0  N  N  N  126.128  -24.020  42.605  -8.234   2.780   0.985  H5M2    23T  37  
23T  H5M3    3H5M  H  0  0  N  N  N  125.230  -25.570  42.472  -7.957   1.551   2.242  H5M3    23T  38  
23T  "H2'1"  1H2*  H  0  0  N  N  N  127.895  -24.343  37.098  -4.945  -3.221   0.519  "H2'1"  23T  39  
23T  "H2'2"  2H2*  H  0  0  N  N  N  128.389  -25.820  36.383  -5.139  -2.116  -0.878  "H2'2"  23T  40  
23T  "H3'1"  1H3*  H  0  0  N  N  N  129.785  -25.595  38.558  -3.051  -3.981  -0.638  "H3'1"  23T  41  
23T  "H3'2"  2H3*  H  0  0  N  N  N  128.398  -25.257  39.461  -2.940  -2.482  -1.619  "H3'2"  23T  42  
23T  HO2B    HO2B  H  0  0  N  N  N  131.868  -26.895  40.669   5.138  -1.876   0.378  HO2B    23T  43  
23T  HO1G    HO1G  H  0  0  N  N  N  133.754  -24.805  43.572   6.600   3.547   0.346  HO1G    23T  44  
23T  HO3G    HO3G  H  0  0  N  N  N  132.160  -25.301  46.616   7.324   0.629   0.149  HO3G    23T  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
23T  PA     O1A     DOUB  N  N   1  
23T  PA     O2A     SING  N  N   2  
23T  PA     "O5'"   SING  N  N   3  
23T  PA     O3A     SING  N  N   4  
23T  O2A    HO2A    SING  N  N   5  
23T  "O5'"  "C5'"   SING  N  N   6  
23T  "C5'"  "C4'"   SING  N  N   7  
23T  "C5'"  "H5'1"  SING  N  N   8  
23T  "C5'"  "H5'2"  SING  N  N   9  
23T  "C4'"  "O4'"   SING  N  N  10  
23T  "C4'"  "C3'"   SING  N  N  11  
23T  "C4'"  "H4'"   SING  N  N  12  
23T  "O4'"  "C1'"   SING  N  N  13  
23T  "C1'"  N1      SING  N  N  14  
23T  "C1'"  "C2'"   SING  N  N  15  
23T  "C1'"  "H1'"   SING  N  N  16  
23T  N1     C6      SING  N  N  17  
23T  N1     C2      SING  N  N  18  
23T  C6     C5      DOUB  N  N  19  
23T  C6     H6      SING  N  N  20  
23T  C2     O2      DOUB  N  N  21  
23T  C2     N3      SING  N  N  22  
23T  N3     C4      SING  N  N  23  
23T  N3     HN3     SING  N  N  24  
23T  C4     O4      DOUB  N  N  25  
23T  C4     C5      SING  N  N  26  
23T  C5     C5M     SING  N  N  27  
23T  C5M    H5M1    SING  N  N  28  
23T  C5M    H5M2    SING  N  N  29  
23T  C5M    H5M3    SING  N  N  30  
23T  "C2'"  "C3'"   SING  N  N  31  
23T  "C2'"  "H2'1"  SING  N  N  32  
23T  "C2'"  "H2'2"  SING  N  N  33  
23T  "C3'"  "H3'1"  SING  N  N  34  
23T  "C3'"  "H3'2"  SING  N  N  35  
23T  O3A    PB      SING  N  N  36  
23T  PB     O1B     DOUB  N  N  37  
23T  PB     O2B     SING  N  N  38  
23T  PB     O3B     SING  N  N  39  
23T  O2B    HO2B    SING  N  N  40  
23T  O3B    PG      SING  N  N  41  
23T  PG     O1G     SING  N  N  42  
23T  PG     O2G     DOUB  N  N  43  
23T  PG     O3G     SING  N  N  44  
23T  O1G    HO1G    SING  N  N  45  
23T  O3G    HO3G    SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
23T  SMILES_CANONICAL  CACTVS                3.341  "CC1=CN([C@H]2CC[C@@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O"  
23T  SMILES            CACTVS                3.341  "CC1=CN([CH]2CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O"  
23T  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)NC1=O)[C@H]2CC[C@H](O2)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O"  
23T  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)NC1=O)C2CCC(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O"  
23T  InChI             InChI                 1.03   "InChI=1S/C10H17N2O13P3/c1-6-4-12(10(14)11-9(6)13)8-3-2-7(23-8)5-22-27(18,19)25-28(20,21)24-26(15,16)17/h4,7-8H,2-3,5H2,1H3,(H,18,19)(H,20,21)(H,11,13,14)(H2,15,16,17)/t7-,8+/m0/s1"  
23T  InChIKey          InChI                 1.03   URGJWIFLBWJRMF-JGVFFNPUSA-N  
#
_pdbx_chem_comp_identifier.comp_id          23T
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.5.0
_pdbx_chem_comp_identifier.identifier       "(hydroxy-phosphonooxy-phosphoryl) [(2S,5R)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
23T  "Create component"    2006-07-11  RCSB  
23T  "Modify descriptor"   2011-06-04  RCSB  
23T  "Obsolete component"  2020-05-02  RCSB  
##
