data_J6S
# 
_chem_comp.id                                    J6S 
_chem_comp.name                                  "(3E,5E)-6-(4-nitrophenyl)-2-oxohexa-3,5-dienoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H9 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "4-nitro-cinnamylidenepyruvate, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-08-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        247.204 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J6S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6EEJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J6S C1  C1  C 0  1 N N N N N N 37.354 26.004 13.083 5.703  -0.722 -0.002 C1  J6S 1  
J6S C10 C2  C 0  1 Y N N N N N 34.367 20.285 20.098 -4.143 -0.117 -0.001 C10 J6S 2  
J6S C2  C3  C 0  1 N N N N N N 37.481 26.444 14.511 4.592  0.270  -0.001 C2  J6S 3  
J6S C3  C4  C 0  1 N N N N N N 37.190 25.477 15.626 3.257  -0.170 -0.001 C3  J6S 4  
J6S C4  C5  C 0  1 N N N N N N 36.245 24.503 15.460 2.230  0.746  -0.000 C4  J6S 5  
J6S C5  C6  C 0  1 N N N N N N 35.697 23.793 16.653 0.896  0.306  -0.001 C5  J6S 6  
J6S C6  C7  C 0  1 N N N N N N 36.235 22.605 17.047 -0.117 1.211  0.000  C6  J6S 7  
J6S C7  C8  C 0  1 Y N N N N N 35.582 21.797 18.118 -1.512 0.751  -0.000 C7  J6S 8  
J6S C8A C9  C 0  1 Y N N N N N 36.301 21.429 19.246 -2.560 1.680  0.001  C8A J6S 9  
J6S C8B C10 C 0  1 Y N N N N N 34.259 21.406 17.978 -1.802 -0.619 0.010  C8B J6S 10 
J6S C9A C11 C 0  1 Y N N N N N 35.692 20.672 20.236 -3.866 1.239  0.001  C9A J6S 11 
J6S C9B C12 C 0  1 Y N N N N N 33.649 20.652 18.969 -3.113 -1.042 0.004  C9B J6S 12 
J6S N11 N1  N 1  1 N N N N N N 33.742 19.506 21.119 -5.549 -0.581 -0.002 N11 J6S 13 
J6S O11 O1  O 0  1 N N N N N N 36.160 25.673 12.846 6.981  -0.300 -0.002 O11 J6S 14 
J6S O12 O2  O 0  1 N N N N N N 38.472 26.093 12.504 5.456  -1.910 0.002  O12 J6S 15 
J6S O13 O3  O -1 1 N N N N N N 32.532 19.339 21.112 -5.797 -1.773 -0.004 O13 J6S 16 
J6S O14 O4  O 0  1 N N N N N N 34.507 18.942 22.116 -6.458 0.230  -0.001 O14 J6S 17 
J6S H3  H3  H 0  1 N N N N N N 37.728 25.552 16.559 3.037  -1.228 -0.002 H3  J6S 18 
J6S H4  H4  H 0  1 N N N N N N 35.897 24.248 14.470 2.450  1.804  0.001  H4  J6S 19 
J6S H5  H5  H 0  1 N N N N N N 34.873 24.221 17.204 0.676  -0.751 -0.002 H5  J6S 20 
J6S H6  H6  H 0  1 N N N N N N 37.140 22.246 16.581 0.103  2.268  0.002  H6  J6S 21 
J6S H7  H7  H 0  1 N N N N N N 37.332 21.731 19.353 -2.345 2.738  -0.006 H7  J6S 22 
J6S H8  H8  H 0  1 N N N N N N 33.703 21.689 17.096 -0.999 -1.343 0.009  H8  J6S 23 
J6S H9  H9  H 0  1 N N N N N N 36.250 20.384 21.115 -4.675 1.954  0.001  H9  J6S 24 
J6S H10 H10 H 0  1 N N N N N N 32.617 20.351 18.862 -3.339 -2.099 0.003  H10 J6S 25 
J6S H11 H11 H 0  1 N N N N N N 36.080 25.405 11.938 7.668  -0.981 -0.002 H11 J6S 26 
J6S O1  O5  O 0  1 N Y N N N N 38.450 27.341 14.767 4.840  1.462  0.000  O1  J6S 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J6S O12 C1  DOUB N N 1  
J6S O11 C1  SING N N 2  
J6S C1  C2  SING N N 3  
J6S C2  C3  SING N N 4  
J6S C4  C3  DOUB N E 5  
J6S C4  C5  SING N N 6  
J6S C5  C6  DOUB N E 7  
J6S C6  C7  SING N N 8  
J6S C8B C7  DOUB Y N 9  
J6S C8B C9B SING Y N 10 
J6S C7  C8A SING Y N 11 
J6S C9B C10 DOUB Y N 12 
J6S C8A C9A DOUB Y N 13 
J6S C10 C9A SING Y N 14 
J6S C10 N11 SING N N 15 
J6S O13 N11 SING N N 16 
J6S N11 O14 DOUB N N 17 
J6S C3  H3  SING N N 18 
J6S C4  H4  SING N N 19 
J6S C5  H5  SING N N 20 
J6S C6  H6  SING N N 21 
J6S C8A H7  SING N N 22 
J6S C8B H8  SING N N 23 
J6S C9A H9  SING N N 24 
J6S C9B H10 SING N N 25 
J6S O11 H11 SING N N 26 
J6S C2  O1  DOUB N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J6S SMILES           ACDLabs              12.01 "C(C([C@H]=C\C=C\c1ccc([N+](=O)[O-])cc1)=O)(O)=O"                                              
J6S InChI            InChI                1.03  "InChI=1S/C12H9NO5/c14-11(12(15)16)4-2-1-3-9-5-7-10(8-6-9)13(17)18/h1-8H,(H,15,16)/b3-1+,4-2+" 
J6S InChIKey         InChI                1.03  YFKMPGYOVOFESP-ZPUQHVIOSA-N                                                                    
J6S SMILES_CANONICAL CACTVS               3.385 "OC(=O)C(=O)/C=C/C=C/c1ccc(cc1)[N+]([O-])=O"                                                   
J6S SMILES           CACTVS               3.385 "OC(=O)C(=O)C=CC=Cc1ccc(cc1)[N+]([O-])=O"                                                      
J6S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1/C=C/C=C/C(=O)C(=O)O)[N+](=O)[O-]"                                                   
J6S SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1C=CC=CC(=O)C(=O)O)[N+](=O)[O-]"                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
J6S "SYSTEMATIC NAME" ACDLabs              12.01 "(3E,5E)-6-(4-nitrophenyl)-2-oxohexa-3,5-dienoic acid"                  
J6S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{E},5~{E})-6-(4-nitrophenyl)-2-oxidanylidene-hexa-3,5-dienoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J6S "Create component" 2018-08-15 RCSB 
J6S "Modify synonyms"  2018-08-20 RCSB 
J6S "Initial release"  2019-08-14 RCSB 
J6S "Modify synonyms"  2021-03-13 RCSB 
J6S "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      J6S 
_pdbx_chem_comp_synonyms.name         "4-nitro-cinnamylidenepyruvate, bound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            J6S 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
