data_JVS
#

_chem_comp.id                                   JVS
_chem_comp.name                                 1-deoxy-1-fluoro-2-O-phosphono-alpha-D-gluco-hept-2-ulopyranose
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 F O9 P"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        
;1-deoxy-1-fluoro-2-O-phosphono-alpha-D-gluco-hept-2-ulose; 1-deoxy-1-fluoro-2-O-phosphono-D-gluco-hept-2-ulose;
1-deoxy-1-fluoro-2-O-phosphono-gluco-hept-2-ulose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-10-04
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       292.153
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JVS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MNV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  JVS  1-deoxy-1-fluoro-2-O-phosphono-alpha-D-gluco-hept-2-ulose  PDB  ?  
2  JVS  1-deoxy-1-fluoro-2-O-phosphono-D-gluco-hept-2-ulose        PDB  ?  
3  JVS  1-deoxy-1-fluoro-2-O-phosphono-gluco-hept-2-ulose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JVS  C3   C02  C  0  1  N  N  S  27.231  53.237  16.150   2.168  -1.007   0.510  C3   JVS   1  
JVS  C4   C03  C  0  1  N  N  S  28.342  52.402  16.647   2.513   0.418   0.067  C4   JVS   2  
JVS  C5   C05  C  0  1  N  N  R  28.438  51.105  15.842   1.220   1.222  -0.093  C5   JVS   3  
JVS  C6   C06  C  0  1  N  N  N  29.560  50.276  16.362   1.552   2.629  -0.593  C6   JVS   4  
JVS  C1   C09  C  0  1  N  N  S  25.995  51.168  15.541  -0.025  -0.750  -0.653  C1   JVS   5  
JVS  C15  C15  C  0  1  N  N  N  24.763  50.385  15.855  -0.953  -1.337  -1.719  C15  JVS   6  
JVS  C2   C17  C  0  1  N  N  R  25.960  52.473  16.349   1.217  -1.633  -0.515  C2   JVS   7  
JVS  F16  F16  F  0  1  N  N  N  24.707  50.352  17.220  -2.011  -0.452  -1.954  F16  JVS   8  
JVS  O6   O07  O  0  1  N  N  N  29.058  49.441  17.366   0.359   3.414  -0.633  O6   JVS   9  
JVS  O5   O08  O  0  1  N  N  N  27.147  50.343  15.926   0.369   0.569  -1.037  O5   JVS  10  
JVS  O1   O10  O  0  1  N  N  N  26.162  51.465  14.177  -0.713  -0.696   0.599  O1   JVS  11  
JVS  O1P  O1P  O  0  1  N  N  N  23.932  52.682  13.559  -2.042   1.539   0.217  O1P  JVS  12  
JVS  O2   O2   O  0  1  N  N  N  24.832  53.285  16.000   0.831  -2.937  -0.075  O2   JVS  13  
JVS  O2P  O2P  O  0  1  N  N  N  25.606  52.239  11.790  -3.177  -0.709   0.050  O2P  JVS  14  
JVS  O3   O3   O  0  1  N  N  N  27.146  54.505  16.874   3.364  -1.786   0.591  O3   JVS  15  
JVS  O3P  O3P  O  0  1  N  N  N  24.302  50.380  12.741  -2.511   0.080   2.353  O3P  JVS  16  
JVS  O4   O4   O  0  1  N  N  N  29.606  53.108  16.619   3.343   1.037   1.053  O4   JVS  17  
JVS  P    P    P  0  1  N  N  N  24.974  51.691  13.060  -2.134   0.037   0.789  P    JVS  18  
JVS  H3   H1   H  0  1  N  N  N  27.371  53.433  15.077   1.683  -0.978   1.486  H3   JVS  19  
JVS  H4   H2   H  0  1  N  N  N  28.121  52.127  17.689   3.042   0.385  -0.886  H4   JVS  20  
JVS  H5   H3   H  0  1  N  N  N  28.635  51.359  14.790   0.712   1.288   0.869  H5   JVS  21  
JVS  H61  H4   H  0  1  N  N  N  29.982  49.668  15.548   2.272   3.094   0.081  H61  JVS  22  
JVS  H62  H5   H  0  1  N  N  N  30.343  50.928  16.777   1.980   2.567  -1.594  H62  JVS  23  
JVS  H6   H6   H  0  1  N  N  N  23.873  50.882  15.443  -0.394  -1.488  -2.643  H6   JVS  24  
JVS  H7   H7   H  0  1  N  N  N  24.837  49.367  15.446  -1.347  -2.292  -1.372  H7   JVS  25  
JVS  H2   H8   H  0  1  N  N  N  25.888  52.203  17.413   1.720  -1.707  -1.480  H2   JVS  26  
JVS  HO6  H9   H  0  1  N  Y  N  29.760  48.903  17.711   0.495   4.320  -0.942  HO6  JVS  27  
JVS  H10  H10  H  0  1  N  N  N  23.899  53.429  12.973  -1.377   2.088   0.655  H10  JVS  28  
JVS  HO2  H11  H  0  1  N  Y  N  24.842  54.082  16.518   1.571  -3.549   0.038  HO2  JVS  29  
JVS  HO3  H12  H  0  1  N  Y  N  27.951  54.995  16.751   4.012  -1.446   1.223  HO3  JVS  30  
JVS  H13  H13  H  0  1  N  N  N  24.418  50.180  11.820  -3.356   0.510   2.542  H13  JVS  31  
JVS  HO4  H14  H  0  1  N  Y  N  29.532  53.910  17.122   3.600   1.943   0.836  HO4  JVS  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JVS  O2P  P    DOUB  N  N   1  
JVS  O3P  P    SING  N  N   2  
JVS  P    O1P  SING  N  N   3  
JVS  P    O1   SING  N  N   4  
JVS  O1   C1   SING  N  N   5  
JVS  C1   C15  SING  N  N   6  
JVS  C1   O5   SING  N  N   7  
JVS  C1   C2   SING  N  N   8  
JVS  C5   O5   SING  N  N   9  
JVS  C5   C6   SING  N  N  10  
JVS  C5   C4   SING  N  N  11  
JVS  C15  F16  SING  N  N  12  
JVS  O2   C2   SING  N  N  13  
JVS  C3   C2   SING  N  N  14  
JVS  C3   C4   SING  N  N  15  
JVS  C3   O3   SING  N  N  16  
JVS  C6   O6   SING  N  N  17  
JVS  O4   C4   SING  N  N  18  
JVS  C3   H3   SING  N  N  19  
JVS  C4   H4   SING  N  N  20  
JVS  C5   H5   SING  N  N  21  
JVS  C6   H61  SING  N  N  22  
JVS  C6   H62  SING  N  N  23  
JVS  C15  H6   SING  N  N  24  
JVS  C15  H7   SING  N  N  25  
JVS  C2   H2   SING  N  N  26  
JVS  O6   HO6  SING  N  N  27  
JVS  O1P  H10  SING  N  N  28  
JVS  O2   HO2  SING  N  N  29  
JVS  O3   HO3  SING  N  N  30  
JVS  O3P  H13  SING  N  N  31  
JVS  O4   HO4  SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JVS  SMILES            ACDLabs               12.01  "C1(C(C(CF)(OC(C1O)CO)OP(O)(=O)O)O)O"  
JVS  InChI             InChI                 1.03   "InChI=1S/C7H14FO9P/c8-2-7(17-18(13,14)15)6(12)5(11)4(10)3(1-9)16-7/h3-6,9-12H,1-2H2,(H2,13,14,15)/t3-,4-,5+,6-,7-/m1/s1"  
JVS  InChIKey          InChI                 1.03   QZQSCDCQGPJKOV-XUUWZHRGSA-N  
JVS  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@](CF)(O[P](O)(O)=O)[C@H](O)[C@@H](O)[C@@H]1O"  
JVS  SMILES            CACTVS                3.385  "OC[CH]1O[C](CF)(O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O"  
JVS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@@](O1)(CF)OP(=O)(O)O)O)O)O)O"  
JVS  SMILES            "OpenEye OEToolkits"  2.0.6  "C(C1C(C(C(C(O1)(CF)OP(=O)(O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JVS  "SYSTEMATIC NAME"  ACDLabs               12.01  1-deoxy-1-fluoro-2-O-phosphono-alpha-D-gluco-hept-2-ulopyranose  
JVS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  
;[(2~{S},3~{R},4~{S},5~{S},6~{R})-2-(fluoranylmethyl)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] dihydrogen
phosphate
;
  
#
_pdbx_chem_comp_related.comp_id            JVS
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  JVS  C3   GLC  C3   "Carbohydrate core"  
 2  JVS  C4   GLC  C4   "Carbohydrate core"  
 3  JVS  C5   GLC  C5   "Carbohydrate core"  
 4  JVS  C6   GLC  C6   "Carbohydrate core"  
 5  JVS  C1   GLC  C1   "Carbohydrate core"  
 6  JVS  C2   GLC  C2   "Carbohydrate core"  
 7  JVS  O6   GLC  O6   "Carbohydrate core"  
 8  JVS  O5   GLC  O5   "Carbohydrate core"  
 9  JVS  O1   GLC  O1   "Carbohydrate core"  
10  JVS  O2   GLC  O2   "Carbohydrate core"  
11  JVS  O3   GLC  O3   "Carbohydrate core"  
12  JVS  O4   GLC  O4   "Carbohydrate core"  
13  JVS  H3   GLC  H3   "Carbohydrate core"  
14  JVS  HO2  GLC  HO2  "Carbohydrate core"  
15  JVS  HO3  GLC  HO3  "Carbohydrate core"  
16  JVS  HO4  GLC  HO4  "Carbohydrate core"  
17  JVS  H4   GLC  H4   "Carbohydrate core"  
18  JVS  H5   GLC  H5   "Carbohydrate core"  
19  JVS  H61  GLC  H61  "Carbohydrate core"  
20  JVS  H62  GLC  H62  "Carbohydrate core"  
21  JVS  H2   GLC  H2   "Carbohydrate core"  
22  JVS  HO6  GLC  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
JVS  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
JVS  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
JVS  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
JVS  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JVS  "Create component"          2018-10-04  RCSB  
JVS  "Initial release"           2019-07-31  RCSB  
JVS  "Other modification"        2020-07-03  RCSB  
JVS  "Modify parent residue"     2020-07-17  RCSB  
JVS  "Modify synonyms"           2020-07-17  RCSB  
JVS  "Modify internal type"      2020-07-17  RCSB  
JVS  "Modify linking type"       2020-07-17  RCSB  
JVS  "Modify atom id"            2020-07-17  RCSB  
JVS  "Modify component atom id"  2020-07-17  RCSB  
JVS  "Modify leaving atom flag"  2020-07-17  RCSB  
##
