data_VKS
#

_chem_comp.id                                   VKS
_chem_comp.name                                 "(3S,4S)-8-{6-amino-5-[(2-amino-3-chloropyridin-4-yl)sulfanyl]pyrazin-2-yl}-3-methyl-2-oxa-8-azaspiro[4.5]decan-4-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H24 Cl N7 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-24
_chem_comp.pdbx_modified_date                   2020-09-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       421.947
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VKS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JVM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VKS  C1   C1   C   0  1  Y  N  N  17.364  39.794  4.156   5.840   0.364   1.925  C1   VKS   1  
VKS  C2   C2   C   0  1  Y  N  N  16.394  40.475  6.117   5.060   1.907   0.389  C2   VKS   2  
VKS  C3   C3   C   0  1  Y  N  N  17.631  40.572  6.765   4.356   0.926  -0.298  C3   VKS   3  
VKS  O1   O1   O   0  1  N  N  N  28.879  42.572  1.789  -6.713   1.202   0.561  O1   VKS   4  
VKS  C11  C4   C   0  1  N  N  N  25.388  39.830  2.431  -2.926  -1.731   0.249  C11  VKS   5  
VKS  C12  C5   C   0  1  N  N  N  26.618  40.358  3.225  -4.337  -1.577   0.827  C12  VKS   6  
VKS  C13  C6   C   0  1  N  N  N  26.951  41.863  2.937  -4.786  -0.130   0.683  C13  VKS   7  
VKS  C14  C7   C   0  1  N  N  N  25.663  42.751  2.910  -3.791   0.821   1.333  C14  VKS   8  
VKS  C15  C8   C   0  1  N  N  N  27.633  41.951  1.551  -6.193   0.064   1.283  C15  VKS   9  
VKS  C16  C9   C   0  1  N  N  S  29.320  42.157  3.068  -6.287   1.066  -0.806  C16  VKS  10  
VKS  C17  C10  C   0  1  N  N  S  28.057  42.307  3.919  -4.991   0.230  -0.801  C17  VKS  11  
VKS  C18  C11  C   0  1  N  N  N  30.563  42.939  3.498  -6.012   2.447  -1.405  C18  VKS  12  
VKS  N1   N1   N   0  1  Y  N  N  16.251  40.070  4.853   5.770   1.600   1.465  N1   VKS  13  
VKS  C4   C12  C   0  1  Y  N  N  18.786  40.312  6.032   4.408  -0.388   0.160  C4   VKS  14  
VKS  C5   C13  C   0  1  Y  N  N  18.653  39.863  4.713   5.170  -0.664   1.298  C5   VKS  15  
VKS  S1   S1   S   0  1  N  N  N  20.339  40.482  6.838   3.535  -1.671  -0.675  S1   VKS  16  
VKS  C6   C14  C   0  1  Y  N  N  21.461  40.523  5.509   1.866  -1.402  -0.178  C6   VKS  17  
VKS  N2   N2   N   0  1  Y  N  N  21.365  41.612  4.713   1.582  -0.467   0.715  N2   VKS  18  
VKS  C7   C15  C   0  1  Y  N  N  22.305  41.678  3.760   0.328  -0.265   1.089  C7   VKS  19  
VKS  C8   C16  C   0  1  Y  N  N  23.301  40.689  3.573  -0.693  -1.032   0.546  C8   VKS  20  
VKS  N3   N3   N   0  1  Y  N  N  23.383  39.634  4.420  -0.416  -1.972  -0.351  N3   VKS  21  
VKS  C9   C17  C   0  1  Y  N  N  22.461  39.539  5.379   0.837  -2.174  -0.732  C9   VKS  22  
VKS  N4   N4   N   0  1  N  N  N  22.585  38.442  6.221   1.131  -3.157  -1.672  N4   VKS  23  
VKS  CL1  CL1  CL  0  0  N  N  N  17.730  41.064  8.413   3.427   1.332  -1.707  CL1  VKS  24  
VKS  C10  C18  C   0  1  N  N  N  24.574  42.140  2.008  -2.399   0.586   0.738  C10  VKS  25  
VKS  N5   N5   N   0  1  N  N  N  24.331  40.831  2.612  -2.011  -0.816   0.943  N5   VKS  26  
VKS  N6   N6   N   0  1  N  N  N  27.887  43.672  4.476  -3.862   1.027  -1.298  N6   VKS  27  
VKS  N7   N7   N   0  1  N  N  N  15.239  40.788  6.802   5.018   3.224  -0.057  N7   VKS  28  
VKS  H1   H1   H   0  1  N  N  N  17.265  39.506  3.120   6.434   0.155   2.802  H1   VKS  29  
VKS  H2   H2   H   0  1  N  N  N  25.065  38.857  2.829  -2.587  -2.758   0.386  H2   VKS  30  
VKS  H3   H3   H   0  1  N  N  N  25.637  39.726  1.365  -2.942  -1.492  -0.815  H3   VKS  31  
VKS  H4   H4   H   0  1  N  N  N  26.412  40.247  4.300  -5.024  -2.227   0.287  H4   VKS  32  
VKS  H5   H5   H   0  1  N  N  N  27.494  39.750  2.955  -4.329  -1.852   1.882  H5   VKS  33  
VKS  H6   H6   H   0  1  N  N  N  25.925  43.749  2.528  -4.097   1.850   1.147  H6   VKS  34  
VKS  H7   H7   H   0  1  N  N  N  25.270  42.842  3.933  -3.763   0.639   2.408  H7   VKS  35  
VKS  H8   H8   H   0  1  N  N  N  27.027  42.556  0.861  -6.129   0.282   2.349  H8   VKS  36  
VKS  H9   H9   H   0  1  N  N  N  27.778  40.946  1.128  -6.810  -0.817   1.107  H9   VKS  37  
VKS  H10  H10  H   0  1  N  N  N  29.584  41.090  3.037  -7.057   0.558  -1.386  H10  VKS  38  
VKS  H11  H11  H   0  1  N  N  N  28.101  41.582  4.745  -5.116  -0.673  -1.399  H11  VKS  39  
VKS  H12  H12  H   0  1  N  N  N  30.885  42.598  4.493  -5.247   2.953  -0.816  H12  VKS  40  
VKS  H13  H13  H   0  1  N  N  N  31.372  42.769  2.773  -5.665   2.335  -2.432  H13  VKS  41  
VKS  H14  H14  H   0  1  N  N  N  30.325  44.012  3.537  -6.929   3.037  -1.394  H14  VKS  42  
VKS  H15  H15  H   0  1  N  N  N  19.520  39.576  4.137   5.234  -1.671   1.682  H15  VKS  43  
VKS  H16  H16  H   0  1  N  N  N  22.303  42.532  3.099   0.100   0.498   1.818  H16  VKS  44  
VKS  H17  H17  H   0  1  N  N  N  23.377  37.897  5.945   0.419  -3.696  -2.049  H17  VKS  45  
VKS  H18  H18  H   0  1  N  N  N  22.708  38.757  7.162   2.049  -3.303  -1.949  H18  VKS  46  
VKS  H19  H19  H   0  1  N  N  N  24.932  42.036  0.973  -2.419   0.805  -0.330  H19  VKS  47  
VKS  H20  H20  H   0  1  N  N  N  23.662  42.755  2.020  -1.678   1.238   1.230  H20  VKS  48  
VKS  H21  H21  H   0  1  N  N  N  28.643  43.875  5.098  -3.989   1.266  -2.270  H21  VKS  49  
VKS  H22  H22  H   0  1  N  N  N  27.881  44.338  3.730  -3.727   1.854  -0.737  H22  VKS  50  
VKS  H24  H24  H   0  1  N  N  N  14.449  40.651  6.204   4.500   3.454  -0.844  H24  VKS  51  
VKS  H25  H25  H   0  1  N  N  N  15.156  40.196  7.604   5.507   3.913   0.420  H25  VKS  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VKS  C15  O1   SING  N  N   1  
VKS  C15  C13  SING  N  N   2  
VKS  O1   C16  SING  N  N   3  
VKS  C10  N5   SING  N  N   4  
VKS  C10  C14  SING  N  N   5  
VKS  C11  N5   SING  N  N   6  
VKS  C11  C12  SING  N  N   7  
VKS  N5   C8   SING  N  N   8  
VKS  C14  C13  SING  N  N   9  
VKS  C13  C12  SING  N  N  10  
VKS  C13  C17  SING  N  N  11  
VKS  C16  C18  SING  N  N  12  
VKS  C16  C17  SING  N  N  13  
VKS  C8   C7   DOUB  Y  N  14  
VKS  C8   N3   SING  Y  N  15  
VKS  C7   N2   SING  Y  N  16  
VKS  C17  N6   SING  N  N  17  
VKS  C1   C5   DOUB  Y  N  18  
VKS  C1   N1   SING  Y  N  19  
VKS  N3   C9   DOUB  Y  N  20  
VKS  C5   C4   SING  Y  N  21  
VKS  N2   C6   DOUB  Y  N  22  
VKS  N1   C2   DOUB  Y  N  23  
VKS  C9   C6   SING  Y  N  24  
VKS  C9   N4   SING  N  N  25  
VKS  C6   S1   SING  N  N  26  
VKS  C4   C3   DOUB  Y  N  27  
VKS  C4   S1   SING  N  N  28  
VKS  C2   C3   SING  Y  N  29  
VKS  C2   N7   SING  N  N  30  
VKS  C3   CL1  SING  N  N  31  
VKS  C1   H1   SING  N  N  32  
VKS  C11  H2   SING  N  N  33  
VKS  C11  H3   SING  N  N  34  
VKS  C12  H4   SING  N  N  35  
VKS  C12  H5   SING  N  N  36  
VKS  C14  H6   SING  N  N  37  
VKS  C14  H7   SING  N  N  38  
VKS  C15  H8   SING  N  N  39  
VKS  C15  H9   SING  N  N  40  
VKS  C16  H10  SING  N  N  41  
VKS  C17  H11  SING  N  N  42  
VKS  C18  H12  SING  N  N  43  
VKS  C18  H13  SING  N  N  44  
VKS  C18  H14  SING  N  N  45  
VKS  C5   H15  SING  N  N  46  
VKS  C7   H16  SING  N  N  47  
VKS  N4   H17  SING  N  N  48  
VKS  N4   H18  SING  N  N  49  
VKS  C10  H19  SING  N  N  50  
VKS  C10  H20  SING  N  N  51  
VKS  N6   H21  SING  N  N  52  
VKS  N6   H22  SING  N  N  53  
VKS  N7   H24  SING  N  N  54  
VKS  N7   H25  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VKS  SMILES            ACDLabs               12.01  "c1cc(c(c(N)n1)Cl)Sc2ncc(nc2N)N4CCC3(C(C(OC3)C)N)CC4"  
VKS  InChI             InChI                 1.03   "InChI=1S/C18H24ClN7OS/c1-10-14(20)18(9-27-10)3-6-26(7-4-18)12-8-24-17(16(22)25-12)28-11-2-5-23-15(21)13(11)19/h2,5,8,10,14H,3-4,6-7,9,20H2,1H3,(H2,21,23)(H2,22,25)/t10-,14+/m0/s1"  
VKS  InChIKey          InChI                 1.03   UCJZOKGUEJUNIO-IINYFYTJSA-N  
VKS  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1OCC2(CCN(CC2)c3cnc(Sc4ccnc(N)c4Cl)c(N)n3)[C@@H]1N"  
VKS  SMILES            CACTVS                3.385  "C[CH]1OCC2(CCN(CC2)c3cnc(Sc4ccnc(N)c4Cl)c(N)n3)[CH]1N"  
VKS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1[C@H](C2(CCN(CC2)c3cnc(c(n3)N)Sc4ccnc(c4Cl)N)CO1)N"  
VKS  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C2(CCN(CC2)c3cnc(c(n3)N)Sc4ccnc(c4Cl)N)CO1)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VKS  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3S,4S)-8-{6-amino-5-[(2-amino-3-chloropyridin-4-yl)sulfanyl]pyrazin-2-yl}-3-methyl-2-oxa-8-azaspiro[4.5]decan-4-amine"  
VKS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{S},4~{S})-8-[6-azanyl-5-(2-azanyl-3-chloranyl-pyridin-4-yl)sulfanyl-pyrazin-2-yl]-3-methyl-2-oxa-8-azaspiro[4.5]decan-4-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VKS  "Create component"  2020-08-24  RCSB  
VKS  "Initial release"   2020-09-23  RCSB  
##
