data_A5S
# 
_chem_comp.id                                    A5S 
_chem_comp.name                                  "~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] 3-oxidanylidenebutanethioate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H27 N2 O9 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        442.422 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A5S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PRV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A5S C1  C1  C 0 1 N N N N N N 126.206 163.477 166.192 -8.270  0.442  -0.177 C1  A5S 1  
A5S C2  C2  C 0 1 N N N N N N 127.512 163.562 166.955 -9.727  0.351  -0.552 C2  A5S 2  
A5S C3  C3  C 0 1 N N N N N N 127.745 164.995 167.380 -10.486 1.473  0.108  C3  A5S 3  
A5S C4  C4  C 0 1 N N N N N N 128.526 165.934 166.488 -11.972 1.607  -0.107 C4  A5S 4  
A5S O1  O1  O 0 1 N N N N N N 127.282 165.360 168.447 -9.904  2.265  0.810  O1  A5S 5  
A5S O5  O2  O 0 1 N N N N N N 125.551 164.495 165.990 -7.886  1.331  0.554  O5  A5S 6  
A5S O40 O3  O 0 1 N N N N N N 124.513 162.748 160.638 -2.042  -2.146 -0.732 O40 A5S 7  
A5S C39 C5  C 0 1 N N N N N N 123.508 163.056 161.259 -2.067  -1.161 -0.024 C39 A5S 8  
A5S N41 N1  N 0 1 N N N N N N 123.437 163.177 162.578 -3.231  -0.518 0.194  N41 A5S 9  
A5S C42 C6  C 0 1 N N N N N N 124.577 162.882 163.427 -4.466  -1.009 -0.422 C42 A5S 10 
A5S C43 C7  C 0 1 N N N N N N 124.194 162.090 164.684 -5.633  -0.107 -0.016 C43 A5S 11 
A5S S44 S1  S 0 1 N N N N N N 125.652 161.979 165.646 -7.158  -0.713 -0.778 S44 A5S 12 
A5S C38 C8  C 0 1 N N N N N N 122.221 163.226 160.513 -0.797  -0.656 0.610  C38 A5S 13 
A5S C37 C9  C 0 1 N N N N N N 121.663 161.803 160.366 0.370   -1.559 0.204  C37 A5S 14 
A5S N36 N2  N 0 1 N N N N N N 122.220 161.115 159.204 1.605   -1.068 0.820  N36 A5S 15 
A5S C34 C10 C 0 1 N N N N N N 121.599 161.070 158.022 2.769   -1.711 0.601  C34 A5S 16 
A5S O35 O4  O 0 1 N N N N N N 120.486 161.544 157.815 2.781   -2.747 -0.029 O35 A5S 17 
A5S C32 C11 C 0 1 N N R N N N 122.318 160.447 156.858 4.057   -1.142 1.140  C32 A5S 18 
A5S O33 O5  O 0 1 N N N N N N 123.081 159.293 157.311 3.764   -0.091 2.062  O33 A5S 19 
A5S C29 C12 C 0 1 N N N N N N 123.139 161.514 156.047 4.893   -0.589 -0.016 C29 A5S 20 
A5S C31 C13 C 0 1 N N N N N N 122.377 162.831 155.797 5.331   -1.740 -0.924 C31 A5S 21 
A5S C30 C14 C 0 1 N N N N N N 124.465 161.819 156.745 4.054   0.405  -0.822 C30 A5S 22 
A5S C28 C15 C 0 1 N N N N N N 123.359 160.954 154.639 6.128   0.119  0.541  C28 A5S 23 
A5S O27 O6  O 0 1 N N N N N N 123.709 159.553 154.576 6.909   0.636  -0.538 O27 A5S 24 
A5S P24 P1  P 0 1 N N N N N N 123.877 158.907 153.107 8.284   1.444  -0.318 P24 A5S 25 
A5S O23 O7  O 0 1 N N N N N N 122.668 157.970 152.710 8.821   1.986  -1.736 O23 A5S 26 
A5S O25 O8  O 0 1 N N N N N N 123.765 160.004 152.042 8.044   2.589  0.589  O25 A5S 27 
A5S O26 O9  O 0 1 N N N N N N 125.178 158.141 153.074 9.384   0.465  0.334  O26 A5S 28 
A5S H1  H1  H 0 1 N N N N N N 127.461 162.918 167.845 -9.830  0.430  -1.634 H1  A5S 29 
A5S H2  H2  H 0 1 N N N N N N 128.338 163.230 166.309 -10.129 -0.605 -0.218 H2  A5S 30 
A5S H3  H3  H 0 1 N N N N N N 128.584 166.926 166.960 -12.502 1.042  0.658  H3  A5S 31 
A5S H4  H4  H 0 1 N N N N N N 129.542 165.539 166.340 -12.254 2.658  -0.045 H4  A5S 32 
A5S H5  H5  H 0 1 N N N N N N 128.021 166.020 165.515 -12.232 1.219  -1.092 H5  A5S 33 
A5S H6  H6  H 0 1 N N N N N N 122.580 163.478 162.996 -3.251  0.269  0.760  H6  A5S 34 
A5S H7  H7  H 0 1 N N N N N N 125.303 162.292 162.848 -4.359  -0.999 -1.507 H7  A5S 35 
A5S H8  H8  H 0 1 N N N N N N 125.039 163.831 163.737 -4.660  -2.028 -0.086 H8  A5S 36 
A5S H9  H9  H 0 1 N N N N N N 123.406 162.617 165.243 -5.739  -0.117 1.069  H9  A5S 37 
A5S H10 H10 H 0 1 N N N N N N 123.839 161.085 164.410 -5.438  0.912  -0.352 H10 A5S 38 
A5S H11 H11 H 0 1 N N N N N N 122.402 163.675 159.525 -0.602  0.362  0.274  H11 A5S 39 
A5S H12 H12 H 0 1 N N N N N N 121.524 163.859 161.082 -0.903  -0.667 1.695  H12 A5S 40 
A5S H13 H13 H 0 1 N N N N N N 120.570 161.860 160.255 0.176   -2.578 0.540  H13 A5S 41 
A5S H14 H14 H 0 1 N N N N N N 121.911 161.229 161.271 0.477   -1.549 -0.881 H14 A5S 42 
A5S H15 H15 H 0 1 N N N N N N 123.104 160.658 159.297 1.585   -0.281 1.386  H15 A5S 43 
A5S H16 H16 H 0 1 N N N N N N 121.543 160.076 156.171 4.616   -1.927 1.649  H16 A5S 44 
A5S H17 H17 H 0 1 N N N N N N 122.510 158.703 157.789 3.267   0.644  1.676  H17 A5S 45 
A5S H18 H18 H 0 1 N N N N N N 122.166 163.321 156.759 5.990   -1.357 -1.703 H18 A5S 46 
A5S H19 H19 H 0 1 N N N N N N 122.991 163.497 155.173 5.862   -2.487 -0.334 H19 A5S 47 
A5S H20 H20 H 0 1 N N N N N N 121.430 162.614 155.280 4.454   -2.196 -1.383 H20 A5S 48 
A5S H21 H21 H 0 1 N N N N N N 124.267 162.218 157.751 3.742   1.225  -0.175 H21 A5S 49 
A5S H22 H22 H 0 1 N N N N N N 125.057 160.895 156.827 4.650   0.799  -1.645 H22 A5S 50 
A5S H23 H23 H 0 1 N N N N N N 125.025 162.563 156.159 3.174   -0.100 -1.219 H23 A5S 51 
A5S H24 H24 H 0 1 N N N N N N 124.171 161.528 154.169 5.816   0.939  1.189  H24 A5S 52 
A5S H25 H25 H 0 1 N N N N N N 122.430 161.098 154.068 6.726   -0.589 1.115  H25 A5S 53 
A5S H26 H26 H 0 1 N N N N N N 122.223 158.330 151.952 9.649   2.483  -1.679 H26 A5S 54 
A5S H27 H27 H 0 1 N N N N N N 125.727 158.478 152.376 9.591   -0.309 -0.207 H27 A5S 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A5S O25 P24 DOUB N N 1  
A5S O23 P24 SING N N 2  
A5S O26 P24 SING N N 3  
A5S P24 O27 SING N N 4  
A5S O27 C28 SING N N 5  
A5S C28 C29 SING N N 6  
A5S C31 C29 SING N N 7  
A5S C29 C30 SING N N 8  
A5S C29 C32 SING N N 9  
A5S C32 O33 SING N N 10 
A5S C32 C34 SING N N 11 
A5S O35 C34 DOUB N N 12 
A5S C34 N36 SING N N 13 
A5S N36 C37 SING N N 14 
A5S C37 C38 SING N N 15 
A5S C38 C39 SING N N 16 
A5S O40 C39 DOUB N N 17 
A5S C39 N41 SING N N 18 
A5S N41 C42 SING N N 19 
A5S C42 C43 SING N N 20 
A5S C43 S44 SING N N 21 
A5S S44 C1  SING N N 22 
A5S O5  C1  DOUB N N 23 
A5S C1  C2  SING N N 24 
A5S C4  C3  SING N N 25 
A5S C2  C3  SING N N 26 
A5S C3  O1  DOUB N N 27 
A5S C2  H1  SING N N 28 
A5S C2  H2  SING N N 29 
A5S C4  H3  SING N N 30 
A5S C4  H4  SING N N 31 
A5S C4  H5  SING N N 32 
A5S N41 H6  SING N N 33 
A5S C42 H7  SING N N 34 
A5S C42 H8  SING N N 35 
A5S C43 H9  SING N N 36 
A5S C43 H10 SING N N 37 
A5S C38 H11 SING N N 38 
A5S C38 H12 SING N N 39 
A5S C37 H13 SING N N 40 
A5S C37 H14 SING N N 41 
A5S N36 H15 SING N N 42 
A5S C32 H16 SING N N 43 
A5S O33 H17 SING N N 44 
A5S C31 H18 SING N N 45 
A5S C31 H19 SING N N 46 
A5S C31 H20 SING N N 47 
A5S C30 H21 SING N N 48 
A5S C30 H22 SING N N 49 
A5S C30 H23 SING N N 50 
A5S C28 H24 SING N N 51 
A5S C28 H25 SING N N 52 
A5S O23 H26 SING N N 53 
A5S O26 H27 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A5S InChI            InChI                1.06  "InChI=1S/C15H27N2O9PS/c1-10(18)8-12(20)28-7-6-16-11(19)4-5-17-14(22)13(21)15(2,3)9-26-27(23,24)25/h13,21H,4-9H2,1-3H3,(H,16,19)(H,17,22)(H2,23,24,25)/t13-/m0/s1" 
A5S InChIKey         InChI                1.06  YNABGOTVLHSZGL-ZDUSSCGKSA-N                                                                                                                                        
A5S SMILES_CANONICAL CACTVS               3.385 "CC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"                                                                                                        
A5S SMILES           CACTVS               3.385 "CC(=O)CC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"                                                                                                         
A5S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O"                                                                                                         
A5S SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O"                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           A5S 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] 3-oxidanylidenebutanethioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A5S "Create component" 2023-07-17 PDBE 
A5S "Initial release"  2023-11-22 RCSB 
A5S "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A5S 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               O23 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   CB 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
