data_NBS
# 
_chem_comp.id                                    NBS 
_chem_comp.name                                  
;N6-BENZYL ADENOSINE-5'-DIPHOSPHATE
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H21 N5 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-01-18 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        517.324 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NBS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1KSW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NBS PB     PB   P 0 1 N N N -4.707 48.145 -1.934 -2.310 0.322  -6.837 PB     NBS 1  
NBS O4P    O4P  O 0 1 N N N -5.024 48.685 -3.293 -3.383 1.364  -7.433 O4P    NBS 2  
NBS O5P    O5P  O 0 1 N N N -5.808 48.284 -0.909 -1.258 -0.082 -7.987 O5P    NBS 3  
NBS O6P    O6P  O 0 1 N N N -3.972 46.826 -1.940 -3.013 -0.891 -6.362 O6P    NBS 4  
NBS PA     PA   P 0 1 N N R -3.543 50.260 -0.276 -0.476 -0.088 -5.063 PA     NBS 5  
NBS O1P    O1P  O 0 1 N N N -2.687 51.406 -0.661 -1.271 -1.401 -4.576 O1P    NBS 6  
NBS O2P    O2P  O 0 1 N N N -4.848 50.534 0.382  0.462  -0.453 -6.147 O2P    NBS 7  
NBS O3P    O3P  O 0 1 N N N -3.564 49.311 -1.621 -1.526 1.003  -5.607 O3P    NBS 8  
NBS "O5'"  O5*  O 0 1 N N N -2.610 49.421 0.740  0.347  0.529  -3.825 "O5'"  NBS 9  
NBS "C5'"  C5*  C 0 1 N N N -1.573 48.533 0.307  1.257  -0.482 -3.389 "C5'"  NBS 10 
NBS "C4'"  C4*  C 0 1 N N R -0.651 49.114 -0.784 2.076  0.043  -2.207 "C4'"  NBS 11 
NBS "O4'"  O4*  O 0 1 N N N -0.010 50.364 -0.381 1.207  0.366  -1.097 "O4'"  NBS 12 
NBS "C1'"  C1*  C 0 1 N N R 1.284  50.048 0.196  2.059  0.366  0.068  "C1'"  NBS 13 
NBS N9     N9   N 0 1 Y N N 1.216  50.221 1.663  1.263  0.192  1.285  N9     NBS 14 
NBS C4     C4   C 0 1 Y N N 2.281  50.338 2.523  1.607  0.605  2.547  C4     NBS 15 
NBS N3     N3   N 0 1 Y N N 3.589  50.268 2.200  2.646  1.246  3.073  N3     NBS 16 
NBS C2     C2   C 0 1 Y N N 4.356  50.437 3.278  2.685  1.515  4.362  C2     NBS 17 
NBS N1     N1   N 0 1 Y N N 3.983  50.648 4.538  1.712  1.174  5.187  N1     NBS 18 
NBS C6     C6   C 0 1 Y N N 2.667  50.715 4.839  0.632  0.535  4.751  C6     NBS 19 
NBS N6     N6   N 0 1 N N N 2.300  50.986 6.161  -0.382 0.182  5.623  N6     NBS 20 
NBS CB1    CB1  C 0 1 N N N 0.977  50.744 6.712  -0.272 0.513  7.046  CB1    NBS 21 
NBS CB2    CB2  C 0 1 Y N N 0.074  52.009 6.767  -1.498 0.022  7.772  CB2    NBS 22 
NBS CB3    CB3  C 0 1 Y N N -0.834 52.160 7.806  -1.521 -1.251 8.307  CB3    NBS 23 
NBS CB4    CB4  C 0 1 Y N N -1.704 53.277 7.856  -2.646 -1.701 8.973  CB4    NBS 24 
NBS CB5    CB5  C 0 1 Y N N -1.641 54.242 6.839  -3.748 -0.877 9.104  CB5    NBS 25 
NBS CB6    CB6  C 0 1 Y N N -0.724 54.091 5.798  -3.724 0.397  8.570  CB6    NBS 26 
NBS CB7    CB7  C 0 1 Y N N 0.139  52.966 5.774  -2.598 0.849  7.908  CB7    NBS 27 
NBS C5     C5   C 0 1 Y N N 1.754  50.560 3.772  0.543  0.226  3.383  C5     NBS 28 
NBS N7     N7   N 0 1 Y N N 0.370  50.566 3.712  -0.374 -0.394 2.604  N7     NBS 29 
NBS C8     C8   C 0 1 Y N N 0.107  50.359 2.457  0.046  -0.415 1.372  C8     NBS 30 
NBS "C2'"  C2*  C 0 1 N N R 1.602  48.606 -0.167 3.003  -0.839 -0.133 "C2'"  NBS 31 
NBS "O2'"  O2*  O 0 1 N N N 2.850  48.522 -0.850 4.317  -0.535 0.339  "O2'"  NBS 32 
NBS "C3'"  C3*  C 0 1 N N S 0.470  48.143 -1.051 3.015  -1.055 -1.663 "C3'"  NBS 33 
NBS "O3'"  O3*  O 0 1 N N N 0.810  48.231 -2.417 4.336  -0.887 -2.182 "O3'"  NBS 34 
NBS HOP4   4HOP H 0 0 N N N -4.331 48.597 -3.937 -3.829 0.917  -8.165 HOP4   NBS 35 
NBS HOP5   5HOP H 0 0 N N N -5.606 47.941 -0.046 -0.823 0.734  -8.267 HOP5   NBS 36 
NBS HOP1   1HOP H 0 0 N N N -1.853 51.230 -1.081 -1.870 -1.120 -3.871 HOP1   NBS 37 
NBS "H5'1" 1H5* H 0 0 N N N -0.971 48.183 1.178  1.928  -0.745 -4.207 "H5'1" NBS 38 
NBS "H5'2" 2H5* H 0 0 N N N -2.007 47.562 -0.027 0.698  -1.365 -3.079 "H5'2" NBS 39 
NBS "H4'"  H4*  H 0 1 N N N -1.296 49.297 -1.674 2.652  0.919  -2.506 "H4'"  NBS 40 
NBS "H1'"  H1*  H 0 1 N N N 2.082  50.721 -0.194 2.632  1.292  0.119  "H1'"  NBS 41 
NBS H2     H2   H 0 1 N N N 5.444  50.396 3.104  3.546  2.033  4.758  H2     NBS 42 
NBS H6     H6   H 0 1 N N N 2.519  51.966 6.335  -1.165 -0.283 5.293  H6     NBS 43 
NBS HB11   1HB1 H 0 0 N N N 0.466  49.922 6.157  0.613  0.033  7.463  HB11   NBS 44 
NBS HB12   2HB1 H 0 0 N N N 1.052  50.272 7.719  -0.189 1.593  7.163  HB12   NBS 45 
NBS HB3    HB3  H 0 1 N N N -0.864 51.389 8.594  -0.660 -1.896 8.205  HB3    NBS 46 
NBS HB4    HB4  H 0 1 N N N -2.425 53.394 8.681  -2.664 -2.697 9.390  HB4    NBS 47 
NBS HB5    HB5  H 0 1 N N N -2.311 55.117 6.857  -4.627 -1.228 9.623  HB5    NBS 48 
NBS HB6    HB6  H 0 1 N N N -0.681 54.853 5.002  -4.585 1.041  8.672  HB6    NBS 49 
NBS HB7    HB7  H 0 1 N N N 0.877  52.832 4.965  -2.580 1.845  7.490  HB7    NBS 50 
NBS H8     H8   H 0 1 N N N -0.937 50.306 2.106  -0.490 -0.851 0.542  H8     NBS 51 
NBS "H2'"  H2*  H 0 1 N N N 1.693  47.965 0.741  2.611  -1.721 0.373  "H2'"  NBS 52 
NBS "HO'2" 2HO* H 0 0 N N N 3.048  47.621 -1.076 4.873  -1.299 0.131  "HO'2" NBS 53 
NBS "H3'"  H3*  H 0 1 N N N 0.210  47.080 -0.835 2.630  -2.044 -1.912 "H3'"  NBS 54 
NBS "HO'3" 3HO* H 0 0 N N N 1.516  47.618 -2.585 4.882  -1.580 -1.786 "HO'3" NBS 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NBS PB    O4P    SING N N 1  
NBS PB    O5P    SING N N 2  
NBS PB    O6P    DOUB N N 3  
NBS PB    O3P    SING N N 4  
NBS O4P   HOP4   SING N N 5  
NBS O5P   HOP5   SING N N 6  
NBS PA    O1P    SING N N 7  
NBS PA    O2P    DOUB N N 8  
NBS PA    O3P    SING N N 9  
NBS PA    "O5'"  SING N N 10 
NBS O1P   HOP1   SING N N 11 
NBS "O5'" "C5'"  SING N N 12 
NBS "C5'" "C4'"  SING N N 13 
NBS "C5'" "H5'1" SING N N 14 
NBS "C5'" "H5'2" SING N N 15 
NBS "C4'" "O4'"  SING N N 16 
NBS "C4'" "C3'"  SING N N 17 
NBS "C4'" "H4'"  SING N N 18 
NBS "O4'" "C1'"  SING N N 19 
NBS "C1'" N9     SING N N 20 
NBS "C1'" "C2'"  SING N N 21 
NBS "C1'" "H1'"  SING N N 22 
NBS N9    C4     SING Y N 23 
NBS N9    C8     SING Y N 24 
NBS C4    N3     DOUB Y N 25 
NBS C4    C5     SING Y N 26 
NBS N3    C2     SING Y N 27 
NBS C2    N1     DOUB Y N 28 
NBS C2    H2     SING N N 29 
NBS N1    C6     SING Y N 30 
NBS C6    N6     SING N N 31 
NBS C6    C5     DOUB Y N 32 
NBS N6    CB1    SING N N 33 
NBS N6    H6     SING N N 34 
NBS CB1   CB2    SING N N 35 
NBS CB1   HB11   SING N N 36 
NBS CB1   HB12   SING N N 37 
NBS CB2   CB3    DOUB Y N 38 
NBS CB2   CB7    SING Y N 39 
NBS CB3   CB4    SING Y N 40 
NBS CB3   HB3    SING N N 41 
NBS CB4   CB5    DOUB Y N 42 
NBS CB4   HB4    SING N N 43 
NBS CB5   CB6    SING Y N 44 
NBS CB5   HB5    SING N N 45 
NBS CB6   CB7    DOUB Y N 46 
NBS CB6   HB6    SING N N 47 
NBS CB7   HB7    SING N N 48 
NBS C5    N7     SING Y N 49 
NBS N7    C8     DOUB Y N 50 
NBS C8    H8     SING N N 51 
NBS "C2'" "O2'"  SING N N 52 
NBS "C2'" "C3'"  SING N N 53 
NBS "C2'" "H2'"  SING N N 54 
NBS "O2'" "HO'2" SING N N 55 
NBS "C3'" "O3'"  SING N N 56 
NBS "C3'" "H3'"  SING N N 57 
NBS "O3'" "HO'3" SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NBS SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCC4OC(n2cnc1c(ncnc12)NCc3ccccc3)C(O)C4O" 
NBS SMILES_CANONICAL CACTVS               3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P@](O)(=O)O[P](O)(O)=O)n2cnc3c(NCc4ccccc4)ncnc23" 
NBS SMILES           CACTVS               3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)n2cnc3c(NCc4ccccc4)ncnc23" 
NBS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CNc2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)CO[P@@](=O)(O)OP(=O)(O)O)O)O" 
NBS SMILES           "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CNc2c3c(ncn2)n(cn3)C4C(C(C(O4)COP(=O)(O)OP(=O)(O)O)O)O" 
NBS InChI            InChI                1.03  
"InChI=1S/C17H21N5O10P2/c23-13-11(7-30-34(28,29)32-33(25,26)27)31-17(14(13)24)22-9-21-12-15(19-8-20-16(12)22)18-6-10-4-2-1-3-5-10/h1-5,8-9,11,13-14,17,23-24H,6-7H2,(H,28,29)(H,18,19,20)(H2,25,26,27)/t11-,13-,14-,17-/m1/s1" 
NBS InChIKey         InChI                1.03  MRHGMAGSDAQUFH-LSCFUAHRSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NBS "SYSTEMATIC NAME" ACDLabs              10.04 
;N-benzyladenosine 5'-(trihydrogen diphosphate)
;
NBS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-[6-(phenylmethylamino)purin-9-yl]oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NBS "Create component"  2002-01-18 RCSB 
NBS "Modify descriptor" 2011-06-04 RCSB 
# 
