data_WKS
#

_chem_comp.id                                   WKS
_chem_comp.name                                 "2,4-dimethyl-6-(piperazin-1-yl)pyrimidine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H16 N4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-30
_chem_comp.pdbx_modified_date                   2020-11-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       192.261
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WKS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RY9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WKS  C10  C1   C  0  1  N  N  N  -41.392   8.866   2.400  -1.774  -1.131   0.319  C10  WKS   1  
WKS  N12  N1   N  0  1  N  N  N  -42.516   9.826   4.383  -3.859  -0.060  -0.386  N12  WKS   2  
WKS  C13  C2   C  0  1  N  N  N  -41.363   9.639   5.179  -3.220   1.261  -0.305  C13  WKS   3  
WKS  C01  C3   C  0  1  N  N  N  -35.486   9.761   4.262   3.316   2.274   0.127  C01  WKS   4  
WKS  C02  C4   C  0  1  Y  N  N  -36.592   9.443   3.277   2.404   1.075   0.093  C02  WKS   5  
WKS  C03  C5   C  0  1  Y  N  N  -37.857   9.209   3.737   1.042   1.228   0.269  C03  WKS   6  
WKS  C04  C6   C  0  1  Y  N  N  -38.862   8.920   2.807   0.236   0.089   0.228  C04  WKS   7  
WKS  C06  C7   C  0  1  Y  N  N  -37.342   9.084   1.136   2.110  -1.195  -0.141  C06  WKS   8  
WKS  C07  C8   C  0  1  N  N  N  -37.020   8.998  -0.379   2.718  -2.555  -0.371  C07  WKS   9  
WKS  C11  C9   C  0  1  N  N  N  -42.251   9.994   3.003  -3.273  -0.987   0.592  C11  WKS  10  
WKS  C14  C10  C  0  1  N  N  N  -40.554   8.451   4.667  -1.721   1.117  -0.578  C14  WKS  11  
WKS  N05  N2   N  0  1  Y  N  N  -38.577   8.859   1.519   0.806  -1.095   0.023  N05  WKS  12  
WKS  N08  N3   N  0  1  Y  N  N  -36.352   9.360   1.979   2.897  -0.138  -0.113  N08  WKS  13  
WKS  N09  N4   N  0  1  N  N  N  -40.188   8.660   3.236  -1.135   0.190   0.400  N09  WKS  14  
WKS  H1   H1   H  0  1  N  N  N  -41.979   7.936   2.367  -1.332  -1.796   1.061  H1   WKS  15  
WKS  H2   H2   H  0  1  N  N  N  -41.087   9.143   1.380  -1.624  -1.547  -0.678  H2   WKS  16  
WKS  H3   H3   H  0  1  N  N  N  -42.994  10.641   4.711  -3.798  -0.434  -1.321  H3   WKS  17  
WKS  H5   H5   H  0  1  N  N  N  -40.742  10.546   5.137  -3.662   1.926  -1.047  H5   WKS  18  
WKS  H6   H6   H  0  1  N  N  N  -41.667   9.450   6.219  -3.370   1.677   0.691  H6   WKS  19  
WKS  H7   H7   H  0  1  N  N  N  -34.538   9.894   3.720   3.655   2.444   1.149  H7   WKS  20  
WKS  H8   H8   H  0  1  N  N  N  -35.732  10.687   4.803   4.178   2.092  -0.515  H8   WKS  21  
WKS  H9   H9   H  0  1  N  N  N  -35.385   8.933   4.979   2.777   3.152  -0.228  H9   WKS  22  
WKS  H10  H10  H  0  1  N  N  N  -38.076   9.246   4.794   0.612   2.205   0.434  H10  WKS  23  
WKS  H11  H11  H  0  1  N  N  N  -37.935   8.745  -0.935   2.746  -2.763  -1.440  H11  WKS  24  
WKS  H12  H12  H  0  1  N  N  N  -36.635   9.968  -0.728   3.731  -2.572   0.030  H12  WKS  25  
WKS  H13  H13  H  0  1  N  N  N  -36.261   8.220  -0.549   2.115  -3.312   0.131  H13  WKS  26  
WKS  H14  H14  H  0  1  N  N  N  -41.721  10.948   2.864  -3.754  -1.961   0.503  H14  WKS  27  
WKS  H15  H15  H  0  1  N  N  N  -43.210  10.026   2.466  -3.423  -0.596   1.598  H15  WKS  28  
WKS  H16  H16  H  0  1  N  N  N  -41.155   7.534   4.759  -1.571   0.726  -1.585  H16  WKS  29  
WKS  H17  H17  H  0  1  N  N  N  -39.637   8.350   5.266  -1.240   2.091  -0.490  H17  WKS  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WKS  C07  C06  SING  N  N   1  
WKS  C06  N05  DOUB  Y  N   2  
WKS  C06  N08  SING  Y  N   3  
WKS  N05  C04  SING  Y  N   4  
WKS  N08  C02  DOUB  Y  N   5  
WKS  C10  C11  SING  N  N   6  
WKS  C10  N09  SING  N  N   7  
WKS  C04  N09  SING  N  N   8  
WKS  C04  C03  DOUB  Y  N   9  
WKS  C11  N12  SING  N  N  10  
WKS  N09  C14  SING  N  N  11  
WKS  C02  C03  SING  Y  N  12  
WKS  C02  C01  SING  N  N  13  
WKS  N12  C13  SING  N  N  14  
WKS  C14  C13  SING  N  N  15  
WKS  C10  H1   SING  N  N  16  
WKS  C10  H2   SING  N  N  17  
WKS  N12  H3   SING  N  N  18  
WKS  C13  H5   SING  N  N  19  
WKS  C13  H6   SING  N  N  20  
WKS  C01  H7   SING  N  N  21  
WKS  C01  H8   SING  N  N  22  
WKS  C01  H9   SING  N  N  23  
WKS  C03  H10  SING  N  N  24  
WKS  C07  H11  SING  N  N  25  
WKS  C07  H12  SING  N  N  26  
WKS  C07  H13  SING  N  N  27  
WKS  C11  H14  SING  N  N  28  
WKS  C11  H15  SING  N  N  29  
WKS  C14  H16  SING  N  N  30  
WKS  C14  H17  SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WKS  SMILES            ACDLabs               12.01  "C1CNCCN1c2cc(C)nc(n2)C"  
WKS  InChI             InChI                 1.03   "InChI=1S/C10H16N4/c1-8-7-10(13-9(2)12-8)14-5-3-11-4-6-14/h7,11H,3-6H2,1-2H3"  
WKS  InChIKey          InChI                 1.03   NARMKNJWXHFJFF-UHFFFAOYSA-N  
WKS  SMILES_CANONICAL  CACTVS                3.385  "Cc1cc(nc(C)n1)N2CCNCC2"  
WKS  SMILES            CACTVS                3.385  "Cc1cc(nc(C)n1)N2CCNCC2"  
WKS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1cc(nc(n1)C)N2CCNCC2"  
WKS  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1cc(nc(n1)C)N2CCNCC2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WKS  "SYSTEMATIC NAME"  ACDLabs               12.01  "2,4-dimethyl-6-(piperazin-1-yl)pyrimidine"  
WKS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2,4-dimethyl-6-piperazin-1-yl-pyrimidine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WKS  "Create component"  2020-10-30  RCSB  
WKS  "Initial release"   2020-11-11  RCSB  
##
