data_VNS
#

_chem_comp.id                                   VNS
_chem_comp.name                                 "(2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C31 H29 F N4 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-31
_chem_comp.pdbx_modified_date                   2021-09-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       556.650
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VNS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JXQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VNS  O01  O1   O  0  1  N  N  N  20.129  -29.536  -16.643  -3.551   1.542   0.562  O01  VNS   1  
VNS  C02  C1   C  0  1  N  N  N  21.183  -29.705  -17.220  -4.320   0.610   0.665  C02  VNS   2  
VNS  C04  C2   C  0  1  Y  N  N  22.481  -27.971  -15.985  -6.107   2.041   0.050  C04  VNS   3  
VNS  C06  C3   C  0  1  Y  N  N  23.178  -26.383  -14.444  -7.622   3.567  -0.539  C06  VNS   4  
VNS  C07  C4   C  0  1  Y  N  N  21.916  -26.635  -13.878  -6.565   4.381  -0.565  C07  VNS   5  
VNS  C09  C5   C  0  1  N  N  R  21.311  -30.843  -18.324  -3.806  -0.748   1.072  C09  VNS   6  
VNS  C11  C6   C  0  1  N  N  N  19.558  -30.397  -20.161  -1.442  -0.437   0.324  C11  VNS   7  
VNS  C12  C7   C  0  1  Y  N  N  18.221  -30.917  -20.582  -0.085  -0.446   0.903  C12  VNS   8  
VNS  C13  C8   C  0  1  Y  N  N  17.364  -30.579  -21.656   1.176  -0.251   0.340  C13  VNS   9  
VNS  C14  C9   C  0  1  Y  N  N  16.114  -31.206  -21.836   2.308  -0.318   1.144  C14  VNS  10  
VNS  C16  C10  C  0  1  Y  N  N  14.952  -29.611  -23.637   4.789  -0.178   1.354  C16  VNS  11  
VNS  C18  C11  C  0  1  Y  N  N  13.615  -30.568  -25.525   6.160   0.285  -0.555  C18  VNS  12  
VNS  C19  C12  C  0  1  N  N  N  12.736  -30.520  -26.829   7.525   0.494  -1.158  C19  VNS  13  
VNS  C20  C13  C  0  1  N  N  N  11.596  -29.582  -26.454   8.196   1.701  -0.498  C20  VNS  14  
VNS  C21  C14  C  0  1  N  N  N  10.764  -29.000  -27.627   9.605   1.872  -1.071  C21  VNS  15  
VNS  C23  C15  C  0  1  N  N  N  12.199  -27.404  -28.560  10.542   0.418   0.623  C23  VNS  16  
VNS  C24  C16  C  0  1  N  N  N  12.533  -29.583  -29.286   9.788  -0.509  -1.482  C24  VNS  17  
VNS  C25  C17  C  0  1  N  N  N  13.436  -30.065  -28.124   8.385  -0.751  -0.922  C25  VNS  18  
VNS  C15  C18  C  0  1  Y  N  N  15.238  -30.877  -23.062   3.652  -0.111   0.551  C15  VNS  19  
VNS  C17  C19  C  0  1  Y  N  N  14.153  -29.459  -24.821   6.037   0.020   0.797  C17  VNS  20  
VNS  C26  C20  C  0  1  Y  N  N  13.943  -31.823  -24.974   5.035   0.340  -1.359  C26  VNS  21  
VNS  C27  C21  C  0  1  Y  N  N  14.732  -31.963  -23.810   3.783   0.149  -0.812  C27  VNS  22  
VNS  C28  C22  C  0  1  Y  N  N  15.798  -32.246  -20.905   2.182  -0.579   2.509  C28  VNS  23  
VNS  C29  C23  C  0  1  Y  N  N  16.638  -32.598  -19.809   0.931  -0.772   3.064  C29  VNS  24  
VNS  C30  C24  C  0  1  Y  N  N  17.878  -31.921  -19.652  -0.194  -0.707   2.272  C30  VNS  25  
VNS  C31  C25  C  0  1  N  N  N  18.981  -32.057  -18.613  -1.667  -0.867   2.559  C31  VNS  26  
VNS  C33  C26  C  0  1  Y  N  N  21.836  -32.188  -17.667  -4.114  -1.747  -0.012  C33  VNS  27  
VNS  C34  C27  C  0  1  Y  N  N  22.100  -32.289  -16.310  -4.451  -1.311  -1.279  C34  VNS  28  
VNS  C35  C28  C  0  1  Y  N  N  22.566  -33.493  -15.722  -4.734  -2.230  -2.276  C35  VNS  29  
VNS  C37  C29  C  0  1  Y  N  N  22.780  -34.643  -16.516  -4.679  -3.586  -2.005  C37  VNS  30  
VNS  C38  C30  C  0  1  Y  N  N  22.522  -34.581  -17.887  -4.342  -4.025  -0.739  C38  VNS  31  
VNS  C39  C31  C  0  1  Y  N  N  22.054  -33.363  -18.444  -4.053  -3.106   0.259  C39  VNS  32  
VNS  F36  F1   F  0  1  N  N  N  22.802  -33.513  -14.427  -5.064  -1.801  -3.514  F36  VNS  33  
VNS  N03  N1   N  0  1  N  N  N  22.387  -28.930  -16.993  -5.633   0.788   0.421  N03  VNS  34  
VNS  N05  N2   N  0  1  Y  N  N  23.487  -27.161  -15.617  -7.347   2.320  -0.206  N05  VNS  35  
VNS  N10  N3   N  0  1  N  N  N  20.037  -31.053  -18.992  -2.358  -0.680   1.278  N10  VNS  36  
VNS  N22  N4   N  0  1  N  N  N  11.489  -28.657  -28.862  10.388   0.655  -0.819  N22  VNS  37  
VNS  O32  O2   O  0  1  N  N  N  20.235  -29.503  -20.666  -1.696  -0.235  -0.847  O32  VNS  38  
VNS  O40  O3   O  0  1  N  N  N  21.787  -33.272  -19.790  -3.721  -3.537   1.505  O40  VNS  39  
VNS  S08  S1   S  0  1  Y  N  N  21.100  -27.834  -14.801  -5.141   3.441  -0.126  S08  VNS  40  
VNS  H1   H1   H  0  1  N  N  N  23.865  -25.660  -14.030  -8.623   3.902  -0.771  H1   VNS  41  
VNS  H2   H2   H  0  1  N  N  N  21.520  -26.150  -12.998  -6.580   5.432  -0.811  H2   VNS  42  
VNS  H3   H3   H  0  1  N  N  N  22.060  -30.514  -19.059  -4.291  -1.056   1.999  H3   VNS  43  
VNS  H4   H4   H  0  1  N  N  N  17.676  -29.819  -22.358   1.272  -0.049  -0.716  H4   VNS  44  
VNS  H5   H5   H  0  1  N  N  N  15.352  -28.726  -23.165   4.694  -0.380   2.410  H5   VNS  45  
VNS  H6   H6   H  0  1  N  N  N  12.321  -31.525  -26.995   7.426   0.672  -2.229  H6   VNS  46  
VNS  H7   H7   H  0  1  N  N  N  12.028  -28.736  -25.899   7.610   2.598  -0.699  H7   VNS  47  
VNS  H8   H8   H  0  1  N  N  N  10.908  -30.137  -25.799   8.257   1.540   0.578  H8   VNS  48  
VNS  H9   H9   H  0  1  N  N  N  10.277  -28.083  -27.264   9.541   2.047  -2.145  H9   VNS  49  
VNS  H10  H10  H  0  1  N  N  N   9.997  -29.744  -27.889  10.091   2.722  -0.592  H10  VNS  50  
VNS  H11  H11  H  0  1  N  N  N  11.477  -26.643  -28.229  11.188  -0.446   0.782  H11  VNS  51  
VNS  H12  H12  H  0  1  N  N  N  12.935  -27.583  -27.762  10.988   1.296   1.090  H12  VNS  52  
VNS  H13  H13  H  0  1  N  N  N  12.717  -27.049  -29.463   9.565   0.228   1.066  H13  VNS  53  
VNS  H14  H14  H  0  1  N  N  N  12.055  -30.462  -29.744  10.407  -1.388  -1.303  H14  VNS  54  
VNS  H15  H15  H  0  1  N  N  N  13.164  -29.079  -30.032   9.724  -0.323  -2.555  H15  VNS  55  
VNS  H16  H16  H  0  1  N  N  N  14.028  -30.914  -28.496   8.450  -0.951   0.148  H16  VNS  56  
VNS  H17  H17  H  0  1  N  N  N  14.109  -29.235  -27.862   7.934  -1.606  -1.426  H17  VNS  57  
VNS  H18  H18  H  0  1  N  N  N  13.954  -28.463  -25.189   6.918  -0.031   1.419  H18  VNS  58  
VNS  H19  H19  H  0  1  N  N  N  13.576  -32.714  -25.461   5.137   0.547  -2.414  H19  VNS  59  
VNS  H20  H20  H  0  1  N  N  N  14.962  -32.962  -23.471   2.905   0.193  -1.440  H20  VNS  60  
VNS  H21  H21  H  0  1  N  N  N  14.876  -32.792  -21.040   3.062  -0.630   3.132  H21  VNS  61  
VNS  H22  H22  H  0  1  N  N  N  16.338  -33.365  -19.110   0.835  -0.975   4.120  H22  VNS  62  
VNS  H23  H23  H  0  1  N  N  N  18.589  -31.838  -17.609  -1.866  -1.865   2.950  H23  VNS  63  
VNS  H24  H24  H  0  1  N  N  N  19.398  -33.075  -18.630  -1.993  -0.112   3.275  H24  VNS  64  
VNS  H25  H25  H  0  1  N  N  N  21.946  -31.425  -15.681  -4.495  -0.253  -1.491  H25  VNS  65  
VNS  H26  H26  H  0  1  N  N  N  23.138  -35.558  -16.068  -4.899  -4.301  -2.783  H26  VNS  66  
VNS  H27  H27  H  0  1  N  N  N  22.676  -35.447  -18.514  -4.299  -5.083  -0.528  H27  VNS  67  
VNS  H28  H28  H  0  1  N  N  N  23.180  -29.089  -17.581  -6.247   0.042   0.503  H28  VNS  68  
VNS  H30  H30  H  0  1  N  N  N  21.485  -32.395  -19.995  -2.773  -3.677   1.633  H30  VNS  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VNS  C24  N22  SING  N  N   1  
VNS  C24  C25  SING  N  N   2  
VNS  N22  C23  SING  N  N   3  
VNS  N22  C21  SING  N  N   4  
VNS  C25  C19  SING  N  N   5  
VNS  C21  C20  SING  N  N   6  
VNS  C19  C20  SING  N  N   7  
VNS  C19  C18  SING  N  N   8  
VNS  C18  C26  DOUB  Y  N   9  
VNS  C18  C17  SING  Y  N  10  
VNS  C26  C27  SING  Y  N  11  
VNS  C17  C16  DOUB  Y  N  12  
VNS  C27  C15  DOUB  Y  N  13  
VNS  C16  C15  SING  Y  N  14  
VNS  C15  C14  SING  N  N  15  
VNS  C14  C13  DOUB  Y  N  16  
VNS  C14  C28  SING  Y  N  17  
VNS  C13  C12  SING  Y  N  18  
VNS  C28  C29  DOUB  Y  N  19  
VNS  O32  C11  DOUB  N  N  20  
VNS  C12  C11  SING  N  N  21  
VNS  C12  C30  DOUB  Y  N  22  
VNS  C11  N10  SING  N  N  23  
VNS  C29  C30  SING  Y  N  24  
VNS  O40  C39  SING  N  N  25  
VNS  C30  C31  SING  N  N  26  
VNS  N10  C31  SING  N  N  27  
VNS  N10  C09  SING  N  N  28  
VNS  C39  C38  DOUB  Y  N  29  
VNS  C39  C33  SING  Y  N  30  
VNS  C09  C33  SING  N  N  31  
VNS  C09  C02  SING  N  N  32  
VNS  C38  C37  SING  Y  N  33  
VNS  C33  C34  DOUB  Y  N  34  
VNS  C02  N03  SING  N  N  35  
VNS  C02  O01  DOUB  N  N  36  
VNS  N03  C04  SING  N  N  37  
VNS  C37  C35  DOUB  Y  N  38  
VNS  C34  C35  SING  Y  N  39  
VNS  C04  N05  DOUB  Y  N  40  
VNS  C04  S08  SING  Y  N  41  
VNS  C35  F36  SING  N  N  42  
VNS  N05  C06  SING  Y  N  43  
VNS  S08  C07  SING  Y  N  44  
VNS  C06  C07  DOUB  Y  N  45  
VNS  C06  H1   SING  N  N  46  
VNS  C07  H2   SING  N  N  47  
VNS  C09  H3   SING  N  N  48  
VNS  C13  H4   SING  N  N  49  
VNS  C16  H5   SING  N  N  50  
VNS  C19  H6   SING  N  N  51  
VNS  C20  H7   SING  N  N  52  
VNS  C20  H8   SING  N  N  53  
VNS  C21  H9   SING  N  N  54  
VNS  C21  H10  SING  N  N  55  
VNS  C23  H11  SING  N  N  56  
VNS  C23  H12  SING  N  N  57  
VNS  C23  H13  SING  N  N  58  
VNS  C24  H14  SING  N  N  59  
VNS  C24  H15  SING  N  N  60  
VNS  C25  H16  SING  N  N  61  
VNS  C25  H17  SING  N  N  62  
VNS  C17  H18  SING  N  N  63  
VNS  C26  H19  SING  N  N  64  
VNS  C27  H20  SING  N  N  65  
VNS  C28  H21  SING  N  N  66  
VNS  C29  H22  SING  N  N  67  
VNS  C31  H23  SING  N  N  68  
VNS  C31  H24  SING  N  N  69  
VNS  C34  H25  SING  N  N  70  
VNS  C37  H26  SING  N  N  71  
VNS  C38  H27  SING  N  N  72  
VNS  N03  H28  SING  N  N  73  
VNS  O40  H30  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VNS  SMILES            ACDLabs               12.01  "O=C(Nc1nccs1)C(c2cc(F)ccc2O)N6C(c3c(ccc(c3)c4ccc(cc4)C5CCN(C)CC5)C6)=O"  
VNS  InChI             InChI                 1.03   "InChI=1S/C31H29FN4O3S/c1-35-13-10-21(11-14-35)19-2-4-20(5-3-19)22-6-7-23-18-36(30(39)25(23)16-22)28(26-17-24(32)8-9-27(26)37)29(38)34-31-33-12-15-40-31/h2-9,12,15-17,21,28,37H,10-11,13-14,18H2,1H3,(H,33,34,38)/t28-/m1/s1"  
VNS  InChIKey          InChI                 1.03   SYTVDTWRIZNVEW-MUUNZHRXSA-N  
VNS  SMILES_CANONICAL  CACTVS                3.385  "CN1CCC(CC1)c2ccc(cc2)c3ccc4CN([C@@H](C(=O)Nc5sccn5)c6cc(F)ccc6O)C(=O)c4c3"  
VNS  SMILES            CACTVS                3.385  "CN1CCC(CC1)c2ccc(cc2)c3ccc4CN([CH](C(=O)Nc5sccn5)c6cc(F)ccc6O)C(=O)c4c3"  
VNS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1CCC(CC1)c2ccc(cc2)c3ccc4c(c3)C(=O)N(C4)[C@H](c5cc(ccc5O)F)C(=O)Nc6nccs6"  
VNS  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1CCC(CC1)c2ccc(cc2)c3ccc4c(c3)C(=O)N(C4)C(c5cc(ccc5O)F)C(=O)Nc6nccs6"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VNS  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide"  
VNS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R})-2-(5-fluoranyl-2-oxidanyl-phenyl)-2-[5-[4-(1-methylpiperidin-4-yl)phenyl]-3-oxidanylidene-1~{H}-isoindol-2-yl]-~{N}-(1,3-thiazol-2-yl)ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VNS  "Create component"  2020-08-31  RCSB  
VNS  "Initial release"   2021-09-08  RCSB  
##
