data_0DT
# 
_chem_comp.id                                    0DT 
_chem_comp.name                                  
;2'-DEOXY-L-RIBO-FURANOSYL THYMIDINE-5'-MONOPHOSPHATE 
;
_chem_comp.type                                  "L-DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H15 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-07-27 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         DRT 
_chem_comp.formula_weight                        322.208 
_chem_comp.one_letter_code                       T 
_chem_comp.three_letter_code                     0DT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1FV8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0DT OP3    O3P    O 0 1 N Y N 2.710  -9.041  0.646  4.787  1.712  -1.378 OP3    0DT 1  
0DT P      P      P 0 1 N N N 2.197  -10.472 1.166  4.284  0.902  -0.080 P      0DT 2  
0DT OP1    O1P    O 0 1 N N N 2.389  -11.451 0.066  5.345  -0.032 0.360  OP1    0DT 3  
0DT OP2    O2P    O 0 1 N N N 2.811  -10.732 2.493  3.958  1.940  1.107  OP2    0DT 4  
0DT "O5'"  "O5'"  O 0 1 N N N 0.634  -10.247 1.365  2.955  0.071  -0.447 "O5'"  0DT 5  
0DT "C5'"  "C5'"  C 0 1 N N N 0.146  -9.278  2.293  2.325  -0.831 0.464  "C5'"  0DT 6  
0DT "C4'"  "C4'"  C 0 1 N N S -0.057 -9.914  3.649  1.093  -1.449 -0.201 "C4'"  0DT 7  
0DT "O4'"  "O4'"  O 0 1 N N N -0.079 -11.351 3.495  0.087  -0.439 -0.433 "O4'"  0DT 8  
0DT "C3'"  "C3'"  C 0 1 N N R -1.374 -9.581  4.340  0.421  -2.464 0.751  "C3'"  0DT 9  
0DT "O3'"  "O3'"  O 0 1 N N N -1.251 -9.769  5.754  0.818  -3.796 0.424  "O3'"  0DT 10 
0DT "C2'"  "C2'"  C 0 1 N N N -2.322 -10.603 3.741  -1.091 -2.272 0.497  "C2'"  0DT 11 
0DT "C1'"  "C1'"  C 0 1 N N S -1.424 -11.820 3.531  -1.153 -1.164 -0.578 "C1'"  0DT 12 
0DT N1     N1     N 0 1 N N N -1.685 -12.550 2.274  -2.294 -0.278 -0.332 N1     0DT 13 
0DT C2     C2     C 0 1 N N N -2.249 -13.804 2.352  -3.545 -0.770 -0.389 C2     0DT 14 
0DT O2     O2     O 0 1 N N N -2.533 -14.341 3.408  -3.715 -1.946 -0.644 O2     0DT 15 
0DT N3     N3     N 0 1 N N N -2.469 -14.408 1.144  -4.610 0.022  -0.167 N3     0DT 16 
0DT C4     C4     C 0 1 N N N -2.191 -13.900 -0.106 -4.438 1.329  0.118  C4     0DT 17 
0DT O4     O4     O 0 1 N N N -2.459 -14.560 -1.106 -5.402 2.046  0.320  O4     0DT 18 
0DT C5     C5     C 0 1 N N N -1.597 -12.582 -0.118 -3.127 1.859  0.181  C5     0DT 19 
0DT C5M    C5M    C 0 1 N N N -1.276 -11.941 -1.431 -2.908 3.316  0.498  C5M    0DT 20 
0DT C6     C6     C 0 1 N N N -1.371 -11.979 1.057  -2.076 1.041  -0.040 C6     0DT 21 
0DT HOP3   HOP3   H 0 0 N N N 3.025  -9.122  -0.247 5.586  2.236  -1.229 HOP3   0DT 22 
0DT HOP2   HOP2   H 0 0 N N N 3.285  -11.555 2.467  3.270  2.584  0.888  HOP2   0DT 23 
0DT "H5'"  "H5'1" H 0 1 N N N 0.876  -8.460  2.381  3.025  -1.620 0.737  "H5'"  0DT 24 
0DT "H5''" "H5'2" H 0 0 N N N -0.814 -8.880  1.931  2.021  -0.289 1.360  "H5''" 0DT 25 
0DT "H4'"  "H4'"  H 0 1 N N N 0.769  -9.520  4.259  1.370  -1.931 -1.138 "H4'"  0DT 26 
0DT "H3'"  "H3'"  H 0 1 N N N -1.704 -8.541  4.198  0.668  -2.236 1.788  "H3'"  0DT 27 
0DT "HO3'" H3T    H 0 0 N Y N -2.076 -9.559  6.175  0.425  -4.475 0.990  "HO3'" 0DT 28 
0DT "H2'"  "H2'1" H 0 1 N N N -3.159 -10.827 4.418  -1.535 -3.194 0.121  "H2'"  0DT 29 
0DT "H2''" "H2'2" H 0 0 N N N -2.756 -10.249 2.794  -1.594 -1.948 1.408  "H2''" 0DT 30 
0DT "H1'"  "H1'"  H 0 1 N N N -1.623 -12.523 4.353  -1.222 -1.604 -1.573 "H1'"  0DT 31 
0DT H3     H3     H 0 1 N N N -2.877 -15.320 1.172  -5.505 -0.349 -0.212 H3     0DT 32 
0DT H71    H5M1   H 0 1 N N N -0.833 -10.949 -1.257 -3.871 3.805  0.648  H71    0DT 33 
0DT H72    H5M2   H 0 1 N N N -0.561 -12.570 -1.981 -2.310 3.405  1.405  H72    0DT 34 
0DT H73    H5M3   H 0 1 N N N -2.198 -11.833 -2.021 -2.384 3.793  -0.331 H73    0DT 35 
0DT H6     H6     H 0 1 N N N -0.921 -10.997 1.052  -1.069 1.427  0.008  H6     0DT 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0DT OP3   P      SING N N 1  
0DT OP3   HOP3   SING N N 2  
0DT P     OP1    DOUB N N 3  
0DT P     OP2    SING N N 4  
0DT P     "O5'"  SING N N 5  
0DT OP2   HOP2   SING N N 6  
0DT "O5'" "C5'"  SING N N 7  
0DT "C5'" "C4'"  SING N N 8  
0DT "C5'" "H5'"  SING N N 9  
0DT "C5'" "H5''" SING N N 10 
0DT "C4'" "O4'"  SING N N 11 
0DT "C4'" "C3'"  SING N N 12 
0DT "C4'" "H4'"  SING N N 13 
0DT "O4'" "C1'"  SING N N 14 
0DT "C3'" "O3'"  SING N N 15 
0DT "C3'" "C2'"  SING N N 16 
0DT "C3'" "H3'"  SING N N 17 
0DT "O3'" "HO3'" SING N N 18 
0DT "C2'" "C1'"  SING N N 19 
0DT "C2'" "H2'"  SING N N 20 
0DT "C2'" "H2''" SING N N 21 
0DT "C1'" N1     SING N N 22 
0DT "C1'" "H1'"  SING N N 23 
0DT N1    C2     SING N N 24 
0DT N1    C6     SING N N 25 
0DT C2    O2     DOUB N N 26 
0DT C2    N3     SING N N 27 
0DT N3    C4     SING N N 28 
0DT N3    H3     SING N N 29 
0DT C4    O4     DOUB N N 30 
0DT C4    C5     SING N N 31 
0DT C5    C5M    SING N N 32 
0DT C5    C6     DOUB N N 33 
0DT C5M   H71    SING N N 34 
0DT C5M   H72    SING N N 35 
0DT C5M   H73    SING N N 36 
0DT C6    H6     SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0DT SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)NC(=O)C(=C1)C)CC2O"                                                                                                      
0DT SMILES_CANONICAL CACTVS               3.370 "CC1=CN([C@@H]2C[C@@H](O)[C@H](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                      
0DT SMILES           CACTVS               3.370 "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                           
0DT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC1=CN(C(=O)NC1=O)[C@@H]2C[C@H]([C@@H](O2)COP(=O)(O)O)O"                                                                                        
0DT SMILES           "OpenEye OEToolkits" 1.7.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)O"                                                                                                      
0DT InChI            InChI                1.03  "InChI=1S/C10H15N2O8P/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(20-8)4-19-21(16,17)18/h3,6-8,13H,2,4H2,1H3,(H,11,14,15)(H2,16,17,18)/t6-,7+,8+/m1/s1" 
0DT InChIKey         InChI                1.03  GYOZYWVXFNDGLU-CSMHCCOUSA-N                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0DT "SYSTEMATIC NAME" ACDLabs              12.01 "1-(2-deoxy-5-O-phosphono-beta-L-erythro-pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione"        
0DT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2S,3R,5S)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0DT "Create component"  2009-07-27 RCSB 
0DT "Modify descriptor" 2011-06-04 RCSB 
# 
