data_YBS
#

_chem_comp.id                                   YBS
_chem_comp.name                                 "[4-oxidanyl-4-(phenylmethyl)piperidin-1-yl]-(2-pyridin-4-ylpyridin-3-yl)methanone"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H23 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-17
_chem_comp.pdbx_modified_date                   2021-08-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       373.448
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YBS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LRL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YBS  C4   C1   C  0  1  Y  N  N  20.238   3.474  -20.086   4.767   0.245  -0.267  C4   YBS   1  
YBS  C5   C2   C  0  1  Y  N  N  21.319   2.611  -20.049   4.819  -1.128  -0.419  C5   YBS   2  
YBS  C6   C3   C  0  1  Y  N  N  22.391   2.781  -20.904   5.621  -1.886   0.414  C6   YBS   3  
YBS  C7   C4   C  0  1  Y  N  N  22.396   3.851  -21.792   6.371  -1.270   1.399  C7   YBS   4  
YBS  C8   C5   C  0  1  Y  N  N  21.328   4.728  -21.822   6.319   0.102   1.551  C8   YBS   5  
YBS  C10  C6   C  0  1  N  N  N  17.631   2.622  -20.549   1.577   1.939  -1.533  C10  YBS   6  
YBS  N12  N1   N  0  1  N  N  N  17.089   0.461  -21.611  -0.295   0.782  -0.479  N12  YBS   7  
YBS  C13  C7   C  0  1  N  N  N  17.399  -0.208  -20.361   0.555  -0.044   0.389  C13  YBS   8  
YBS  C15  C8   C  0  1  N  N  N  17.335  -0.136  -22.810  -1.501   0.336  -0.884  C15  YBS   9  
YBS  C17  C9   C  0  1  Y  N  N  17.824  -1.537  -22.847  -1.928  -1.039  -0.557  C17  YBS  10  
YBS  C20  C10  C  0  1  Y  N  N  18.742  -4.101  -22.897  -2.785  -3.553   0.080  C20  YBS  11  
YBS  C22  C11  C  0  1  Y  N  N  16.932  -2.634  -22.716  -3.158  -1.274   0.080  C22  YBS  12  
YBS  C24  C12  C  0  1  Y  N  N  14.734  -1.369  -23.013  -5.415  -0.191   0.197  C24  YBS  13  
YBS  C28  C13  C  0  1  Y  N  N  14.681  -3.522  -21.968  -3.513   1.030   1.000  C28  YBS  14  
YBS  O1   O1   O  0  1  N  N  N  16.892   2.124  -18.629   2.590   1.951   0.661  O1   YBS  15  
YBS  C2   C14  C  0  1  N  N  N  18.189   2.004  -19.209   2.500   1.207  -0.556  C2   YBS  16  
YBS  C3   C15  C  0  1  N  N  N  19.051   3.313  -19.158   3.893   1.071  -1.174  C3   YBS  17  
YBS  C9   C16  C  0  1  Y  N  N  20.263   4.544  -20.967   5.514   0.860   0.721  C9   YBS  18  
YBS  C11  C17  C  0  1  N  N  N  16.617   1.847  -21.448   0.193   2.103  -0.896  C11  YBS  19  
YBS  C14  C18  C  0  1  N  N  N  18.581   0.652  -19.871   1.935  -0.184  -0.262  C14  YBS  20  
YBS  O16  O2   O  0  1  N  N  N  17.123   0.437  -23.858  -2.237   1.067  -1.518  O16  YBS  21  
YBS  C18  C19  C  0  1  Y  N  N  19.200  -1.775  -23.007  -1.117  -2.132  -0.881  C18  YBS  22  
YBS  C19  C20  C  0  1  Y  N  N  19.662  -3.082  -23.042  -1.562  -3.401  -0.553  C19  YBS  23  
YBS  N21  N2   N  0  1  Y  N  N  17.448  -3.864  -22.748  -3.536  -2.511   0.371  N21  YBS  24  
YBS  C23  C21  C  0  1  Y  N  N  15.441  -2.493  -22.553  -4.038  -0.133   0.429  C23  YBS  25  
YBS  C25  C22  C  0  1  Y  N  N  13.352  -1.330  -22.836  -6.197   0.894   0.537  C25  YBS  26  
YBS  N26  N3   N  0  1  Y  N  N  12.682  -2.313  -22.242  -5.662   1.973   1.074  N26  YBS  27  
YBS  C27  C23  C  0  1  Y  N  N  13.300  -3.409  -21.830  -4.367   2.069   1.310  C27  YBS  28  
YBS  H1   H1   H  0  1  N  N  N  21.325   1.794  -19.343   4.233  -1.608  -1.188  H1   YBS  29  
YBS  H2   H2   H  0  1  N  N  N  23.219   2.088  -20.883   5.661  -2.958   0.295  H2   YBS  30  
YBS  H3   H3   H  0  1  N  N  N  23.234   3.997  -22.458   6.998  -1.863   2.049  H3   YBS  31  
YBS  H4   H4   H  0  1  N  N  N  21.328   5.557  -22.515   6.905   0.583   2.320  H4   YBS  32  
YBS  H5   H5   H  0  1  N  N  N  18.506   2.833  -21.181   1.992   2.921  -1.760  H5   YBS  33  
YBS  H6   H6   H  0  1  N  N  N  17.141   3.567  -20.273   1.488   1.360  -2.452  H6   YBS  34  
YBS  H7   H7   H  0  1  N  N  N  16.552  -0.172  -19.660   0.658   0.435   1.363  H7   YBS  35  
YBS  H8   H8   H  0  1  N  N  N  17.697  -1.254  -20.523   0.106  -1.030   0.510  H8   YBS  36  
YBS  H9   H9   H  0  1  N  N  N  19.089  -5.124  -22.905  -3.130  -4.544   0.334  H9   YBS  37  
YBS  H10  H10  H  0  1  N  N  N  15.251  -0.552  -23.494  -5.860  -1.069  -0.246  H10  YBS  38  
YBS  H11  H11  H  0  1  N  N  N  15.177  -4.416  -21.620  -2.454   1.115   1.195  H11  YBS  39  
YBS  H12  H12  H  0  1  N  N  N  16.913   1.801  -17.736   3.161   1.545   1.329  H12  YBS  40  
YBS  H13  H13  H  0  1  N  N  N  19.436   3.400  -18.131   4.332   2.061  -1.301  H13  YBS  41  
YBS  H14  H14  H  0  1  N  N  N  18.369   4.151  -19.366   3.813   0.583  -2.145  H14  YBS  42  
YBS  H15  H15  H  0  1  N  N  N  19.438   5.241  -20.983   5.473   1.933   0.840  H15  YBS  43  
YBS  H16  H16  H  0  1  N  N  N  16.550   2.333  -22.433   0.267   2.757  -0.027  H16  YBS  44  
YBS  H17  H17  H  0  1  N  N  N  15.626   1.846  -20.971  -0.495   2.534  -1.623  H17  YBS  45  
YBS  H18  H18  H  0  1  N  N  N  19.147   0.064  -19.133   2.605  -0.714   0.416  H18  YBS  46  
YBS  H19  H19  H  0  1  N  N  N  19.224   0.871  -20.736   1.842  -0.743  -1.193  H19  YBS  47  
YBS  H20  H20  H  0  1  N  N  N  19.890  -0.949  -23.102  -0.167  -1.990  -1.375  H20  YBS  48  
YBS  H21  H21  H  0  1  N  N  N  20.712  -3.297  -23.179  -0.961  -4.267  -0.789  H21  YBS  49  
YBS  H22  H22  H  0  1  N  N  N  12.806  -0.470  -23.194  -7.262   0.859   0.362  H22  YBS  50  
YBS  H23  H23  H  0  1  N  N  N  12.733  -4.215  -21.387  -3.971   2.971   1.751  H23  YBS  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YBS  O16  C15  DOUB  N  N   1  
YBS  C19  C18  DOUB  Y  N   2  
YBS  C19  C20  SING  Y  N   3  
YBS  C24  C25  DOUB  Y  N   4  
YBS  C24  C23  SING  Y  N   5  
YBS  C18  C17  SING  Y  N   6  
YBS  C20  N21  DOUB  Y  N   7  
YBS  C17  C15  SING  N  N   8  
YBS  C17  C22  DOUB  Y  N   9  
YBS  C25  N26  SING  Y  N  10  
YBS  C15  N12  SING  N  N  11  
YBS  N21  C22  SING  Y  N  12  
YBS  C22  C23  SING  N  N  13  
YBS  C23  C28  DOUB  Y  N  14  
YBS  N26  C27  DOUB  Y  N  15  
YBS  C28  C27  SING  Y  N  16  
YBS  C8   C7   DOUB  Y  N  17  
YBS  C8   C9   SING  Y  N  18  
YBS  C7   C6   SING  Y  N  19  
YBS  N12  C11  SING  N  N  20  
YBS  N12  C13  SING  N  N  21  
YBS  C11  C10  SING  N  N  22  
YBS  C9   C4   DOUB  Y  N  23  
YBS  C6   C5   DOUB  Y  N  24  
YBS  C10  C2   SING  N  N  25  
YBS  C13  C14  SING  N  N  26  
YBS  C4   C5   SING  Y  N  27  
YBS  C4   C3   SING  N  N  28  
YBS  C14  C2   SING  N  N  29  
YBS  C2   C3   SING  N  N  30  
YBS  C2   O1   SING  N  N  31  
YBS  C5   H1   SING  N  N  32  
YBS  C6   H2   SING  N  N  33  
YBS  C7   H3   SING  N  N  34  
YBS  C8   H4   SING  N  N  35  
YBS  C10  H5   SING  N  N  36  
YBS  C10  H6   SING  N  N  37  
YBS  C13  H7   SING  N  N  38  
YBS  C13  H8   SING  N  N  39  
YBS  C20  H9   SING  N  N  40  
YBS  C24  H10  SING  N  N  41  
YBS  C28  H11  SING  N  N  42  
YBS  O1   H12  SING  N  N  43  
YBS  C3   H13  SING  N  N  44  
YBS  C3   H14  SING  N  N  45  
YBS  C9   H15  SING  N  N  46  
YBS  C11  H16  SING  N  N  47  
YBS  C11  H17  SING  N  N  48  
YBS  C14  H18  SING  N  N  49  
YBS  C14  H19  SING  N  N  50  
YBS  C18  H20  SING  N  N  51  
YBS  C19  H21  SING  N  N  52  
YBS  C25  H22  SING  N  N  53  
YBS  C27  H23  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YBS  InChI             InChI                 1.03   "InChI=1S/C23H23N3O2/c27-22(20-7-4-12-25-21(20)19-8-13-24-14-9-19)26-15-10-23(28,11-16-26)17-18-5-2-1-3-6-18/h1-9,12-14,28H,10-11,15-17H2"  
YBS  InChIKey          InChI                 1.03   XKUZMIUSBMCVPP-UHFFFAOYSA-N  
YBS  SMILES_CANONICAL  CACTVS                3.385  "OC1(CCN(CC1)C(=O)c2cccnc2c3ccncc3)Cc4ccccc4"  
YBS  SMILES            CACTVS                3.385  "OC1(CCN(CC1)C(=O)c2cccnc2c3ccncc3)Cc4ccccc4"  
YBS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CC2(CCN(CC2)C(=O)c3cccnc3c4ccncc4)O"  
YBS  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CC2(CCN(CC2)C(=O)c3cccnc3c4ccncc4)O"  
#
_pdbx_chem_comp_identifier.comp_id          YBS
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[4-oxidanyl-4-(phenylmethyl)piperidin-1-yl]-(2-pyridin-4-ylpyridin-3-yl)methanone"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YBS  "Create component"  2021-02-17  RCSB  
YBS  "Initial release"   2021-08-25  RCSB  
##
