data_XQS
# 
_chem_comp.id                                    XQS 
_chem_comp.name                                  "sibrafiban (active form)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H24 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "({1-[N-(4-carbamimidoylbenzene-1-carbonyl)-L-alanyl]piperidin-4-yl}oxy)acetic acid; Ro-44-3888" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-01-04 
_chem_comp.pdbx_modified_date                    2022-06-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        376.407 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XQS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7L8P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XQS C10  C1  C 0 1 N N N 54.708 112.351 71.623 -4.552 0.325  -0.003 C10  XQS 1  
XQS C11  C2  C 0 1 N N N 55.385 111.523 72.730 -3.499 0.387  1.106  C11  XQS 2  
XQS C12  C3  C 0 1 N N N 53.515 111.574 71.123 -3.862 0.136  -1.355 C12  XQS 3  
XQS C13  C4  C 0 1 N N N 54.378 111.216 73.824 -2.576 1.585  0.862  C13  XQS 4  
XQS C14  C5  C 0 1 N N N 52.572 111.218 72.223 -2.943 1.331  -1.627 C14  XQS 5  
XQS C15  C6  C 0 1 N N N 52.592 109.561 74.019 -0.688 1.535  -0.696 C15  XQS 6  
XQS C16  C7  C 0 1 N N S 51.293 108.963 73.533 0.251  1.575  0.482  C16  XQS 7  
XQS C17  C8  C 0 1 N N N 53.831 114.550 71.227 -6.762 -0.570 -0.250 C17  XQS 8  
XQS C18  C9  C 0 1 N N N 50.148 109.780 74.087 0.376  3.015  0.985  C18  XQS 9  
XQS C19  C10 C 0 1 N N N 51.948 106.589 73.432 2.405  0.555  0.988  C19  XQS 10 
XQS C20  C11 C 0 1 N N N 54.944 115.068 70.338 -7.601 -1.783 0.058  C20  XQS 11 
XQS C22  C12 C 0 1 Y N N 50.264 104.911 74.026 4.127  0.141  -0.763 C22  XQS 12 
XQS C23  C13 C 0 1 Y N N 52.540 104.157 73.922 4.602  -0.488 1.523  C23  XQS 13 
XQS C24  C14 C 0 1 Y N N 49.849 103.646 74.363 5.367  -0.321 -1.147 C24  XQS 14 
XQS C26  C15 C 0 1 Y N N 50.775 102.634 74.484 6.230  -0.874 -0.200 C26  XQS 15 
XQS C27  C16 C 0 1 N N N 50.229 101.277 74.836 7.563  -1.370 -0.614 C27  XQS 16 
XQS O01  O1  O 0 1 N N N 54.303 113.574 72.136 -5.435 -0.773 0.239  O01  XQS 17 
XQS O02  O2  O 0 1 N N N 53.118 109.077 74.999 -0.246 1.546  -1.825 O02  XQS 18 
XQS O03  O3  O 0 1 N N N 54.655 115.840 69.384 -7.113 -2.725 0.637  O03  XQS 19 
XQS O04  O4  O 0 1 N N N 52.895 106.832 72.714 2.065  0.485  2.153  O04  XQS 20 
XQS O05  O5  O 0 1 N N N 56.146 114.741 70.550 -8.891 -1.818 -0.310 O05  XQS 21 
XQS N06  N1  N 0 1 N N N 53.188 110.674 73.330 -2.020 1.485  -0.494 N06  XQS 22 
XQS N07  N2  N 0 1 N N N 51.093 107.614 73.902 1.569  1.085  0.073  N07  XQS 23 
XQS N08  N3  N 0 1 N N N 50.785 100.488 75.875 8.416  -1.916 0.320  N08  XQS 24 
XQS N09  N4  N 0 1 N N N 49.203 100.877 74.140 7.930  -1.289 -1.861 N09  XQS 25 
XQS C21  C17 C 0 1 Y N N 51.604 105.172 73.820 3.736  0.060  0.575  C21  XQS 26 
XQS C25  C18 C 0 1 Y N N 52.121 102.877 74.257 5.838  -0.960 1.136  C25  XQS 27 
XQS H101 H1  H 0 0 N N N 55.421 112.488 70.797 -5.123 1.254  -0.013 H101 XQS 28 
XQS H111 H2  H 0 0 N N N 55.762 110.581 72.304 -3.993 0.498  2.071  H111 XQS 29 
XQS H112 H3  H 0 0 N N N 56.223 112.095 73.154 -2.912 -0.532 1.101  H112 XQS 30 
XQS H121 H4  H 0 0 N N N 52.980 112.185 70.382 -3.271 -0.780 -1.337 H121 XQS 31 
XQS H122 H5  H 0 0 N N N 53.870 110.648 70.647 -4.614 0.069  -2.141 H122 XQS 32 
XQS H131 H6  H 0 0 N N N 54.828 110.496 74.524 -3.145 2.510  0.956  H131 XQS 33 
XQS H132 H7  H 0 0 N N N 54.144 112.149 74.358 -1.767 1.578  1.593  H132 XQS 34 
XQS H141 H8  H 0 0 N N N 52.042 112.130 72.534 -2.375 1.155  -2.540 H141 XQS 35 
XQS H142 H9  H 0 0 N N N 51.847 110.487 71.835 -3.542 2.235  -1.735 H142 XQS 36 
XQS H161 H10 H 0 0 N N N 51.270 109.047 72.436 -0.140 0.945  1.281  H161 XQS 37 
XQS H171 H11 H 0 0 N N N 53.407 115.391 71.795 -6.732 -0.413 -1.328 H171 XQS 38 
XQS H172 H12 H 0 0 N N N 53.049 114.102 70.596 -7.197 0.305  0.233  H172 XQS 39 
XQS H182 H13 H 0 0 N N N 50.283 110.836 73.811 0.724  3.654  0.174  H182 XQS 40 
XQS H181 H14 H 0 0 N N N 49.199 109.411 73.670 -0.596 3.365  1.332  H181 XQS 41 
XQS H183 H15 H 0 0 N N N 50.128 109.687 75.183 1.090  3.052  1.808  H183 XQS 42 
XQS H221 H16 H 0 0 N N N 49.539 105.705 73.922 3.459  0.569  -1.495 H221 XQS 43 
XQS H231 H17 H 0 0 N N N 53.586 104.359 73.743 4.299  -0.555 2.557  H231 XQS 44 
XQS H241 H18 H 0 0 N N N 48.801 103.446 74.532 5.671  -0.255 -2.181 H241 XQS 45 
XQS H1   H19 H 0 1 N N N 56.706 115.159 69.907 -9.389 -2.618 -0.091 H1   XQS 46 
XQS H071 H20 H 0 0 N N N 50.332 107.379 74.507 1.840  1.140  -0.857 H071 XQS 47 
XQS H081 H21 H 0 0 N N N 51.565 100.830 76.400 8.143  -1.975 1.249  H081 XQS 48 
XQS H091 H23 H 0 0 N N N 48.881 99.976  74.431 8.802  -1.614 -2.132 H091 XQS 49 
XQS H251 H24 H 0 0 N N N 52.839 102.075 74.340 6.508  -1.383 1.869  H251 XQS 50 
XQS H082 H25 H 0 0 N N N 50.397 99.590  76.083 9.289  -2.240 0.049  H082 XQS 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XQS O03 C20  DOUB N N 1  
XQS C20 O05  SING N N 2  
XQS C20 C17  SING N N 3  
XQS C12 C10  SING N N 4  
XQS C12 C14  SING N N 5  
XQS C17 O01  SING N N 6  
XQS C10 O01  SING N N 7  
XQS C10 C11  SING N N 8  
XQS C14 N06  SING N N 9  
XQS O04 C19  DOUB N N 10 
XQS C11 C13  SING N N 11 
XQS N06 C13  SING N N 12 
XQS N06 C15  SING N N 13 
XQS C19 C21  SING N N 14 
XQS C19 N07  SING N N 15 
XQS C16 N07  SING N N 16 
XQS C16 C15  SING N N 17 
XQS C16 C18  SING N N 18 
XQS C21 C23  DOUB Y N 19 
XQS C21 C22  SING Y N 20 
XQS C23 C25  SING Y N 21 
XQS C15 O02  DOUB N N 22 
XQS C22 C24  DOUB Y N 23 
XQS N09 C27  DOUB N N 24 
XQS C25 C26  DOUB Y N 25 
XQS C24 C26  SING Y N 26 
XQS C26 C27  SING N N 27 
XQS C27 N08  SING N N 28 
XQS C10 H101 SING N N 29 
XQS C11 H111 SING N N 30 
XQS C11 H112 SING N N 31 
XQS C12 H121 SING N N 32 
XQS C12 H122 SING N N 33 
XQS C13 H131 SING N N 34 
XQS C13 H132 SING N N 35 
XQS C14 H141 SING N N 36 
XQS C14 H142 SING N N 37 
XQS C16 H161 SING N N 38 
XQS C17 H171 SING N N 39 
XQS C17 H172 SING N N 40 
XQS C18 H182 SING N N 41 
XQS C18 H181 SING N N 42 
XQS C18 H183 SING N N 43 
XQS C22 H221 SING N N 44 
XQS C23 H231 SING N N 45 
XQS C24 H241 SING N N 46 
XQS O05 H1   SING N N 47 
XQS N07 H071 SING N N 48 
XQS N08 H081 SING N N 49 
XQS N09 H091 SING N N 50 
XQS C25 H251 SING N N 51 
XQS N08 H082 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XQS SMILES           ACDLabs              12.01 "C1(OCC(O)=O)CCN(CC1)C(=O)C(NC(c2ccc(/C(N)=N)cc2)=O)C"                                                                                                              
XQS InChI            InChI                1.03  "InChI=1S/C18H24N4O5/c1-11(21-17(25)13-4-2-12(3-5-13)16(19)20)18(26)22-8-6-14(7-9-22)27-10-15(23)24/h2-5,11,14H,6-10H2,1H3,(H3,19,20)(H,21,25)(H,23,24)/t11-/m0/s1" 
XQS InChIKey         InChI                1.03  BHOGTSLQMNCJHA-NSHDSACASA-N                                                                                                                                         
XQS SMILES_CANONICAL CACTVS               3.385 "C[C@H](NC(=O)c1ccc(cc1)C(N)=N)C(=O)N2CCC(CC2)OCC(O)=O"                                                                                                             
XQS SMILES           CACTVS               3.385 "C[CH](NC(=O)c1ccc(cc1)C(N)=N)C(=O)N2CCC(CC2)OCC(O)=O"                                                                                                              
XQS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/c1ccc(cc1)C(=O)N[C@@H](C)C(=O)N2CCC(CC2)OCC(=O)O)\N"                                                                                                      
XQS SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)N1CCC(CC1)OCC(=O)O)NC(=O)c2ccc(cc2)C(=N)N"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XQS "SYSTEMATIC NAME" ACDLabs              12.01 "({1-[N-(4-carbamimidoylbenzene-1-carbonyl)-L-alanyl]piperidin-4-yl}oxy)acetic acid"              
XQS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[1-[(2~{S})-2-[(4-carbamimidoylphenyl)carbonylamino]propanoyl]piperidin-4-yl]oxyethanoic acid" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 XQS "({1-[N-(4-carbamimidoylbenzene-1-carbonyl)-L-alanyl]piperidin-4-yl}oxy)acetic acid" PDB     ? 
2 XQS Ro-44-3888                                                                           PUBCHEM ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XQS "Create component" 2021-01-04 RCSB 
XQS "Initial release"  2022-06-15 RCSB 
# 
