data_5KS
# 
_chem_comp.id                                    5KS 
_chem_comp.name                                  "3-deoxy-3-[4-(4-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(4-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside" 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C28 H30 F2 N6 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-14 
_chem_comp.pdbx_modified_date                    2016-08-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        648.635 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5KS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5E8A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5KS C6    C1  C 0 1 N N N 20.653 -5.617  -0.055 -2.698  3.893  2.356  C6    5KS 1  
5KS C5    C2  C 0 1 N N R 20.060 -6.778  -0.834 -2.642  3.145  1.023  C5    5KS 2  
5KS S1    S1  S 0 1 N N N 21.178 -10.506 -0.581 0.001   0.333  -0.002 S1    5KS 3  
5KS C2    C3  C 0 1 N N R 18.770 -9.347  -1.027 -2.681  0.655  -0.436 C2    5KS 4  
5KS N3    N1  N 0 1 Y N N 14.440 -8.108  -1.748 -7.045  0.306  -1.356 N3    5KS 5  
5KS C4    C4  C 0 1 N N R 18.561 -6.907  -0.623 -3.963  2.405  0.797  C4    5KS 6  
5KS "C5'" C5  C 0 1 N N R 24.686 -10.453 -2.386 2.643   3.149  -1.018 "C5'" 5KS 7  
5KS "C4'" C6  C 0 1 N N R 25.645 -10.672 -1.217 3.964   2.409  -0.794 "C4'" 5KS 8  
5KS "N3'" N2  N 0 1 Y N N 26.974 -11.125 2.831  7.049   0.308  1.348  "N3'" 5KS 9  
5KS "C2'" C7  C 0 1 N N R 23.714 -10.213 0.298  2.683   0.655  0.433  "C2'" 5KS 10 
5KS "N1'" N3  N 0 1 Y N N 26.076 -9.988  1.149  5.110   0.839  0.695  "N1'" 5KS 11 
5KS "C6'" C8  C 0 1 N N N 25.095 -11.243 -3.630 2.698   3.901  -2.349 "C6'" 5KS 12 
5KS O6    O1  O 0 1 N N N 22.040 -5.478  -0.306 -1.513  4.676  2.513  O6    5KS 13 
5KS O5    O2  O 0 1 N N N 20.701 -7.995  -0.393 -1.568  2.202  1.051  O5    5KS 14 
5KS O4    O3  O 0 1 N N N 18.237 -7.077  0.773  -4.202  1.510  1.885  O4    5KS 15 
5KS C3    C9  C 0 1 N N S 18.037 -8.093  -1.433 -3.877  1.610  -0.510 C3    5KS 16 
5KS N1    N4  N 0 1 Y N N 16.589 -8.208  -1.216 -5.109  0.839  -0.697 N1    5KS 17 
5KS N2    N5  N 0 1 Y N N 15.728 -7.942  -2.286 -6.127  1.206  -1.392 N2    5KS 18 
5KS CB    C10 C 0 1 Y N N 14.615 -8.454  -0.461 -6.617  -0.718 -0.596 CB    5KS 19 
5KS CA    C11 C 0 1 Y N N 15.937 -8.500  -0.114 -5.367  -0.378 -0.168 CA    5KS 20 
5KS CD    C12 C 0 1 Y N N 13.385 -8.651  0.344  -7.358  -1.967 -0.285 CD    5KS 21 
5KS CI    C13 C 0 1 Y N N 13.503 -8.515  1.711  -8.636  -2.168 -0.801 CI    5KS 22 
5KS CH    C14 C 0 1 Y N N 12.387 -8.680  2.516  -9.320  -3.330 -0.509 CH    5KS 23 
5KS F     F1  F 0 1 N N N 10.063 -9.070  2.762  -9.412  -5.432 0.579  F     5KS 24 
5KS CG    C15 C 0 1 Y N N 11.152 -8.934  1.949  -8.739  -4.296 0.296  CG    5KS 25 
5KS CF    C16 C 0 1 Y N N 11.023 -9.041  0.569  -7.468  -4.100 0.811  CF    5KS 26 
5KS CE    C17 C 0 1 Y N N 12.143 -8.888  -0.245 -6.774  -2.943 0.519  CE    5KS 27 
5KS O2    O4  O 0 1 N N N 18.381 -10.431 -1.880 -2.548  -0.041 -1.677 O2    5KS 28 
5KS C1    C18 C 0 1 N N S 20.265 -9.115  -1.171 -1.410  1.462  -0.162 C1    5KS 29 
5KS "C1'" C19 C 0 1 N N S 22.833 -10.014 -0.924 1.411   1.462  0.162  "C1'" 5KS 30 
5KS "O5'" O5  O 0 1 N N N 23.361 -10.823 -2.005 1.569   2.206  -1.049 "O5'" 5KS 31 
5KS "O6'" O6  O 0 1 N N N 24.313 -10.788 -4.748 1.513   4.683  -2.504 "O6'" 5KS 32 
5KS "O2'" O7  O 0 1 N N N 23.171 -9.455  1.392  2.550   -0.044 1.672  "O2'" 5KS 33 
5KS "C3'" C20 C 0 1 N N S 25.168 -9.835  -0.030 3.878   1.610  0.510  "C3'" 5KS 34 
5KS "O4'" O8  O 0 1 N N N 25.715 -12.073 -0.886 4.203   1.518  -1.885 "O4'" 5KS 35 
5KS "N2'" N6  N 0 1 Y N N 26.065 -11.235 1.772  6.132   1.208  1.385  "N2'" 5KS 36 
5KS "CB'" C21 C 0 1 Y N N 27.491 -9.871  2.827  6.618   -0.719 0.593  "CB'" 5KS 37 
5KS "CA'" C22 C 0 1 Y N N 26.921 -9.163  1.774  5.366   -0.380 0.169  "CA'" 5KS 38 
5KS "CD'" C23 C 0 1 Y N N 28.475 -9.359  3.832  7.356   -1.969 0.284  "CD'" 5KS 39 
5KS "CI'" C24 C 0 1 Y N N 28.623 -7.986  4.042  8.637   -2.169 0.795  "CI'" 5KS 40 
5KS "CH'" C25 C 0 1 Y N N 29.524 -7.512  4.996  9.319   -3.333 0.505  "CH'" 5KS 41 
5KS "CG'" C26 C 0 1 Y N N 30.277 -8.407  5.753  8.734   -4.301 -0.294 "CG'" 5KS 42 
5KS "CF'" C27 C 0 1 Y N N 30.122 -9.778  5.557  7.461   -4.106 -0.806 "CF'" 5KS 43 
5KS "CE'" C28 C 0 1 Y N N 29.219 -10.252 4.606  6.769   -2.948 -0.515 "CE'" 5KS 44 
5KS "F'"  F2  F 0 1 N N N 31.161 -7.932  6.681  9.406   -5.438 -0.577 "F'"  5KS 45 
5KS H1    H1  H 0 1 N N N 20.141 -4.689  -0.351 -3.570  4.547  2.369  H1    5KS 46 
5KS H2    H2  H 0 1 N N N 20.500 -5.793  1.020  -2.770  3.175  3.173  H2    5KS 47 
5KS H3    H3  H 0 1 N N N 20.255 -6.622  -1.905 -2.480  3.856  0.213  H3    5KS 48 
5KS H4    H4  H 0 1 N N N 18.539 -9.582  0.023  -2.838  -0.062 0.370  H4    5KS 49 
5KS H5    H5  H 0 1 N N N 18.079 -5.993  -1.000 -4.778  3.126  0.732  H5    5KS 50 
5KS H6    H6  H 0 1 N N N 24.704 -9.384  -2.643 2.481   3.858  -0.206 H6    5KS 51 
5KS H7    H7  H 0 1 N N N 26.642 -10.315 -1.515 4.779   3.130  -0.727 H7    5KS 52 
5KS H8    H8  H 0 1 N N N 23.696 -11.282 0.559  2.839   -0.061 -0.374 H8    5KS 53 
5KS H9    H9  H 0 1 N N N 24.912 -12.315 -3.463 3.569   4.557  -2.359 H9    5KS 54 
5KS H10   H10 H 0 1 N N N 26.163 -11.081 -3.836 2.772   3.186  -3.168 H10   5KS 55 
5KS H11   H11 H 0 1 N N N 22.381 -4.746  0.194  -1.480  5.179  3.338  H11   5KS 56 
5KS H12   H12 H 0 1 N N N 18.566 -6.336  1.268  -4.263  1.946  2.746  H12   5KS 57 
5KS H13   H13 H 0 1 N N N 18.230 -7.900  -2.499 -3.745  2.295  -1.347 H13   5KS 58 
5KS H14   H14 H 0 1 N N N 16.354 -8.727  0.856  -4.716  -0.963 0.465  H14   5KS 59 
5KS H15   H15 H 0 1 N N N 14.461 -8.281  2.152  -9.090  -1.416 -1.428 H15   5KS 60 
5KS H16   H16 H 0 1 N N N 12.482 -8.610  3.589  -10.311 -3.487 -0.909 H16   5KS 61 
5KS H17   H17 H 0 1 N N N 10.057 -9.242  0.129  -7.017  -4.855 1.438  H17   5KS 62 
5KS H18   H18 H 0 1 N N N 12.051 -8.952  -1.319 -5.781  -2.793 0.918  H18   5KS 63 
5KS H19   H19 H 0 1 N N N 18.844 -11.219 -1.622 -1.808  -0.663 -1.702 H19   5KS 64 
5KS H20   H20 H 0 1 N N N 20.523 -8.986  -2.232 -1.232  2.151  -0.988 H20   5KS 65 
5KS H21   H21 H 0 1 N N N 22.806 -8.950  -1.202 1.233   2.149  0.989  H21   5KS 66 
5KS H22   H22 H 0 1 N N N 24.560 -11.273 -5.526 1.479   5.189  -3.328 H22   5KS 67 
5KS H23   H23 H 0 1 N N N 23.716 -9.573  2.161  1.809   -0.665 1.696  H23   5KS 68 
5KS H24   H24 H 0 1 N N N 25.178 -8.779  -0.337 3.745   2.294  1.349  H24   5KS 69 
5KS H25   H25 H 0 1 N N N 26.313 -12.198 -0.159 4.265   1.956  -2.745 H25   5KS 70 
5KS H26   H26 H 0 1 N N N 27.124 -8.136  1.510  4.712   -0.967 -0.459 H26   5KS 71 
5KS H27   H27 H 0 1 N N N 28.037 -7.288  3.463  9.094   -1.415 1.418  H27   5KS 72 
5KS H28   H28 H 0 1 N N N 29.638 -6.449  5.148  10.312  -3.489 0.901  H28   5KS 73 
5KS H29   H29 H 0 1 N N N 30.703 -10.475 6.143  7.008   -4.863 -1.429 H29   5KS 74 
5KS H30   H30 H 0 1 N N N 29.094 -11.316 4.467  5.774   -2.799 -0.909 H30   5KS 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5KS "O6'" "C6'" SING N N 1  
5KS "C6'" "C5'" SING N N 2  
5KS "C5'" "O5'" SING N N 3  
5KS "C5'" "C4'" SING N N 4  
5KS N2    N3    DOUB Y N 5  
5KS N2    N1    SING Y N 6  
5KS "O5'" "C1'" SING N N 7  
5KS O2    C2    SING N N 8  
5KS N3    CB    SING Y N 9  
5KS C3    N1    SING N N 10 
5KS C3    C2    SING N N 11 
5KS C3    C4    SING N N 12 
5KS "C4'" "O4'" SING N N 13 
5KS "C4'" "C3'" SING N N 14 
5KS N1    CA    SING Y N 15 
5KS C1    C2    SING N N 16 
5KS C1    S1    SING N N 17 
5KS C1    O5    SING N N 18 
5KS "C1'" S1    SING N N 19 
5KS "C1'" "C2'" SING N N 20 
5KS C5    C4    SING N N 21 
5KS C5    O5    SING N N 22 
5KS C5    C6    SING N N 23 
5KS C4    O4    SING N N 24 
5KS CB    CA    DOUB Y N 25 
5KS CB    CD    SING N N 26 
5KS O6    C6    SING N N 27 
5KS CE    CD    DOUB Y N 28 
5KS CE    CF    SING Y N 29 
5KS "C3'" "C2'" SING N N 30 
5KS "C3'" "N1'" SING N N 31 
5KS "C2'" "O2'" SING N N 32 
5KS CD    CI    SING Y N 33 
5KS CF    CG    DOUB Y N 34 
5KS "N1'" "N2'" SING Y N 35 
5KS "N1'" "CA'" SING Y N 36 
5KS CI    CH    DOUB Y N 37 
5KS "N2'" "N3'" DOUB Y N 38 
5KS "CA'" "CB'" DOUB Y N 39 
5KS CG    CH    SING Y N 40 
5KS CG    F     SING N N 41 
5KS "CB'" "N3'" SING Y N 42 
5KS "CB'" "CD'" SING N N 43 
5KS "CD'" "CI'" DOUB Y N 44 
5KS "CD'" "CE'" SING Y N 45 
5KS "CI'" "CH'" SING Y N 46 
5KS "CE'" "CF'" DOUB Y N 47 
5KS "CH'" "CG'" DOUB Y N 48 
5KS "CF'" "CG'" SING Y N 49 
5KS "CG'" "F'"  SING N N 50 
5KS C6    H1    SING N N 51 
5KS C6    H2    SING N N 52 
5KS C5    H3    SING N N 53 
5KS C2    H4    SING N N 54 
5KS C4    H5    SING N N 55 
5KS "C5'" H6    SING N N 56 
5KS "C4'" H7    SING N N 57 
5KS "C2'" H8    SING N N 58 
5KS "C6'" H9    SING N N 59 
5KS "C6'" H10   SING N N 60 
5KS O6    H11   SING N N 61 
5KS O4    H12   SING N N 62 
5KS C3    H13   SING N N 63 
5KS CA    H14   SING N N 64 
5KS CI    H15   SING N N 65 
5KS CH    H16   SING N N 66 
5KS CF    H17   SING N N 67 
5KS CE    H18   SING N N 68 
5KS O2    H19   SING N N 69 
5KS C1    H20   SING N N 70 
5KS "C1'" H21   SING N N 71 
5KS "O6'" H22   SING N N 72 
5KS "O2'" H23   SING N N 73 
5KS "C3'" H24   SING N N 74 
5KS "O4'" H25   SING N N 75 
5KS "CA'" H26   SING N N 76 
5KS "CI'" H27   SING N N 77 
5KS "CH'" H28   SING N N 78 
5KS "CF'" H29   SING N N 79 
5KS "CE'" H30   SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5KS SMILES           ACDLabs              12.01 "C(C4C(O)C(C(O)C(SC1C(O)C(C(C(O1)CO)O)n3nnc(c2ccc(F)cc2)c3)O4)n5cc(nn5)c6ccc(F)cc6)O" 
5KS InChI            InChI                1.03  
"InChI=1S/C28H30F2N6O8S/c29-15-5-1-13(2-6-15)17-9-35(33-31-17)21-23(39)19(11-37)43-27(25(21)41)45-28-26(42)22(24(40)20(12-38)44-28)36-10-18(32-34-36)14-3-7-16(30)8-4-14/h1-10,19-28,37-42H,11-12H2/t19-,20-,21+,22+,23+,24+,25-,26-,27+,28+/m1/s1" 
5KS InChIKey         InChI                1.03  MOGSKCDGWWHHND-MQFIMZJJSA-N 
5KS SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@@H]([C@H]2O)n3cc(nn3)c4ccc(F)cc4)[C@H](O)[C@H]([C@H]1O)n5cc(nn5)c6ccc(F)cc6" 
5KS SMILES           CACTVS               3.385 "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH]([CH]2O)n3cc(nn3)c4ccc(F)cc4)[CH](O)[CH]([CH]1O)n5cc(nn5)c6ccc(F)cc6" 
5KS SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1c2cn(nn2)[C@H]3[C@H]([C@H](O[C@H]([C@@H]3O)S[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)n5cc(nn5)c6ccc(cc6)F)O)CO)O)F" 
5KS SMILES           "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1c2cn(nn2)C3C(C(OC(C3O)SC4C(C(C(C(O4)CO)O)n5cc(nn5)c6ccc(cc6)F)O)CO)O)F" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5KS "SYSTEMATIC NAME" ACDLabs              12.01 "3-deoxy-3-[4-(4-fluorophenyl)-1H-1,2,3-triazol-1-yl]-beta-D-galactopyranosyl 3-deoxy-3-[4-(4-fluorophenyl)-1H-1,2,3-triazol-1-yl]-1-thio-beta-D-galactopyranoside" 
5KS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
"(2S,3R,4S,5R,6R)-4-[4-(4-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2S,3R,4S,5R,6R)-4-[4-(4-fluorophenyl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5KS "Create component" 2015-10-14 RCSB 
5KS "Initial release"  2016-08-23 RCSB 
# 
