data_D9S
#

_chem_comp.id                                   D9S
_chem_comp.name                                 "2-{(3R,4S)-3-[(5-{[benzyl(methyl)amino]methyl}-1,2-oxazol-3-yl)methyl]piperidin-4-yl}-N-(1,3-thiazol-2-yl)acetamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H29 N5 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-10-23
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       439.574
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D9S
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QBN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D9S  C4   C1   C  0  1  Y  N  N  -13.221   2.793  -0.926  -8.459  -2.415   1.445  C4   D9S   1  
D9S  C5   C2   C  0  1  Y  N  N  -13.945   3.782  -0.291  -9.192  -1.347   1.927  C5   D9S   2  
D9S  C6   C3   C  0  1  Y  N  N  -13.287   4.715   0.489  -9.043  -0.095   1.360  C6   D9S   3  
D9S  N1   N1   N  0  1  Y  N  N   -8.708  -0.161   4.434  -1.672   2.035  -0.483  N1   D9S   4  
D9S  C7   C4   C  0  1  Y  N  N  -11.909   4.665   0.624  -8.163   0.089   0.311  C7   D9S   5  
D9S  C8   C5   C  0  1  N  N  N   -9.739   2.657   2.407  -4.246   0.006  -1.865  C8   D9S   6  
D9S  N2   N2   N  0  1  N  N  N  -13.309  -2.445   7.325   1.133   3.346   1.115  N2   D9S   7  
D9S  C9   C6   C  0  1  Y  N  N   -9.714   1.375   3.155  -2.991   0.589  -1.270  C9   D9S   8  
D9S  C10  C7   C  0  1  Y  N  N  -10.614   0.413   3.408  -1.855  -0.079  -0.959  C10  D9S   9  
D9S  C11  C8   C  0  1  Y  N  N   -9.938  -0.521   4.212  -1.002   0.920  -0.438  C11  D9S  10  
D9S  C12  C9   C  0  1  N  N  N  -10.455  -1.797   4.797   0.405   0.733   0.069  C12  D9S  11  
D9S  N3   N3   N  0  1  N  N  N   -8.653  -0.020   9.560   5.133  -1.510  -0.401  N3   D9S  12  
D9S  C13  C10  C  0  1  N  N  R  -11.568  -1.492   5.798   1.345   1.685  -0.672  C13  D9S  13  
D9S  C14  C11  C  0  1  N  N  N  -12.127  -2.745   6.465   0.982   3.132  -0.329  C14  D9S  14  
D9S  C15  C12  C  0  1  N  N  N  -12.986  -1.460   8.394   2.522   3.136   1.541  C15  D9S  15  
D9S  N4   N4   N  0  1  Y  N  N   -7.285   0.584  11.350   7.089  -2.862  -0.254  N4   D9S  16  
D9S  O1   O1   O  0  1  N  N  N   -9.420   1.360   7.903   5.287   0.625   0.182  O1   D9S  17  
D9S  C19  C13  C  0  1  N  N  N   -9.336   0.241   8.401   4.597  -0.286  -0.223  C19  D9S  18  
D9S  C20  C14  C  0  1  Y  N  N   -7.990   0.935  10.307   6.476  -1.728  -0.119  C20  D9S  19  
D9S  S    S1   S  0  1  Y  N  N   -8.000   2.634   9.971   7.562  -0.539   0.457  S    D9S  20  
D9S  C22  C15  C  0  1  Y  N  N   -6.981   2.877  11.324   8.864  -1.725   0.482  C22  D9S  21  
D9S  C21  C16  C  0  1  Y  N  N   -6.715   1.701  11.918   8.370  -2.891   0.061  C21  D9S  22  
D9S  C18  C17  C  0  1  N  N  N   -9.975  -0.970   7.748   3.140  -0.049  -0.529  C18  D9S  23  
D9S  C17  C18  C  0  1  N  N  S  -11.167  -0.513   6.908   2.790   1.413  -0.245  C17  D9S  24  
D9S  C16  C19  C  0  1  N  N  N  -12.374  -0.210   7.796   2.932   1.690   1.254  C16  D9S  25  
D9S  O    O2   O  0  1  Y  N  N   -8.544   1.068   3.752  -2.779   1.871  -0.942  O    D9S  26  
D9S  N    N5   N  0  1  N  N  N   -9.174   2.483   0.983  -5.145  -0.427  -0.787  N    D9S  27  
D9S  C    C20  C  0  1  N  N  N   -7.686   2.378   0.996  -4.563  -1.546  -0.034  C    D9S  28  
D9S  C1   C21  C  0  1  N  N  N   -9.662   3.667   0.078  -6.470  -0.780  -1.316  C1   D9S  29  
D9S  C2   C22  C  0  1  Y  N  N  -11.167   3.681  -0.016  -7.430  -0.980  -0.171  C2   D9S  30  
D9S  C3   C23  C  0  1  Y  N  N  -11.841   2.740  -0.786  -7.579  -2.232   0.395  C3   D9S  31  
D9S  H1   H1   H  0  1  N  N  N  -13.729   2.059  -1.533  -8.572  -3.393   1.891  H1   D9S  32  
D9S  H2   H2   H  0  1  N  N  N  -15.018   3.827  -0.403  -9.880  -1.490   2.747  H2   D9S  33  
D9S  H3   H3   H  0  1  N  N  N  -13.849   5.486   0.995  -9.616   0.740   1.737  H3   D9S  34  
D9S  H4   H4   H  0  1  N  N  N  -11.406   5.400   1.234  -8.047   1.066  -0.132  H4   D9S  35  
D9S  H5   H5   H  0  1  N  N  N   -9.131   3.399   2.946  -4.745   0.761  -2.473  H5   D9S  36  
D9S  H6   H6   H  0  1  N  N  N  -10.778   3.013   2.340  -3.989  -0.850  -2.489  H6   D9S  37  
D9S  H7   H7   H  0  1  N  N  N  -14.039  -2.072   6.752   0.808   4.264   1.380  H7   D9S  38  
D9S  H9   H9   H  0  1  N  N  N  -11.638   0.366   3.067  -1.648  -1.133  -1.080  H9   D9S  39  
D9S  H10  H10  H  0  1  N  N  N  -10.852  -2.434   3.992   0.438   0.947   1.137  H10  D9S  40  
D9S  H11  H11  H  0  1  N  N  N   -9.636  -2.322   5.310   0.720  -0.296  -0.105  H11  D9S  41  
D9S  H12  H12  H  0  1  N  N  N   -8.633  -0.965   9.887   4.581  -2.238  -0.725  H12  D9S  42  
D9S  H13  H13  H  0  1  N  N  N  -12.392  -1.026   5.237   1.248   1.530  -1.747  H13  D9S  43  
D9S  H14  H14  H  0  1  N  N  N  -12.429  -3.458   5.684  -0.051   3.325  -0.619  H14  D9S  44  
D9S  H15  H15  H  0  1  N  N  N  -11.341  -3.196   7.088   1.643   3.810  -0.868  H15  D9S  45  
D9S  H16  H16  H  0  1  N  N  N  -13.909  -1.191   8.929   3.176   3.815   0.994  H16  D9S  46  
D9S  H17  H17  H  0  1  N  N  N  -12.272  -1.911   9.098   2.608   3.333   2.610  H17  D9S  47  
D9S  H18  H18  H  0  1  N  N  N   -6.606   3.835  11.653   9.884  -1.540   0.784  H18  D9S  48  
D9S  H19  H19  H  0  1  N  N  N   -6.087   1.636  12.794   8.970  -3.785  -0.016  H19  D9S  49  
D9S  H20  H20  H  0  1  N  N  N  -10.318  -1.669   8.525   2.949  -0.271  -1.579  H20  D9S  50  
D9S  H21  H21  H  0  1  N  N  N   -9.239  -1.471   7.102   2.528  -0.698   0.097  H21  D9S  51  
D9S  H22  H22  H  0  1  N  N  N  -10.878   0.429   6.420   3.464   2.064  -0.802  H22  D9S  52  
D9S  H23  H23  H  0  1  N  N  N  -12.052   0.451   8.614   3.968   1.539   1.556  H23  D9S  53  
D9S  H24  H24  H  0  1  N  N  N  -13.137   0.301   7.191   2.287   1.012   1.813  H24  D9S  54  
D9S  H26  H26  H  0  1  N  N  N   -7.383   1.539   1.639  -3.615  -1.235   0.405  H26  D9S  55  
D9S  H27  H27  H  0  1  N  N  N   -7.322   2.205  -0.027  -5.249  -1.847   0.758  H27  D9S  56  
D9S  H28  H28  H  0  1  N  N  N   -7.256   3.313   1.385  -4.394  -2.387  -0.706  H28  D9S  57  
D9S  H29  H29  H  0  1  N  N  N   -9.238   3.549  -0.930  -6.831   0.024  -1.957  H29  D9S  58  
D9S  H30  H30  H  0  1  N  N  N   -9.318   4.618   0.511  -6.397  -1.701  -1.894  H30  D9S  59  
D9S  H31  H31  H  0  1  N  N  N  -11.284   1.958  -1.281  -7.007  -3.067   0.018  H31  D9S  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D9S  C4   C3   DOUB  Y  N   1  
D9S  C4   C5   SING  Y  N   2  
D9S  C3   C2   SING  Y  N   3  
D9S  C5   C6   DOUB  Y  N   4  
D9S  C2   C1   SING  N  N   5  
D9S  C2   C7   DOUB  Y  N   6  
D9S  C1   N    SING  N  N   7  
D9S  C6   C7   SING  Y  N   8  
D9S  N    C    SING  N  N   9  
D9S  N    C8   SING  N  N  10  
D9S  C8   C9   SING  N  N  11  
D9S  C9   C10  DOUB  Y  N  12  
D9S  C9   O    SING  Y  N  13  
D9S  C10  C11  SING  Y  N  14  
D9S  O    N1   SING  Y  N  15  
D9S  C11  N1   DOUB  Y  N  16  
D9S  C11  C12  SING  N  N  17  
D9S  C12  C13  SING  N  N  18  
D9S  C13  C14  SING  N  N  19  
D9S  C13  C17  SING  N  N  20  
D9S  C14  N2   SING  N  N  21  
D9S  C17  C18  SING  N  N  22  
D9S  C17  C16  SING  N  N  23  
D9S  N2   C15  SING  N  N  24  
D9S  C18  C19  SING  N  N  25  
D9S  C16  C15  SING  N  N  26  
D9S  O1   C19  DOUB  N  N  27  
D9S  C19  N3   SING  N  N  28  
D9S  N3   C20  SING  N  N  29  
D9S  S    C20  SING  Y  N  30  
D9S  S    C22  SING  Y  N  31  
D9S  C20  N4   DOUB  Y  N  32  
D9S  C22  C21  DOUB  Y  N  33  
D9S  N4   C21  SING  Y  N  34  
D9S  C4   H1   SING  N  N  35  
D9S  C5   H2   SING  N  N  36  
D9S  C6   H3   SING  N  N  37  
D9S  C7   H4   SING  N  N  38  
D9S  C8   H5   SING  N  N  39  
D9S  C8   H6   SING  N  N  40  
D9S  N2   H7   SING  N  N  41  
D9S  C10  H9   SING  N  N  42  
D9S  C12  H10  SING  N  N  43  
D9S  C12  H11  SING  N  N  44  
D9S  N3   H12  SING  N  N  45  
D9S  C13  H13  SING  N  N  46  
D9S  C14  H14  SING  N  N  47  
D9S  C14  H15  SING  N  N  48  
D9S  C15  H16  SING  N  N  49  
D9S  C15  H17  SING  N  N  50  
D9S  C22  H18  SING  N  N  51  
D9S  C21  H19  SING  N  N  52  
D9S  C18  H20  SING  N  N  53  
D9S  C18  H21  SING  N  N  54  
D9S  C17  H22  SING  N  N  55  
D9S  C16  H23  SING  N  N  56  
D9S  C16  H24  SING  N  N  57  
D9S  C    H26  SING  N  N  58  
D9S  C    H27  SING  N  N  59  
D9S  C    H28  SING  N  N  60  
D9S  C1   H29  SING  N  N  61  
D9S  C1   H30  SING  N  N  62  
D9S  C3   H31  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D9S  SMILES            ACDLabs               12.01  "c1cc(ccc1)CN(Cc2cc(no2)CC3CNCCC3CC(Nc4nccs4)=O)C"  
D9S  InChI             InChI                 1.03   "InChI=1S/C23H29N5O2S/c1-28(15-17-5-3-2-4-6-17)16-21-13-20(27-30-21)11-19-14-24-8-7-18(19)12-22(29)26-23-25-9-10-31-23/h2-6,9-10,13,18-19,24H,7-8,11-12,14-16H2,1H3,(H,25,26,29)/t18-,19-/m0/s1"  
D9S  InChIKey          InChI                 1.03   UCRRMFAAQQXDGH-OALUTQOASA-N  
D9S  SMILES_CANONICAL  CACTVS                3.385  "CN(Cc1onc(C[C@H]2CNCC[C@H]2CC(=O)Nc3sccn3)c1)Cc4ccccc4"  
D9S  SMILES            CACTVS                3.385  "CN(Cc1onc(C[CH]2CNCC[CH]2CC(=O)Nc3sccn3)c1)Cc4ccccc4"  
D9S  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CN(Cc1ccccc1)Cc2cc(no2)C[C@H]3CNCC[C@H]3CC(=O)Nc4nccs4"  
D9S  SMILES            "OpenEye OEToolkits"  2.0.6  "CN(Cc1ccccc1)Cc2cc(no2)CC3CNCCC3CC(=O)Nc4nccs4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D9S  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-{(3R,4S)-3-[(5-{[benzyl(methyl)amino]methyl}-1,2-oxazol-3-yl)methyl]piperidin-4-yl}-N-(1,3-thiazol-2-yl)acetamide"  
D9S  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[(3~{R},4~{S})-3-[[5-[[methyl-(phenylmethyl)amino]methyl]-1,2-oxazol-3-yl]methyl]piperidin-4-yl]-~{N}-(1,3-thiazol-2-yl)ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D9S  "Create component"  2017-10-23  RCSB  
D9S  "Initial release"   2020-04-22  RCSB  
##
