data_L1S
#

_chem_comp.id                                   L1S
_chem_comp.name                                 "methyl 2-{4-[4-(7-carbamoyl-1H-benzimidazol-2-yl)benzene-1-carbonyl]piperazin-1-yl}pyrimidine-5-carboxylate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H23 N7 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-01-31
_chem_comp.pdbx_modified_date                   2020-01-31
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       485.495
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L1S
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6NTU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L1S  O3   O1   O  0  1  N  N  N    0.510  38.252   8.610  -7.329   0.602  -2.537  O3   L1S   1  
L1S  C4   C1   C  0  1  Y  N  N  -12.458  43.762  14.005   5.087  -0.259   0.396  C4   L1S   2  
L1S  C5   C2   C  0  1  N  N  N  -10.503  42.622  12.986   2.747  -0.296   0.591  C5   L1S   3  
L1S  C6   C3   C  0  1  N  N  N   -9.741  41.423  13.526   1.585  -1.182   1.052  C6   L1S   4  
L1S  N1   N1   N  0  1  N  N  N  -11.173  43.347  14.071   3.997  -1.066   0.647  N1   L1S   5  
L1S  C7   C4   C  0  1  N  N  N   -7.521  41.769  14.608   0.474  -2.842  -0.371  C7   L1S   6  
L1S  C8   C5   C  0  1  Y  N  N   -6.846  40.894  13.604  -0.808  -2.141  -0.152  C8   L1S   7  
L1S  N2   N2   N  0  1  N  N  N   -8.852  41.839  14.610   1.591  -2.415   0.251  N2   L1S   8  
L1S  C9   C6   C  0  1  Y  N  N   -7.213  39.580  13.333  -1.690  -1.947  -1.218  C9   L1S   9  
L1S  C10  C7   C  0  1  Y  N  N   -6.501  38.831  12.407  -2.884  -1.294  -1.013  C10  L1S  10  
L1S  C11  C8   C  0  1  Y  N  N   -5.416  39.389  11.734  -3.214  -0.824   0.260  C11  L1S  11  
L1S  C12  C9   C  0  1  Y  N  N   -4.605  38.603  10.809  -4.494  -0.117   0.479  C12  L1S  12  
L1S  N3   N3   N  0  1  Y  N  N   -3.327  38.847  10.563  -5.434   0.129  -0.487  N3   L1S  13  
L1S  C13  C10  C  0  1  Y  N  N   -2.954  37.867   9.656  -6.470   0.803   0.114  C13  L1S  14  
L1S  C14  C11  C  0  1  Y  N  N   -1.716  37.568   9.074  -7.692   1.315  -0.344  C14  L1S  15  
L1S  C15  C12  C  0  1  N  N  N   -0.548  38.488   9.234  -8.074   1.169  -1.761  C15  L1S  16  
L1S  N4   N4   N  0  1  N  N  N   -0.663  39.528  10.071  -9.250   1.663  -2.197  N4   L1S  17  
L1S  C16  C13  C  0  1  Y  N  N   -1.608  36.431   8.269  -8.543   1.964   0.549  C16  L1S  18  
L1S  C17  C14  C  0  1  Y  N  N   -2.710  35.627   8.011  -8.186   2.102   1.879  C17  L1S  19  
L1S  C18  C15  C  0  1  Y  N  N   -3.948  35.923   8.554  -6.988   1.603   2.342  C18  L1S  20  
L1S  C19  C16  C  0  1  Y  N  N   -4.038  37.039   9.368  -6.116   0.948   1.467  C19  L1S  21  
L1S  N5   N5   N  0  1  Y  N  N   -5.084  37.539  10.116  -4.904   0.363   1.627  N5   L1S  22  
L1S  C20  C17  C  0  1  Y  N  N   -5.064  40.702  12.000  -2.332  -1.018   1.326  C20  L1S  23  
L1S  C21  C18  C  0  1  Y  N  N   -5.770  41.448  12.920  -1.140  -1.676   1.123  C21  L1S  24  
L1S  O2   O2   O  0  1  N  N  N   -6.852  42.349  15.426   0.522  -3.803  -1.114  O2   L1S  25  
L1S  C22  C19  C  0  1  N  N  N   -9.585  42.479  15.708   2.849  -3.171   0.147  C22  L1S  26  
L1S  C23  C20  C  0  1  N  N  N  -10.305  43.696  15.199   3.962  -2.207  -0.278  C23  L1S  27  
L1S  N    N6   N  0  1  Y  N  N  -13.152  43.418  12.911   4.891   1.030   0.155  N    L1S  28  
L1S  C3   C21  C  0  1  Y  N  N  -14.423  43.838  12.874   5.907   1.836  -0.090  C3   L1S  29  
L1S  N6   N7   N  0  1  Y  N  N  -12.920  44.459  15.057   6.301  -0.795   0.407  N6   L1S  30  
L1S  C24  C22  C  0  1  Y  N  N  -14.198  44.840  14.982   7.369  -0.057   0.171  C24  L1S  31  
L1S  C2   C23  C  0  1  Y  N  N  -15.013  44.574  13.893   7.206   1.310  -0.093  C2   L1S  32  
L1S  C1   C24  C  0  1  N  N  N  -16.433  45.021  13.830   8.371   2.173  -0.362  C1   L1S  33  
L1S  O1   O3   O  0  1  N  N  N  -17.139  44.863  12.875   8.211   3.357  -0.584  O1   L1S  34  
L1S  O    O4   O  0  1  N  N  N  -16.835  45.608  14.957   9.612   1.648  -0.360  O    L1S  35  
L1S  C    C25  C  0  1  N  N  N  -16.628  47.039  15.054  10.712   2.557  -0.633  C    L1S  36  
L1S  H1   H1   H  0  1  N  N  N   -9.798  43.299  12.481   2.570   0.035  -0.432  H1   L1S  37  
L1S  H2   H2   H  0  1  N  N  N  -11.258  42.274  12.265   2.826   0.572   1.246  H2   L1S  38  
L1S  H3   H3   H  0  1  N  N  N  -10.456  40.679  13.907   1.708  -1.429   2.106  H3   L1S  39  
L1S  H4   H4   H  0  1  N  N  N   -9.144  40.977  12.717   0.642  -0.654   0.904  H4   L1S  40  
L1S  H5   H5   H  0  1  N  N  N   -8.056  39.141  13.846  -1.435  -2.310  -2.202  H5   L1S  41  
L1S  H6   H6   H  0  1  N  N  N   -6.789  37.810  12.207  -3.566  -1.144  -1.837  H6   L1S  42  
L1S  H7   H7   H  0  1  N  N  N   -2.758  39.575  10.946  -5.378  -0.124  -1.422  H7   L1S  43  
L1S  H8   H8   H  0  1  N  N  N    0.112  40.144  10.212  -9.502   1.567  -3.128  H8   L1S  44  
L1S  H9   H9   H  0  1  N  N  N   -1.524  39.688  10.554  -9.845   2.116  -1.578  H9   L1S  45  
L1S  H10  H10  H  0  1  N  N  N   -0.651  36.173   7.840  -9.485   2.362   0.202  H10  L1S  46  
L1S  H11  H11  H  0  1  N  N  N   -2.600  34.759   7.378  -8.854   2.607   2.561  H11  L1S  47  
L1S  H12  H12  H  0  1  N  N  N   -4.811  35.307   8.350  -6.722   1.719   3.382  H12  L1S  48  
L1S  H14  H14  H  0  1  N  N  N   -4.227  41.146  11.481  -2.587  -0.654   2.311  H14  L1S  49  
L1S  H15  H15  H  0  1  N  N  N   -5.484  42.472  13.111  -0.459  -1.825   1.947  H15  L1S  50  
L1S  H16  H16  H  0  1  N  N  N  -10.316  41.769  16.122   3.093  -3.609   1.114  H16  L1S  51  
L1S  H17  H17  H  0  1  N  N  N   -8.877  42.777  16.495   2.741  -3.961  -0.596  H17  L1S  52  
L1S  H18  H18  H  0  1  N  N  N   -9.566  44.442  14.870   3.767  -1.849  -1.289  H18  L1S  53  
L1S  H19  H19  H  0  1  N  N  N  -10.917  44.119  16.009   4.921  -2.725  -0.253  H19  L1S  54  
L1S  H20  H20  H  0  1  N  N  N  -15.019  43.592  12.008   5.740   2.885  -0.285  H20  L1S  55  
L1S  H21  H21  H  0  1  N  N  N  -14.619  45.384  15.814   8.354  -0.499   0.182  H21  L1S  56  
L1S  H22  H22  H  0  1  N  N  N  -17.000  47.399  16.025  10.582   2.999  -1.620  H22  L1S  57  
L1S  H23  H23  H  0  1  N  N  N  -15.554  47.261  14.968  10.726   3.346   0.120  H23  L1S  58  
L1S  H24  H24  H  0  1  N  N  N  -17.173  47.544  14.243  11.653   2.008  -0.601  H24  L1S  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L1S  C17  C16  DOUB  Y  N   1  
L1S  C17  C18  SING  Y  N   2  
L1S  C16  C14  SING  Y  N   3  
L1S  C18  C19  DOUB  Y  N   4  
L1S  O3   C15  DOUB  N  N   5  
L1S  C14  C15  SING  N  N   6  
L1S  C14  C13  DOUB  Y  N   7  
L1S  C15  N4   SING  N  N   8  
L1S  C19  C13  SING  Y  N   9  
L1S  C19  N5   SING  Y  N  10  
L1S  C13  N3   SING  Y  N  11  
L1S  N5   C12  DOUB  Y  N  12  
L1S  N3   C12  SING  Y  N  13  
L1S  C12  C11  SING  N  N  14  
L1S  C11  C20  DOUB  Y  N  15  
L1S  C11  C10  SING  Y  N  16  
L1S  C20  C21  SING  Y  N  17  
L1S  C10  C9   DOUB  Y  N  18  
L1S  C3   N    DOUB  Y  N  19  
L1S  C3   C2   SING  Y  N  20  
L1S  O1   C1   DOUB  N  N  21  
L1S  N    C4   SING  Y  N  22  
L1S  C21  C8   DOUB  Y  N  23  
L1S  C5   C6   SING  N  N  24  
L1S  C5   N1   SING  N  N  25  
L1S  C9   C8   SING  Y  N  26  
L1S  C6   N2   SING  N  N  27  
L1S  C8   C7   SING  N  N  28  
L1S  C1   C2   SING  N  N  29  
L1S  C1   O    SING  N  N  30  
L1S  C2   C24  DOUB  Y  N  31  
L1S  C4   N1   SING  N  N  32  
L1S  C4   N6   DOUB  Y  N  33  
L1S  N1   C23  SING  N  N  34  
L1S  C7   N2   SING  N  N  35  
L1S  C7   O2   DOUB  N  N  36  
L1S  N2   C22  SING  N  N  37  
L1S  O    C    SING  N  N  38  
L1S  C24  N6   SING  Y  N  39  
L1S  C23  C22  SING  N  N  40  
L1S  C5   H1   SING  N  N  41  
L1S  C5   H2   SING  N  N  42  
L1S  C6   H3   SING  N  N  43  
L1S  C6   H4   SING  N  N  44  
L1S  C9   H5   SING  N  N  45  
L1S  C10  H6   SING  N  N  46  
L1S  N3   H7   SING  N  N  47  
L1S  N4   H8   SING  N  N  48  
L1S  N4   H9   SING  N  N  49  
L1S  C16  H10  SING  N  N  50  
L1S  C17  H11  SING  N  N  51  
L1S  C18  H12  SING  N  N  52  
L1S  C20  H14  SING  N  N  53  
L1S  C21  H15  SING  N  N  54  
L1S  C22  H16  SING  N  N  55  
L1S  C22  H17  SING  N  N  56  
L1S  C23  H18  SING  N  N  57  
L1S  C23  H19  SING  N  N  58  
L1S  C3   H20  SING  N  N  59  
L1S  C24  H21  SING  N  N  60  
L1S  C    H22  SING  N  N  61  
L1S  C    H23  SING  N  N  62  
L1S  C    H24  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L1S  SMILES            ACDLabs               12.01  "O=C(c5c4nc(c3ccc(C(N2CCN(c1ncc(cn1)C(OC)=O)CC2)=O)cc3)nc4ccc5)N"  
L1S  InChI             InChI                 1.03   "InChI=1S/C25H23N7O4/c1-36-24(35)17-13-27-25(28-14-17)32-11-9-31(10-12-32)23(34)16-7-5-15(6-8-16)22-29-19-4-2-3-18(21(26)33)20(19)30-22/h2-8,13-14H,9-12H2,1H3,(H2,26,33)(H,29,30)"  
L1S  InChIKey          InChI                 1.03   ASPUHGRKEUIGTD-UHFFFAOYSA-N  
L1S  SMILES_CANONICAL  CACTVS                3.385  "COC(=O)c1cnc(nc1)N2CCN(CC2)C(=O)c3ccc(cc3)c4[nH]c5c(cccc5C(N)=O)n4"  
L1S  SMILES            CACTVS                3.385  "COC(=O)c1cnc(nc1)N2CCN(CC2)C(=O)c3ccc(cc3)c4[nH]c5c(cccc5C(N)=O)n4"  
L1S  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COC(=O)c1cnc(nc1)N2CCN(CC2)C(=O)c3ccc(cc3)c4[nH]c5c(cccc5n4)C(=O)N"  
L1S  SMILES            "OpenEye OEToolkits"  2.0.7  "COC(=O)c1cnc(nc1)N2CCN(CC2)C(=O)c3ccc(cc3)c4[nH]c5c(cccc5n4)C(=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L1S  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 2-{4-[4-(7-carbamoyl-1H-benzimidazol-2-yl)benzene-1-carbonyl]piperazin-1-yl}pyrimidine-5-carboxylate"  
L1S  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "methyl 2-[4-[4-(7-aminocarbonyl-1~{H}-benzimidazol-2-yl)phenyl]carbonylpiperazin-1-yl]pyrimidine-5-carboxylate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L1S  "Create component"  2019-01-31  RCSB  
L1S  "Initial release"   2020-02-05  RCSB  
##
