data_Y9S
# 
_chem_comp.id                                    Y9S 
_chem_comp.name                                  "[4-(trifluoromethoxy)phenyl]methyl (3aR,6aS)-5-(6-sulfamoylpyridine-3-carbonyl)hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H21 F3 N4 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        514.475 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y9S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G4N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y9S C10 C1  C 0 1 Y N N N N N -12.978 5.790  43.615 -5.567 0.411  -0.878 C10 Y9S 1  
Y9S C11 C2  C 0 1 Y N N N N N -11.977 5.181  42.798 -6.270 -0.758 -0.660 C11 Y9S 2  
Y9S C17 C3  C 0 1 N N N N N N -15.119 9.784  48.308 0.094  4.222  -0.104 C17 Y9S 3  
Y9S C18 C4  C 0 1 N N N N N N -12.892 8.926  47.543 -0.249 1.888  0.419  C18 Y9S 4  
Y9S C19 C5  C 0 1 N N S N N N -12.786 10.364 48.068 1.123  2.090  -0.187 C19 Y9S 5  
Y9S C20 C6  C 0 1 N N S N N N -13.966 10.450 49.094 1.368  3.567  0.324  C20 Y9S 6  
Y9S C21 C7  C 0 1 N N N N N N -13.845 11.903 49.448 2.761  3.801  -0.163 C21 Y9S 7  
Y9S C23 C8  C 0 1 N N N N N N -11.636 10.865 48.928 2.392  1.472  0.360  C23 Y9S 8  
Y9S C26 C9  C 0 1 N N N N N N -11.749 12.818 50.654 4.742  2.222  -0.233 C26 Y9S 9  
Y9S C27 C10 C 0 1 Y N N N N N -10.302 12.712 50.942 5.251  0.837  -0.142 C27 Y9S 10 
Y9S F1  F1  F 0 1 N N N N N N -9.916  1.795  40.751 -6.419 -3.455 -0.854 F1  Y9S 11 
Y9S C2  C11 C 0 1 N N N N N N -10.955 2.394  41.285 -7.641 -3.060 -0.299 C2  Y9S 12 
Y9S O3  O1  O 0 1 N N N N N N -10.588 3.148  42.410 -7.401 -2.224 0.834  O3  Y9S 13 
Y9S F4  F2  F 0 1 N N N N N N -11.579 3.111  40.328 -8.379 -2.352 -1.254 F4  Y9S 14 
Y9S F5  F3  F 0 1 N N N N N N -11.836 1.418  41.682 -8.359 -4.192 0.100  F5  Y9S 15 
Y9S C6  C12 C 0 1 Y N N N N N -11.570 3.874  43.096 -6.709 -1.074 0.617  C6  Y9S 16 
Y9S C7  C13 C 0 1 Y N N N N N -12.137 3.129  44.177 -6.440 -0.215 1.673  C7  Y9S 17 
Y9S C8  C14 C 0 1 Y N N N N N -13.132 3.763  44.970 -5.737 0.953  1.450  C8  Y9S 18 
Y9S C9  C15 C 0 1 Y N N N N N -13.555 5.071  44.683 -5.296 1.263  0.177  C9  Y9S 19 
Y9S C12 C16 C 0 1 N N N N N N -14.696 5.675  45.562 -4.529 2.537  -0.063 C12 Y9S 20 
Y9S O13 O2  O 0 1 N N N N N N -14.143 6.826  46.235 -3.108 2.286  0.105  O13 Y9S 21 
Y9S C14 C17 C 0 1 N N N N N N -15.007 7.661  46.965 -2.277 3.330  -0.077 C14 Y9S 22 
Y9S O15 O3  O 0 1 N N N N N N -16.201 7.392  47.168 -2.727 4.421  -0.367 O15 Y9S 23 
Y9S N16 N1  N 0 1 N N N N N N -14.360 8.744  47.536 -0.947 3.164  0.064  N16 Y9S 24 
Y9S N22 N2  N 0 1 N N N N N N -12.348 11.913 49.739 3.433  2.473  -0.032 N22 Y9S 25 
Y9S O28 O4  O 0 1 N N N N N N -12.395 13.692 51.293 5.504  3.134  -0.488 O28 Y9S 26 
Y9S C29 C18 C 0 1 Y N N N N N -9.988  12.070 52.210 6.412  0.462  -0.820 C29 Y9S 27 
Y9S N30 N3  N 0 1 Y N N N N N -8.714  11.877 52.661 6.865  -0.772 -0.740 N30 Y9S 28 
Y9S C31 C19 C 0 1 Y N N N N N -7.686  12.390 51.823 6.251  -1.695 -0.024 C31 Y9S 29 
Y9S C32 C20 C 0 1 Y N N N N N -7.936  12.997 50.634 5.095  -1.403 0.677  C32 Y9S 30 
Y9S C33 C21 C 0 1 Y N N N N N -9.267  13.154 50.158 4.580  -0.119 0.630  C33 Y9S 31 
Y9S S34 S1  S 0 1 N N N N N N -6.008  12.241 52.431 6.913  -3.326 0.038  S34 Y9S 32 
Y9S N35 N4  N 0 1 N N N N N N -6.180  10.757 53.196 7.965  -3.380 1.316  N35 Y9S 33 
Y9S O36 O5  O 0 1 N N N N N N -5.205  12.236 51.190 5.832  -4.186 0.371  O36 Y9S 34 
Y9S O37 O6  O 0 1 N N N N N N -5.666  13.239 53.385 7.699  -3.485 -1.135 O37 Y9S 35 
Y9S H40 H1  H 0 1 N N N N N N -13.294 6.803  43.415 -5.225 0.658  -1.872 H40 Y9S 36 
Y9S H41 H2  H 0 1 N N N N N N -11.543 5.717  41.967 -6.478 -1.424 -1.484 H41 Y9S 37 
Y9S H45 H3  H 0 1 N N N N N N -15.621 10.499 47.640 -0.126 5.078  0.534  H45 Y9S 38 
Y9S H44 H4  H 0 1 N N N N N N -15.860 9.329  48.982 0.159  4.532  -1.147 H44 Y9S 39 
Y9S H46 H5  H 0 1 N N N N N N -12.398 8.211  48.217 -0.751 1.033  -0.035 H46 Y9S 40 
Y9S H47 H6  H 0 1 N N N N N N -12.467 8.831  46.533 -0.182 1.767  1.500  H47 Y9S 41 
Y9S H25 H7  H 0 1 N N N N N N -12.970 11.071 47.246 1.087  2.038  -1.275 H25 Y9S 42 
Y9S H24 H8  H 0 1 N N N N N N -13.722 9.832  49.971 1.394  3.538  1.413  H24 Y9S 43 
Y9S H49 H9  H 0 1 N N N N N N -14.113 12.562 48.609 2.751  4.121  -1.205 H49 Y9S 44 
Y9S H48 H10 H 0 1 N N N N N N -14.445 12.170 50.330 3.262  4.543  0.459  H48 Y9S 45 
Y9S H50 H11 H 0 1 N N N N N N -11.225 10.067 49.564 2.339  1.373  1.444  H50 Y9S 46 
Y9S H51 H12 H 0 1 N N N N N N -10.830 11.299 48.318 2.584  0.505  -0.106 H51 Y9S 47 
Y9S H38 H13 H 0 1 N N N N N N -11.820 2.118  44.384 -6.781 -0.459 2.668  H38 Y9S 48 
Y9S H39 H14 H 0 1 N N N N N N -13.568 3.232  45.803 -5.528 1.622  2.272  H39 Y9S 49 
Y9S H43 H15 H 0 1 N N N N N N -15.542 5.978  44.928 -4.718 2.890  -1.077 H43 Y9S 50 
Y9S H42 H16 H 0 1 N N N N N N -15.038 4.934  46.299 -4.850 3.296  0.651  H42 Y9S 51 
Y9S H52 H17 H 0 1 N N N N N N -10.806 11.728 52.827 6.942  1.190  -1.416 H52 Y9S 52 
Y9S H53 H18 H 0 1 N N N N N N -7.112  13.366 50.041 4.602  -2.167 1.259  H53 Y9S 53 
Y9S H54 H19 H 0 1 N N N N N N -9.459  13.612 49.199 3.682  0.138  1.171  H54 Y9S 54 
Y9S H55 H20 H 0 1 N N N N N N -5.310  10.494 53.614 8.102  -4.211 1.796  H55 Y9S 55 
Y9S H56 H21 H 0 1 N N N N N N -6.882  10.827 53.904 8.443  -2.580 1.584  H56 Y9S 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y9S F1  C2  SING N N 1  
Y9S C2  O3  SING N N 2  
Y9S C2  F4  SING N N 3  
Y9S C2  F5  SING N N 4  
Y9S O3  C6  SING N N 5  
Y9S C6  C7  DOUB Y N 6  
Y9S C6  C11 SING Y N 7  
Y9S C7  C8  SING Y N 8  
Y9S C8  C9  DOUB Y N 9  
Y9S C9  C10 SING Y N 10 
Y9S C9  C12 SING N N 11 
Y9S C10 C11 DOUB Y N 12 
Y9S C12 O13 SING N N 13 
Y9S O13 C14 SING N N 14 
Y9S C14 O15 DOUB N N 15 
Y9S C14 N16 SING N N 16 
Y9S N16 C17 SING N N 17 
Y9S N16 C18 SING N N 18 
Y9S C17 C20 SING N N 19 
Y9S C18 C19 SING N N 20 
Y9S C19 C20 SING N N 21 
Y9S C19 C23 SING N N 22 
Y9S C20 C21 SING N N 23 
Y9S C21 N22 SING N N 24 
Y9S N22 C23 SING N N 25 
Y9S N22 C26 SING N N 26 
Y9S C26 C27 SING N N 27 
Y9S C26 O28 DOUB N N 28 
Y9S C27 C29 DOUB Y N 29 
Y9S C27 C33 SING Y N 30 
Y9S C29 N30 SING Y N 31 
Y9S N30 C31 DOUB Y N 32 
Y9S C31 C32 SING Y N 33 
Y9S C31 S34 SING N N 34 
Y9S C32 C33 DOUB Y N 35 
Y9S S34 N35 SING N N 36 
Y9S S34 O36 DOUB N N 37 
Y9S S34 O37 DOUB N N 38 
Y9S C10 H40 SING N N 39 
Y9S C11 H41 SING N N 40 
Y9S C17 H45 SING N N 41 
Y9S C17 H44 SING N N 42 
Y9S C18 H46 SING N N 43 
Y9S C18 H47 SING N N 44 
Y9S C19 H25 SING N N 45 
Y9S C20 H24 SING N N 46 
Y9S C21 H49 SING N N 47 
Y9S C21 H48 SING N N 48 
Y9S C23 H50 SING N N 49 
Y9S C23 H51 SING N N 50 
Y9S C7  H38 SING N N 51 
Y9S C8  H39 SING N N 52 
Y9S C12 H43 SING N N 53 
Y9S C12 H42 SING N N 54 
Y9S C29 H52 SING N N 55 
Y9S C32 H53 SING N N 56 
Y9S C33 H54 SING N N 57 
Y9S N35 H55 SING N N 58 
Y9S N35 H56 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y9S SMILES           ACDLabs              12.01 "NS(=O)(=O)c1ccc(cn1)C(=O)N1CC2CN(CC2C1)C(=O)OCc1ccc(OC(F)(F)F)cc1"                                                                                                    
Y9S InChI            InChI                1.06  "InChI=1S/C21H21F3N4O6S/c22-21(23,24)34-17-4-1-13(2-5-17)12-33-20(30)28-10-15-8-27(9-16(15)11-28)19(29)14-3-6-18(26-7-14)35(25,31)32/h1-7,15-16H,8-12H2,(H2,25,31,32)" 
Y9S InChIKey         InChI                1.06  NKXQRZNJQNMELC-UHFFFAOYSA-N                                                                                                                                            
Y9S SMILES_CANONICAL CACTVS               3.385 "N[S](=O)(=O)c1ccc(cn1)C(=O)N2C[C@H]3CN(C[C@@H]3C2)C(=O)OCc4ccc(OC(F)(F)F)cc4"                                                                                         
Y9S SMILES           CACTVS               3.385 "N[S](=O)(=O)c1ccc(cn1)C(=O)N2C[CH]3CN(C[CH]3C2)C(=O)OCc4ccc(OC(F)(F)F)cc4"                                                                                            
Y9S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1COC(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc(nc4)S(=O)(=O)N)OC(F)(F)F"                                                                                           
Y9S SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1COC(=O)N2CC3CN(CC3C2)C(=O)c4ccc(nc4)S(=O)(=O)N)OC(F)(F)F"                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y9S "SYSTEMATIC NAME" ACDLabs              12.01 "[4-(trifluoromethoxy)phenyl]methyl (3aR,6aS)-5-(6-sulfamoylpyridine-3-carbonyl)hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carboxylate"                                 
Y9S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[4-(trifluoromethyloxy)phenyl]methyl (3~{a}~{S},6~{a}~{S})-2-(6-sulfamoylpyridin-3-yl)carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrole-5-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y9S "Create component" 2023-06-12 RCSB 
Y9S "Initial release"  2024-12-18 RCSB 
# 
