data_L6S
#

_chem_comp.id                                   L6S
_chem_comp.name                                 6-O-sulfo-alpha-L-galactopyranose
_chem_comp.type                                 "L-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O9 S"
_chem_comp.mon_nstd_parent_comp_id              GXL
_chem_comp.pdbx_synonyms                        "6-O-sulfo-alpha-L-galactose; 6-O-sulfo-L-galactose; 6-O-sulfo-galactose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-08-27
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       260.219
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L6S
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3ILF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  L6S  6-O-sulfo-alpha-L-galactose  PDB  ?  
2  L6S  6-O-sulfo-L-galactose        PDB  ?  
3  L6S  6-O-sulfo-galactose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L6S  O1S   O1S   O  0  1  N  N  N  14.338   9.175   4.923   3.343  -0.867   1.118  O1S   L6S   1  
L6S  O2S   O2S   O  0  1  N  N  N  12.406  10.293   5.855   4.135   1.289   0.134  O2S   L6S   2  
L6S  O3S   O3S   O  0  1  N  N  N  12.255   7.932   5.142   3.861  -0.654  -1.172  O3S   L6S   3  
L6S  C1    C1    C  0  1  N  N  R  13.687   5.902  10.170  -2.080   1.449   0.488  C1    L6S   4  
L6S  C2    C2    C  0  1  N  N  S  12.727   5.782  11.269  -3.135   0.339   0.499  C2    L6S   5  
L6S  C3    C3    C  0  1  N  N  R  12.539   7.230  11.684  -2.815  -0.671  -0.607  C3    L6S   6  
L6S  C4    C4    C  0  1  N  N  S  12.397   8.267  10.605  -1.398  -1.214  -0.392  C4    L6S   7  
L6S  C5    C5    C  0  1  N  N  S  13.152   7.894   9.338  -0.410  -0.044  -0.369  C5    L6S   8  
L6S  C6    C6    C  0  1  N  N  N  12.595   8.746   8.208   0.999  -0.573  -0.095  C6    L6S   9  
L6S  O1    O1    O  0  1  N  Y  N  15.137   6.029  10.441  -2.131   2.142  -0.761  O1    L6S  10  
L6S  O2    O2    O  0  1  N  N  N  13.154   5.014  12.385  -4.427   0.906   0.268  O2    L6S  11  
L6S  O3    O3    O  0  1  N  N  N  11.622   7.389  12.778  -3.752  -1.748  -0.557  O3    L6S  12  
L6S  O4    O4    O  0  1  N  N  N  11.003   7.849  10.378  -1.339  -1.914   0.852  O4    L6S  13  
L6S  O5    O5    O  0  1  N  N  N  13.159   6.485   9.022  -0.784   0.873   0.661  O5    L6S  14  
L6S  O6    O6    O  0  1  N  N  N  13.532   8.621   7.133   1.937   0.501  -0.189  O6    L6S  15  
L6S  S1    S1    S  0  1  N  N  N  13.112   9.036   5.679   3.379   0.088   0.067  S1    L6S  16  
L6S  HO3S  HO3S  H  0  0  N  N  N  12.686   7.529   4.398   4.776  -0.964  -1.114  HO3S  L6S  17  
L6S  H1    H1    H  0  1  N  N  N  13.826   4.845   9.898  -2.279   2.148   1.300  H1    L6S  18  
L6S  H2    H2    H  0  1  N  N  N  11.826   5.246  10.935  -3.125  -0.164   1.466  H2    L6S  19  
L6S  H3    H3    H  0  1  N  N  N  13.541   7.482  12.062  -2.874  -0.179  -1.578  H3    L6S  20  
L6S  H4    H4    H  0  1  N  N  N  12.698   9.300  10.833  -1.141  -1.892  -1.206  H4    L6S  21  
L6S  H5    H5    H  0  1  N  N  N  14.219   8.106   9.499  -0.427   0.465  -1.333  H5    L6S  22  
L6S  H61   H6    H  0  1  N  N  N  11.601   8.388   7.903   1.038  -1.003   0.905  H61   L6S  23  
L6S  H62   H6A   H  0  1  N  N  N  12.499   9.796   8.522   1.249  -1.338  -0.830  H62   L6S  24  
L6S  HO1   HO1   H  0  1  N  Y  N  15.609   6.096   9.619  -1.488   2.860  -0.838  HO1   L6S  25  
L6S  HO2   HO2   H  0  1  N  Y  N  12.466   4.996  13.040  -4.693   1.559   0.929  HO2   L6S  26  
L6S  HO3   HO3   H  0  1  N  Y  N  11.543   8.311  12.994  -4.672  -1.475  -0.678  HO3   L6S  27  
L6S  HO4   HO4   H  0  1  N  Y  N  10.622   8.378   9.687  -1.944  -2.666   0.909  HO4   L6S  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L6S  O1S  S1    DOUB  N  N   1  
L6S  O2S  S1    DOUB  N  N   2  
L6S  O3S  S1    SING  N  N   3  
L6S  C1   C2    SING  N  N   4  
L6S  C1   O1    SING  N  N   5  
L6S  C1   O5    SING  N  N   6  
L6S  C2   C3    SING  N  N   7  
L6S  C2   O2    SING  N  N   8  
L6S  C3   C4    SING  N  N   9  
L6S  C3   O3    SING  N  N  10  
L6S  C4   C5    SING  N  N  11  
L6S  C4   O4    SING  N  N  12  
L6S  C5   C6    SING  N  N  13  
L6S  C5   O5    SING  N  N  14  
L6S  C6   O6    SING  N  N  15  
L6S  O6   S1    SING  N  N  16  
L6S  O3S  HO3S  SING  N  N  17  
L6S  C1   H1    SING  N  N  18  
L6S  C2   H2    SING  N  N  19  
L6S  C3   H3    SING  N  N  20  
L6S  C4   H4    SING  N  N  21  
L6S  C5   H5    SING  N  N  22  
L6S  C6   H61   SING  N  N  23  
L6S  C6   H62   SING  N  N  24  
L6S  O1   HO1   SING  N  N  25  
L6S  O2   HO2   SING  N  N  26  
L6S  O3   HO3   SING  N  N  27  
L6S  O4   HO4   SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L6S  SMILES            ACDLabs               11.02  "O=S(=O)(O)OCC1OC(O)C(O)C(O)C1O"  
L6S  SMILES_CANONICAL  CACTVS                3.352  "O[C@@H]1O[C@@H](CO[S](O)(=O)=O)[C@@H](O)[C@@H](O)[C@@H]1O"  
L6S  SMILES            CACTVS                3.352  "O[CH]1O[CH](CO[S](O)(=O)=O)[CH](O)[CH](O)[CH]1O"  
L6S  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C([C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O)OS(=O)(=O)O"  
L6S  SMILES            "OpenEye OEToolkits"  1.7.0  "C(C1C(C(C(C(O1)O)O)O)O)OS(=O)(=O)O"  
L6S  InChI             InChI                 1.03   "InChI=1S/C6H12O9S/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H,11,12,13)/t2-,3+,4+,5-,6+/m0/s1"  
L6S  InChIKey          InChI                 1.03   OKUVUONOJCDUJY-SXUWKVJYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L6S  "SYSTEMATIC NAME"                      ACDLabs               11.02  6-O-sulfo-alpha-L-galactopyranose  
L6S  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.6.1  "[(2S,3S,4R,5S,6R)-3,4,5,6-tetrahydroxyoxan-2-yl]methyl hydrogen sulfate"  
L6S  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    LGalp[6S]a  
L6S  "COMMON NAME"                          GMML                  1.0    6-sulfo-a-L-galactopyranose  
L6S  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-L-Galp6SO3  
#
_pdbx_chem_comp_related.comp_id            L6S
_pdbx_chem_comp_related.related_comp_id    GXL
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  L6S  C1   GXL  C1   "Carbohydrate core"  
 2  L6S  C2   GXL  C2   "Carbohydrate core"  
 3  L6S  C3   GXL  C3   "Carbohydrate core"  
 4  L6S  C4   GXL  C4   "Carbohydrate core"  
 5  L6S  C5   GXL  C5   "Carbohydrate core"  
 6  L6S  C6   GXL  C6   "Carbohydrate core"  
 7  L6S  O1   GXL  O1   "Carbohydrate core"  
 8  L6S  O2   GXL  O2   "Carbohydrate core"  
 9  L6S  O3   GXL  O3   "Carbohydrate core"  
10  L6S  O4   GXL  O4   "Carbohydrate core"  
11  L6S  O5   GXL  O5   "Carbohydrate core"  
12  L6S  O6   GXL  O6   "Carbohydrate core"  
13  L6S  H1   GXL  H1   "Carbohydrate core"  
14  L6S  H2   GXL  H2   "Carbohydrate core"  
15  L6S  H3   GXL  H3   "Carbohydrate core"  
16  L6S  H4   GXL  H4   "Carbohydrate core"  
17  L6S  H5   GXL  H5   "Carbohydrate core"  
18  L6S  H61  GXL  H61  "Carbohydrate core"  
19  L6S  H62  GXL  H62  "Carbohydrate core"  
20  L6S  HO1  GXL  HO1  "Carbohydrate core"  
21  L6S  HO2  GXL  HO2  "Carbohydrate core"  
22  L6S  HO3  GXL  HO3  "Carbohydrate core"  
23  L6S  HO4  GXL  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
L6S  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
L6S  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
L6S  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
L6S  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L6S  "Create component"          2009-08-27  PDBJ  
L6S  "Modify descriptor"         2011-06-04  RCSB  
L6S  "Other modification"        2020-07-03  RCSB  
L6S  "Modify parent residue"     2020-07-17  RCSB  
L6S  "Modify name"               2020-07-17  RCSB  
L6S  "Modify synonyms"           2020-07-17  RCSB  
L6S  "Modify linking type"       2020-07-17  RCSB  
L6S  "Modify atom id"            2020-07-17  RCSB  
L6S  "Modify component atom id"  2020-07-17  RCSB  
L6S  "Modify leaving atom flag"  2020-07-17  RCSB  
##
