data_9VS
#

_chem_comp.id                                   9VS
_chem_comp.name                                 "cis-4-[(2-[(4-{[4-(1,3-dioxolan-2-yl)pyridin-2-yl]ethynyl}phenyl)amino]-5-{4-[(4-methylpiperazin-1-yl)methyl]phenyl}pyrimidin-4-yl)amino]cyclohexan-1-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C38 H43 N7 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-15
_chem_comp.pdbx_modified_date                   2019-09-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       645.793
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9VS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W2N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9VS  O01   O1   O  0  1  N  N  N  -11.178  39.748  -16.245    7.477  -4.024   1.891  O01   9VS   1  
9VS  C02   C1   C  0  1  N  N  N  -12.087  40.776  -15.909    6.325  -4.585   1.258  C02   9VS   2  
9VS  C03   C2   C  0  1  N  N  N  -12.046  41.145  -14.406    6.362  -4.270  -0.239  C03   9VS   3  
9VS  C04   C3   C  0  1  N  N  N  -12.971  42.260  -13.990    5.129  -4.870  -0.917  C04   9VS   4  
9VS  C05   C4   C  0  1  N  N  N  -13.556  40.408  -16.183    5.061  -3.984   1.875  C05   9VS   5  
9VS  C06   C5   C  0  1  N  N  N  -14.511  41.577  -15.997    3.828  -4.585   1.196  C06   9VS   6  
9VS  C07   C6   C  0  1  N  N  N  -14.157  42.605  -14.890    3.864  -4.269  -0.300  C07   9VS   7  
9VS  N08   N1   N  0  1  N  N  N  -15.407  43.081  -14.172    3.869  -2.817  -0.493  N08   9VS   8  
9VS  C09   C7   C  0  1  Y  N  N  -16.018  44.384  -14.262    2.676  -2.118  -0.511  C09   9VS   9  
9VS  C10   C8   C  0  1  Y  N  N  -17.209  44.859  -13.511    2.667  -0.723  -0.695  C10   9VS  10  
9VS  C11   C9   C  0  1  Y  N  N  -18.171  44.104  -12.514    3.932   0.029  -0.876  C11   9VS  11  
9VS  C12   C10  C  0  1  Y  N  N  -17.900  43.457  -11.271    4.069   0.923  -1.937  C12   9VS  12  
9VS  C13   C11  C  0  1  Y  N  N  -18.895  42.832  -10.476    5.249   1.620  -2.101  C13   9VS  13  
9VS  C14   C12  C  0  1  Y  N  N  -20.242  42.822  -10.845    6.294   1.433  -1.214  C14   9VS  14  
9VS  C15   C13  C  0  1  N  N  N  -21.374  42.192  -10.072    7.580   2.198  -1.397  C15   9VS  15  
9VS  N16   N2   N  0  1  N  N  N  -22.403  41.795  -11.015    7.504   3.467  -0.661  N16   9VS  16  
9VS  C17   C14  C  0  1  N  N  N  -23.535  42.707  -10.783    8.633   4.342  -1.003  C17   9VS  17  
9VS  C18   C15  C  0  1  N  N  N  -24.792  42.202  -11.439    8.476   5.681  -0.278  C18   9VS  18  
9VS  N19   N3   N  0  1  N  N  N  -24.634  41.202  -12.519    8.416   5.446   1.171  N19   9VS  19  
9VS  C20   C16  C  0  1  N  N  N  -25.941  40.774  -12.905    9.683   4.890   1.667  C20   9VS  20  
9VS  C21   C17  C  0  1  N  N  N  -23.850  40.103  -11.985    7.287   4.570   1.514  C21   9VS  21  
9VS  C22   C18  C  0  1  N  N  N  -22.874  40.434  -10.881    7.445   3.231   0.789  C22   9VS  22  
9VS  C23   C19  C  0  1  Y  N  N  -20.557  43.462  -12.051    6.163   0.548  -0.159  C23   9VS  23  
9VS  C24   C20  C  0  1  Y  N  N  -19.560  44.075  -12.828    4.986  -0.150   0.018  C24   9VS  24  
9VS  C25   C21  C  0  1  Y  N  N  -17.556  46.211  -13.837    1.437  -0.067  -0.704  C25   9VS  25  
9VS  N26   N4   N  0  1  Y  N  N  -16.926  47.077  -14.700    0.330  -0.771  -0.540  N26   9VS  26  
9VS  C27   C22  C  0  1  Y  N  N  -15.810  46.551  -15.346    0.375  -2.085  -0.369  C27   9VS  27  
9VS  N28   N5   N  0  1  N  N  N  -15.056  47.377  -16.253   -0.810  -2.781  -0.201  N28   9VS  28  
9VS  C29   C23  C  0  1  Y  N  N  -13.760  46.747  -17.708   -2.018  -2.089  -0.099  C29   9VS  29  
9VS  C30   C24  C  0  1  Y  N  N  -13.153  45.530  -17.642   -3.183  -2.647  -0.617  C30   9VS  30  
9VS  C31   C25  C  0  1  Y  N  N  -12.265  45.233  -18.706   -4.376  -1.967  -0.519  C31   9VS  31  
9VS  C32   C26  C  0  1  Y  N  N  -11.972  46.079  -19.790   -4.416  -0.715   0.103  C32   9VS  32  
9VS  C33   C27  C  0  1  N  N  N  -11.021  45.836  -20.999   -5.656  -0.005   0.208  C33   9VS  33  
9VS  C34   C28  C  0  1  N  N  N  -10.283  45.821  -21.983   -6.672   0.577   0.294  C34   9VS  34  
9VS  C35   C29  C  0  1  Y  N  N   -9.190  45.985  -22.999   -7.911   1.288   0.398  C35   9VS  35  
9VS  N36   N6   N  0  1  Y  N  N   -9.290  45.514  -24.271   -7.942   2.478   0.991  N36   9VS  36  
9VS  C37   C30  C  0  1  Y  N  N   -8.286  45.687  -25.115   -9.061   3.161   1.107  C37   9VS  37  
9VS  C38   C31  C  0  1  Y  N  N   -7.046  46.306  -24.966  -10.253   2.663   0.614  C38   9VS  38  
9VS  C39   C32  C  0  1  Y  N  N   -6.978  46.774  -23.667  -10.267   1.423  -0.013  C39   9VS  39  
9VS  C40   C33  C  0  1  N  N  N   -5.765  47.522  -23.127  -11.550   0.853  -0.562  C40   9VS  40  
9VS  O41   O2   O  0  1  N  N  N   -4.854  47.838  -24.218  -12.637   1.763  -0.325  O41   9VS  41  
9VS  C42   C34  C  0  1  N  N  N   -3.695  47.714  -23.504  -13.803   0.967  -0.050  C42   9VS  42  
9VS  C43   C35  C  0  1  N  N  N   -4.040  46.624  -22.476  -13.311  -0.497  -0.098  C43   9VS  43  
9VS  O44   O3   O  0  1  N  N  N   -5.227  47.056  -21.894  -11.888  -0.367   0.133  O44   9VS  44  
9VS  C45   C36  C  0  1  Y  N  N   -7.995  46.644  -22.692   -9.078   0.728  -0.128  C45   9VS  45  
9VS  C46   C37  C  0  1  Y  N  N  -12.664  47.326  -19.718   -3.243  -0.158   0.623  C46   9VS  46  
9VS  C47   C38  C  0  1  Y  N  N  -13.552  47.704  -18.721   -2.055  -0.847   0.525  C47   9VS  47  
9VS  N48   N7   N  0  1  Y  N  N  -15.357  45.255  -15.130    1.519  -2.752  -0.358  N48   9VS  48  
9VS  H011  H1   H  0  0  N  N  N  -11.242  39.559  -17.174    7.519  -4.185   2.844  H011  9VS  49  
9VS  H021  H2   H  0  0  N  N  N  -11.851  41.682  -16.486    6.322  -5.665   1.401  H021  9VS  50  
9VS  H031  H3   H  0  0  N  N  N  -12.314  40.248  -13.829    6.366  -3.189  -0.383  H031  9VS  51  
9VS  H032  H4   H  0  0  N  N  N  -11.018  41.447  -14.158    7.263  -4.698  -0.678  H032  9VS  52  
9VS  H042  H5   H  0  0  N  N  N  -13.380  41.991  -13.005    5.155  -4.646  -1.983  H042  9VS  53  
9VS  H041  H6   H  0  0  N  N  N  -12.360  43.170  -13.897    5.125  -5.951  -0.773  H041  9VS  54  
9VS  H052  H7   H  0  0  N  N  N  -13.639  40.050  -17.220    5.034  -4.209   2.941  H052  9VS  55  
9VS  H051  H8   H  0  0  N  N  N  -13.850  39.603  -15.493    5.064  -2.904   1.731  H051  9VS  56  
9VS  H061  H9   H  0  0  N  N  N  -14.560  42.121  -16.952    3.824  -5.665   1.340  H061  9VS  57  
9VS  H062  H10  H  0  0  N  N  N  -15.502  41.162  -15.760    2.927  -4.157   1.636  H062  9VS  58  
9VS  H071  H11  H  0  0  N  N  N  -13.817  43.488  -15.451    2.986  -4.697  -0.784  H071  9VS  59  
9VS  H081  H12  H  0  0  N  N  N  -16.123  42.441  -14.451    4.709  -2.346  -0.609  H081  9VS  60  
9VS  H121  H13  H  0  0  N  N  N  -16.880  43.442  -10.916    3.254   1.069  -2.630  H121  9VS  61  
9VS  H131  H14  H  0  0  N  N  N  -18.601  42.348   -9.556    5.356   2.312  -2.922  H131  9VS  62  
9VS  H151  H15  H  0  0  N  N  N  -21.007  41.309   -9.528    8.412   1.606  -1.017  H151  9VS  63  
9VS  H152  H16  H  0  0  N  N  N  -21.786  42.919   -9.356    7.733   2.401  -2.457  H152  9VS  64  
9VS  H171  H18  H  0  0  N  N  N  -23.707  42.795   -9.700    9.566   3.870  -0.696  H171  9VS  65  
9VS  H172  H19  H  0  0  N  N  N  -23.288  43.696  -11.197    8.649   4.512  -2.080  H172  9VS  66  
9VS  H182  H20  H  0  0  N  N  N  -25.415  41.747  -10.655    9.327   6.321  -0.508  H182  9VS  67  
9VS  H181  H21  H  0  0  N  N  N  -25.315  43.071  -11.866    7.556   6.166  -0.606  H181  9VS  68  
9VS  H201  H23  H  0  0  N  N  N  -25.860  40.028  -13.709   10.492   5.590   1.459  H201  9VS  69  
9VS  H203  H24  H  0  0  N  N  N  -26.451  40.326  -12.039    9.611   4.726   2.742  H203  9VS  70  
9VS  H202  H25  H  0  0  N  N  N  -26.519  41.639  -13.264    9.884   3.943   1.167  H202  9VS  71  
9VS  H212  H26  H  0  0  N  N  N  -24.553  39.353  -11.594    7.272   4.401   2.591  H212  9VS  72  
9VS  H211  H27  H  0  0  N  N  N  -23.276  39.669  -12.817    6.354   5.042   1.207  H211  9VS  73  
9VS  H221  H28  H  0  0  N  N  N  -22.017  39.747  -10.937    6.593   2.591   1.019  H221  9VS  74  
9VS  H222  H29  H  0  0  N  N  N  -23.374  40.318   -9.908    8.364   2.746   1.116  H222  9VS  75  
9VS  H231  H30  H  0  0  N  N  N  -21.583  43.484  -12.389    6.983   0.406   0.530  H231  9VS  76  
9VS  H241  H31  H  0  0  N  N  N  -19.872  44.565  -13.738    4.884  -0.838   0.844  H241  9VS  77  
9VS  H251  H32  H  0  0  N  N  N  -18.430  46.602  -13.338    1.389   1.003  -0.843  H251  9VS  78  
9VS  H3    H33  H  0  1  N  N  N  -15.179  48.365  -16.163   -0.801  -3.750  -0.155  H3    9VS  79  
9VS  H301  H36  H  0  0  N  N  N  -13.336  44.838  -16.833   -3.151  -3.614  -1.097  H301  9VS  80  
9VS  H311  H37  H  0  0  N  N  N  -11.770  44.273  -18.682   -5.280  -2.400  -0.922  H311  9VS  81  
9VS  H371  H38  H  0  0  N  N  N   -8.458  45.274  -26.098   -9.049   4.125   1.594  H371  9VS  82  
9VS  H381  H39  H  0  0  N  N  N   -6.282  46.402  -25.723  -11.165   3.232   0.715  H381  9VS  83  
9VS  H401  H40  H  0  0  N  N  N   -6.188  48.503  -22.865  -11.447   0.660  -1.630  H401  9VS  84  
9VS  H422  H41  H  0  0  N  N  N   -2.863  47.399  -24.151  -14.197   1.201   0.939  H422  9VS  85  
9VS  H421  H42  H  0  0  N  N  N   -3.434  48.659  -23.006  -14.565   1.135  -0.811  H421  9VS  86  
9VS  H432  H43  H  0  0  N  N  N   -4.182  45.653  -22.972  -13.778  -1.087   0.690  H432  9VS  87  
9VS  H431  H44  H  0  0  N  N  N   -3.246  46.537  -21.720  -13.505  -0.936  -1.077  H431  9VS  88  
9VS  H451  H45  H  0  0  N  N  N   -7.848  47.056  -21.705   -9.052  -0.237  -0.613  H451  9VS  89  
9VS  H461  H46  H  0  0  N  N  N  -12.480  48.038  -20.509   -3.270   0.808   1.104  H461  9VS  90  
9VS  H471  H47  H  0  0  N  N  N  -14.048  48.663  -18.721   -1.149  -0.420   0.930  H471  9VS  91  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9VS  O01  C02   SING  N  N   1  
9VS  C02  C03   SING  N  N   2  
9VS  C02  C05   SING  N  N   3  
9VS  C03  C04   SING  N  N   4  
9VS  C04  C07   SING  N  N   5  
9VS  C05  C06   SING  N  N   6  
9VS  C06  C07   SING  N  N   7  
9VS  C07  N08   SING  N  N   8  
9VS  N08  C09   SING  N  N   9  
9VS  C09  C10   DOUB  Y  N  10  
9VS  C09  N48   SING  Y  N  11  
9VS  C10  C11   SING  N  N  12  
9VS  C10  C25   SING  Y  N  13  
9VS  C11  C12   DOUB  Y  N  14  
9VS  C11  C24   SING  Y  N  15  
9VS  C12  C13   SING  Y  N  16  
9VS  C13  C14   DOUB  Y  N  17  
9VS  C14  C15   SING  N  N  18  
9VS  C14  C23   SING  Y  N  19  
9VS  C15  N16   SING  N  N  20  
9VS  N16  C17   SING  N  N  21  
9VS  N16  C22   SING  N  N  22  
9VS  C17  C18   SING  N  N  23  
9VS  C18  N19   SING  N  N  24  
9VS  N19  C20   SING  N  N  25  
9VS  N19  C21   SING  N  N  26  
9VS  C21  C22   SING  N  N  27  
9VS  C23  C24   DOUB  Y  N  28  
9VS  C25  N26   DOUB  Y  N  29  
9VS  N26  C27   SING  Y  N  30  
9VS  C27  N28   SING  N  N  31  
9VS  C27  N48   DOUB  Y  N  32  
9VS  C29  C30   DOUB  Y  N  33  
9VS  C29  C47   SING  Y  N  34  
9VS  C30  C31   SING  Y  N  35  
9VS  C31  C32   DOUB  Y  N  36  
9VS  C32  C33   SING  N  N  37  
9VS  C32  C46   SING  Y  N  38  
9VS  C33  C34   TRIP  N  N  39  
9VS  C34  C35   SING  N  N  40  
9VS  C35  N36   DOUB  Y  N  41  
9VS  C35  C45   SING  Y  N  42  
9VS  N36  C37   SING  Y  N  43  
9VS  C37  C38   DOUB  Y  N  44  
9VS  C38  C39   SING  Y  N  45  
9VS  C39  C40   SING  N  N  46  
9VS  C39  C45   DOUB  Y  N  47  
9VS  C40  O41   SING  N  N  48  
9VS  C40  O44   SING  N  N  49  
9VS  O41  C42   SING  N  N  50  
9VS  C42  C43   SING  N  N  51  
9VS  C43  O44   SING  N  N  52  
9VS  C46  C47   DOUB  Y  N  53  
9VS  O01  H011  SING  N  N  54  
9VS  C02  H021  SING  N  N  55  
9VS  C03  H031  SING  N  N  56  
9VS  C03  H032  SING  N  N  57  
9VS  C04  H042  SING  N  N  58  
9VS  C04  H041  SING  N  N  59  
9VS  C05  H052  SING  N  N  60  
9VS  C05  H051  SING  N  N  61  
9VS  C06  H061  SING  N  N  62  
9VS  C06  H062  SING  N  N  63  
9VS  C07  H071  SING  N  N  64  
9VS  N08  H081  SING  N  N  65  
9VS  C12  H121  SING  N  N  66  
9VS  C13  H131  SING  N  N  67  
9VS  C15  H151  SING  N  N  68  
9VS  C15  H152  SING  N  N  69  
9VS  C17  H171  SING  N  N  70  
9VS  C17  H172  SING  N  N  71  
9VS  C18  H182  SING  N  N  72  
9VS  C18  H181  SING  N  N  73  
9VS  C20  H201  SING  N  N  74  
9VS  C20  H203  SING  N  N  75  
9VS  C20  H202  SING  N  N  76  
9VS  C21  H212  SING  N  N  77  
9VS  C21  H211  SING  N  N  78  
9VS  C22  H221  SING  N  N  79  
9VS  C22  H222  SING  N  N  80  
9VS  C23  H231  SING  N  N  81  
9VS  C24  H241  SING  N  N  82  
9VS  C25  H251  SING  N  N  83  
9VS  N28  H3    SING  N  N  84  
9VS  C30  H301  SING  N  N  85  
9VS  C31  H311  SING  N  N  86  
9VS  C37  H371  SING  N  N  87  
9VS  C38  H381  SING  N  N  88  
9VS  C40  H401  SING  N  N  89  
9VS  C42  H422  SING  N  N  90  
9VS  C42  H421  SING  N  N  91  
9VS  C43  H432  SING  N  N  92  
9VS  C43  H431  SING  N  N  93  
9VS  C45  H451  SING  N  N  94  
9VS  C46  H461  SING  N  N  95  
9VS  C47  H471  SING  N  N  96  
9VS  N28  C29   SING  N  N  97  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9VS  SMILES            ACDLabs               12.01  "OC1CCC(CC1)Nc7c(c3ccc(CN2CCN(C)CC2)cc3)cnc(Nc6ccc(C#Cc5nccc(C4OCCO4)c5)cc6)n7"  
9VS  InChI             InChI                 1.03   "InChI=1S/C38H43N7O3/c1-44-18-20-45(21-19-44)26-28-2-7-29(8-3-28)35-25-40-38(43-36(35)41-31-12-14-34(46)15-13-31)42-32-9-4-27(5-10-32)6-11-33-24-30(16-17-39-33)37-47-22-23-48-37/h2-5,7-10,16-17,24-25,31,34,37,46H,12-15,18-23,26H2,1H3,(H2,40,41,42,43)/t31-,34+"  
9VS  InChIKey          InChI                 1.03   NUKXTUWDAYJQEV-GXJRYFAHSA-N  
9VS  SMILES_CANONICAL  CACTVS                3.385  "CN1CCN(CC1)Cc2ccc(cc2)c3cnc(Nc4ccc(cc4)C#Cc5cc(ccn5)C6OCCO6)nc3N[C@H]7CC[C@@H](O)CC7"  
9VS  SMILES            CACTVS                3.385  "CN1CCN(CC1)Cc2ccc(cc2)c3cnc(Nc4ccc(cc4)C#Cc5cc(ccn5)C6OCCO6)nc3N[CH]7CC[CH](O)CC7"  
9VS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CN1CCN(CC1)Cc2ccc(cc2)c3cnc(nc3NC4CCC(CC4)O)Nc5ccc(cc5)C#Cc6cc(ccn6)C7OCCO7"  
9VS  SMILES            "OpenEye OEToolkits"  2.0.6  "CN1CCN(CC1)Cc2ccc(cc2)c3cnc(nc3NC4CCC(CC4)O)Nc5ccc(cc5)C#Cc6cc(ccn6)C7OCCO7"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9VS  "SYSTEMATIC NAME"  ACDLabs               12.01  "cis-4-[(2-[(4-{[4-(1,3-dioxolan-2-yl)pyridin-2-yl]ethynyl}phenyl)amino]-5-{4-[(4-methylpiperazin-1-yl)methyl]phenyl}pyrimidin-4-yl)amino]cyclohexan-1-ol"  
9VS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "4-[[2-[[4-[2-[4-(1,3-dioxolan-2-yl)pyridin-2-yl]ethynyl]phenyl]amino]-5-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]pyrimidin-4-yl]amino]cyclohexan-1-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9VS  "Create component"  2017-06-15  RCSB  
9VS  "Initial release"   2019-09-11  RCSB  
##
