data_59S
#

_chem_comp.id                                   59S
_chem_comp.name                                 "(2S)-2-[[(2S)-2-[[(E)-3-(4-methoxyphenyl)prop-2-enoyl]amino]-3-methyl-butanoyl]amino]-4-methyl-N-[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepiperidin-3-yl]propan-2-yl]pentanamide"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H42 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-02-02
_chem_comp.pdbx_modified_date                   2022-04-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       542.667
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    59S
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7WO3
_chem_comp.pdbx_subcomponent_list               "K3Z VAL LEU ELF"
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
59S  C26  C9   C  0  1  N  N  N  19.989  16.919  30.564   -3.659   0.580  -1.039  C02   K3Z   1  
59S  C27  C22  C  0  1  N  N  N  19.257  17.670  31.712   -4.887   0.384  -0.269  C04   K3Z   2  
59S  C28  C10  C  0  1  N  N  N  20.219  17.342  32.570   -6.079   0.334  -0.900  C05   K3Z   3  
59S  C29  C23  C  0  1  Y  N  N  20.286  17.727  34.052   -7.313   0.137  -0.125  C06   K3Z   4  
59S  C30  C24  C  0  1  Y  N  N  19.281  18.383  34.726   -7.255   0.007   1.267  C07   K3Z   5  
59S  C31  C25  C  0  1  Y  N  N  19.474  18.676  36.084   -8.414  -0.177   1.987  C08   K3Z   6  
59S  C32  C26  C  0  1  Y  N  N  20.660  18.314  36.729   -9.639  -0.234   1.334  C09   K3Z   7  
59S  C34  C27  C  0  1  N  N  N  22.226  18.825  38.407  -12.004  -0.464   1.316  C11   K3Z   8  
59S  C35  C28  C  0  1  Y  N  N  21.666  17.647  36.030   -9.703  -0.106  -0.048  C12   K3Z   9  
59S  C36  C29  C  0  1  Y  N  N  21.478  17.359  34.700   -8.550   0.084  -0.778  C13   K3Z  10  
59S  O37  O4   O  0  1  N  N  N  21.020  17.351  30.176   -3.713   0.698  -2.249  O03   K3Z  11  
59S  O33  O3   O  0  1  N  N  N  20.872  18.606  38.092  -10.779  -0.416   2.049  O10   K3Z  12  
59S  N25  N4   N  0  1  N  N  N  19.497  15.615  30.035   -2.469   0.631  -0.409  N     VAL  13  
59S  C21  C6   C  0  1  N  N  S  20.281  14.952  29.030   -1.240   0.827  -1.181  CA    VAL  14  
59S  C20  C5   C  0  1  N  N  N  19.486  14.850  27.731   -0.072   0.255  -0.419  C     VAL  15  
59S  O38  O5   O  0  1  N  N  N  18.378  14.432  27.755   -0.157   0.077   0.778  O     VAL  16  
59S  C22  C7   C  0  1  N  N  N  20.585  13.550  29.583   -1.015   2.323  -1.411  CB    VAL  17  
59S  C24  C8   C  0  1  N  N  N  21.433  12.695  28.571   -2.129   2.874  -2.303  CG1   VAL  18  
59S  C23  C21  C  0  1  N  N  N  21.327  13.722  30.967   -1.030   3.053  -0.066  CG2   VAL  19  
59S  N19  N3   N  0  1  N  N  N  20.116  15.291  26.467    1.068  -0.057  -1.067  N     LEU  20  
59S  C14  C18  C  0  1  N  N  S  19.312  15.174  25.249    2.161  -0.719  -0.350  CA    LEU  21  
59S  C13  C2   C  0  1  N  N  N  19.396  13.709  24.833    3.467  -0.420  -1.039  C     LEU  22  
59S  O39  O6   O  0  1  N  N  N  20.396  13.108  25.005    3.484   0.278  -2.031  O     LEU  23  
59S  C15  C3   C  0  1  N  N  N  19.866  16.084  24.144    1.923  -2.231  -0.342  CB    LEU  24  
59S  C16  C19  C  0  1  N  N  N  20.116  17.549  24.636    0.662  -2.544   0.465  CG    LEU  25  
59S  C17  C4   C  0  1  N  N  N  18.786  18.192  25.101    0.354  -4.040   0.370  CD1   LEU  26  
59S  C18  C20  C  0  1  N  N  N  20.722  18.360  23.484    0.884  -2.161   1.929  CD2   LEU  27  
59S  C07  C16  C  0  1  N  N  N  19.092   9.089  26.860    7.022   2.746   1.392  C6    ELF  28  
59S  C03  C12  C  0  1  N  N  S  18.508  11.601  23.940    5.887  -0.636  -1.222  C11   ELF  29  
59S  C06  C15  C  0  1  N  N  N  18.959  10.467  26.435    6.938   1.716   0.259  C13   ELF  30  
59S  C10  C1   C  0  1  N  N  N  16.460  10.111  26.998    7.905   0.152   1.927  C15   ELF  31  
59S  C04  C13  C  0  1  N  N  N  17.337  10.847  24.660    7.031  -0.736  -0.211  C17   ELF  32  
59S  C02  C11  C  0  1  N  N  N  18.649  11.292  22.463    6.110  -1.630  -2.332  C24   ELF  33  
59S  C05  C14  C  0  1  N  N  S  17.611  10.911  26.243    6.842   0.320   0.880  C25   ELF  34  
59S  C08  C17  C  0  1  N  N  N  18.376   8.837  28.125    8.357   2.569   2.116  C27   ELF  35  
59S  N12  N1   N  0  1  N  N  N  18.252  13.000  24.224    4.617  -0.927  -0.552  N3    ELF  36  
59S  N09  N2   N  0  1  N  N  N  16.872   9.010  27.989    8.558   1.173   2.484  N4    ELF  37  
59S  O01  O1   O  0  1  N  N  N  17.775  10.762  21.871    5.292  -2.493  -2.542  O3    ELF  38  
59S  O11  O2   O  0  1  N  N  N  15.318  10.377  26.790    8.182  -0.972   2.290  O4    ELF  39  
59S  H33  H33  H  0  1  N  N  N  18.337  18.232  31.784   -4.840   0.280   0.805  H041  K3Z  40  
59S  H12  H12  H  0  1  N  N  N  21.033  16.746  32.184   -6.127   0.438  -1.974  H051  K3Z  41  
59S  H35  H35  H  0  1  N  N  N  18.368  18.665  34.222   -6.303   0.050   1.775  H071  K3Z  42  
59S  H36  H36  H  0  1  N  N  N  18.699  19.186  36.637   -8.370  -0.278   3.062  H081  K3Z  43  
59S  H37  H37  H  0  1  N  N  N  22.322  19.047  39.480  -12.835  -0.613   2.006  H111  K3Z  44  
59S  H39  H39  H  0  1  N  N  N  22.606  19.675  37.822  -11.970  -1.290   0.605  H113  K3Z  45  
59S  H38  H38  H  0  1  N  N  N  22.809  17.924  38.165  -12.143   0.473   0.777  H112  K3Z  46  
59S  H40  H40  H  0  1  N  N  N  22.581  17.361  36.528  -10.657  -0.151  -0.551  H121  K3Z  47  
59S  H41  H41  H  0  1  N  N  N  22.252  16.846  34.148   -8.601   0.189  -1.851  H131  K3Z  48  
59S  H44  H44  H  0  1  N  N  N  18.645  15.213  30.370   -2.427   0.537   0.556  H     VAL  49  
59S  H7   H7   H  0  1  N  N  N  21.224  15.489  28.847   -1.329   0.321  -2.142  HA    VAL  50  
59S  H8   H8   H  0  1  N  N  N  19.634  13.028  29.765   -0.052   2.475  -1.897  HB    VAL  51  
59S  H9   H9   H  0  1  N  N  N  21.628  11.702  29.003   -3.079   2.825  -1.770  HG11  VAL  52  
59S  H10  H10  H  0  1  N  N  N  20.875  12.582  27.630   -1.910   3.911  -2.559  HG12  VAL  53  
59S  H11  H11  H  0  1  N  N  N  22.388  13.203  28.373   -2.193   2.280  -3.214  HG13  VAL  54  
59S  H30  H30  H  0  1  N  N  N  20.704  14.324  31.645   -0.236   2.661   0.569  HG21  VAL  55  
59S  H31  H31  H  0  1  N  N  N  21.504  12.732  31.413   -0.870   4.119  -0.230  HG22  VAL  56  
59S  H32  H32  H  0  1  N  N  N  22.290  14.230  30.806   -1.993   2.901   0.420  HG23  VAL  57  
59S  H43  H43  H  0  1  N  N  N  21.048  15.652  26.446    1.164   0.156  -2.009  H2    LEU  58  
59S  H25  H25  H  0  1  N  N  N  18.264  15.440  25.453    2.198  -0.351   0.675  HA    LEU  59  
59S  H2   H2   H  0  1  N  N  N  19.144  16.110  23.315    1.798  -2.585  -1.365  HB2   LEU  60  
59S  H3   H3   H  0  1  N  N  N  20.819  15.665  23.788    2.779  -2.730   0.113  HB3   LEU  61  
59S  H26  H26  H  0  1  N  N  N  20.822  17.528  25.479   -0.177  -1.975   0.064  HG    LEU  62  
59S  H4   H4   H  0  1  N  N  N  18.362  17.602  25.927    1.193  -4.609   0.771  HD11  LEU  63  
59S  H5   H5   H  0  1  N  N  N  18.976  19.219  25.445   -0.544  -4.264   0.945  HD12  LEU  64  
59S  H6   H6   H  0  1  N  N  N  18.075  18.212  24.262    0.196  -4.313  -0.673  HD13  LEU  65  
59S  H27  H27  H  0  1  N  N  N  20.903  19.393  23.817    1.722  -2.730   2.331  HD21  LEU  66  
59S  H28  H28  H  0  1  N  N  N  21.674  17.903  23.175    1.103  -1.095   1.997  HD22  LEU  67  
59S  H29  H29  H  0  1  N  N  N  20.025  18.366  22.633   -0.015  -2.385   2.504  HD23  LEU  68  
59S  H21  H21  H  0  1  N  N  N  18.678   8.434  26.079    6.961   3.752   0.977  H1    ELF  69  
59S  H22  H22  H  0  1  N  N  N  20.159   8.861  27.003    6.202   2.586   2.093  H2    ELF  70  
59S  H15  H15  H  0  1  N  N  N  19.443  11.305  24.438    5.857   0.371  -1.637  H3    ELF  71  
59S  H19  H19  H  0  1  N  N  N  19.496  10.584  25.482    7.831   1.780  -0.362  H4    ELF  72  
59S  H20  H20  H  0  1  N  N  N  19.424  11.107  27.199    6.053   1.909  -0.347  H5    ELF  73  
59S  H16  H16  H  0  1  N  N  N  16.379  11.334  24.426    7.032  -1.728   0.241  H6    ELF  74  
59S  H17  H17  H  0  1  N  N  N  17.307   9.799  24.328    7.981  -0.567  -0.718  H7    ELF  75  
59S  H14  H14  H  0  1  N  N  N  19.559  11.559  21.946    7.001  -1.571  -2.939  H8    ELF  76  
59S  H18  H18  H  0  1  N  N  N  17.529  11.966  26.544    5.860   0.196   1.338  H9    ELF  77  
59S  H23  H23  H  0  1  N  N  N  18.584   7.807  28.449    9.167   2.889   1.461  H10   ELF  78  
59S  H24  H24  H  0  1  N  N  N  18.745   9.542  28.885    8.361   3.181   3.019  H11   ELF  79  
59S  H1   H1   H  0  1  N  N  N  17.379  13.445  24.025    4.604  -1.485   0.241  H12   ELF  80  
59S  H42  H42  H  0  1  N  N  N  16.211   8.458  28.498    9.207   0.975   3.177  H15   ELF  81  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
59S  O01  C02  DOUB  N  N   1  
59S  C02  C03  SING  N  N   2  
59S  C18  C16  SING  N  N   3  
59S  C03  N12  SING  N  N   4  
59S  C03  C04  SING  N  N   5  
59S  C15  C16  SING  N  N   6  
59S  C15  C14  SING  N  N   7  
59S  N12  C13  SING  N  N   8  
59S  C16  C17  SING  N  N   9  
59S  C04  C05  SING  N  N  10  
59S  C13  O39  DOUB  N  N  11  
59S  C13  C14  SING  N  N  12  
59S  C14  N19  SING  N  N  13  
59S  C05  C06  SING  N  N  14  
59S  C05  C10  SING  N  N  15  
59S  C06  C07  SING  N  N  16  
59S  N19  C20  SING  N  N  17  
59S  O11  C10  DOUB  N  N  18  
59S  C07  C08  SING  N  N  19  
59S  C10  N09  SING  N  N  20  
59S  C20  O38  DOUB  N  N  21  
59S  C20  C21  SING  N  N  22  
59S  N09  C08  SING  N  N  23  
59S  C24  C22  SING  N  N  24  
59S  C21  C22  SING  N  N  25  
59S  C21  N25  SING  N  N  26  
59S  C22  C23  SING  N  N  27  
59S  N25  C26  SING  N  N  28  
59S  O37  C26  DOUB  N  N  29  
59S  C26  C27  SING  N  N  30  
59S  C27  C28  DOUB  N  E  31  
59S  C28  C29  SING  N  N  32  
59S  C29  C36  DOUB  Y  N  33  
59S  C29  C30  SING  Y  N  34  
59S  C36  C35  SING  Y  N  35  
59S  C30  C31  DOUB  Y  N  36  
59S  C35  C32  DOUB  Y  N  37  
59S  C31  C32  SING  Y  N  38  
59S  C32  O33  SING  N  N  39  
59S  O33  C34  SING  N  N  40  
59S  N12  H1   SING  N  N  41  
59S  C15  H2   SING  N  N  42  
59S  C15  H3   SING  N  N  43  
59S  C17  H4   SING  N  N  44  
59S  C17  H5   SING  N  N  45  
59S  C17  H6   SING  N  N  46  
59S  C21  H7   SING  N  N  47  
59S  C22  H8   SING  N  N  48  
59S  C24  H9   SING  N  N  49  
59S  C24  H10  SING  N  N  50  
59S  C24  H11  SING  N  N  51  
59S  C28  H12  SING  N  N  52  
59S  C02  H14  SING  N  N  53  
59S  C03  H15  SING  N  N  54  
59S  C04  H16  SING  N  N  55  
59S  C04  H17  SING  N  N  56  
59S  C05  H18  SING  N  N  57  
59S  C06  H19  SING  N  N  58  
59S  C06  H20  SING  N  N  59  
59S  C07  H21  SING  N  N  60  
59S  C07  H22  SING  N  N  61  
59S  C08  H23  SING  N  N  62  
59S  C08  H24  SING  N  N  63  
59S  C14  H25  SING  N  N  64  
59S  C16  H26  SING  N  N  65  
59S  C18  H27  SING  N  N  66  
59S  C18  H28  SING  N  N  67  
59S  C18  H29  SING  N  N  68  
59S  C23  H30  SING  N  N  69  
59S  C23  H31  SING  N  N  70  
59S  C23  H32  SING  N  N  71  
59S  C27  H33  SING  N  N  72  
59S  C30  H35  SING  N  N  73  
59S  C31  H36  SING  N  N  74  
59S  C34  H37  SING  N  N  75  
59S  C34  H38  SING  N  N  76  
59S  C34  H39  SING  N  N  77  
59S  C35  H40  SING  N  N  78  
59S  C36  H41  SING  N  N  79  
59S  N09  H42  SING  N  N  80  
59S  N19  H43  SING  N  N  81  
59S  N25  H44  SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
59S  InChI             InChI                 1.03   "InChI=1S/C29H42N4O6/c1-18(2)15-24(28(37)31-22(17-34)16-21-7-6-14-30-27(21)36)32-29(38)26(19(3)4)33-25(35)13-10-20-8-11-23(39-5)12-9-20/h8-13,17-19,21-22,24,26H,6-7,14-16H2,1-5H3,(H,30,36)(H,31,37)(H,32,38)(H,33,35)/b13-10+/t21-,22-,24-,26-/m0/s1"  
59S  InChIKey          InChI                 1.03   ICHROBBMJKBDDC-SXDMNLNLSA-N  
59S  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(/C=C/C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O)cc1"  
59S  SMILES            CACTVS                3.385  "COc1ccc(C=CC(=O)N[CH](C(C)C)C(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCCNC2=O)C=O)cc1"  
59S  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)/C=C/c2ccc(cc2)OC"  
59S  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)C=Cc2ccc(cc2)OC"  
#
_pdbx_chem_comp_identifier.comp_id          59S
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-2-[[(~{E})-3-(4-methoxyphenyl)prop-2-enoyl]amino]-3-methyl-butanoyl]amino]-4-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]pentanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
59S  "Create component"  2022-02-02  PDBJ  
59S  "Initial release"   2022-04-13  RCSB  
##
