data_14S
# 
_chem_comp.id                                    14S 
_chem_comp.name                                  "4-(cyclopentylamino)-2-[(2-methoxybenzyl)amino]-N-[3-(2-oxopyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H34 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-09 
_chem_comp.pdbx_modified_date                    2013-03-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        466.576 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     14S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4FF8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
14S O33 O33 O 0 1 N N N 35.869 9.190  20.329 -7.642 1.423  -2.106 O33 14S 1  
14S C28 C28 C 0 1 N N N 34.798 9.600  20.755 -7.944 1.666  -0.956 C28 14S 2  
14S C32 C32 C 0 1 N N N 34.499 9.759  22.226 -8.887 2.766  -0.522 C32 14S 3  
14S C34 C34 C 0 1 N N N 33.016 10.207 22.240 -8.610 2.927  0.991  C34 14S 4  
14S C29 C29 C 0 1 N N N 32.620 10.544 20.779 -8.055 1.534  1.360  C29 14S 5  
14S N24 N24 N 0 1 N N N 33.742 9.976  20.035 -7.494 0.993  0.116  N24 14S 6  
14S C21 C21 C 0 1 N N N 33.608 9.854  18.583 -6.560 -0.134 0.053  C21 14S 7  
14S C19 C19 C 0 1 N N N 34.311 11.075 17.990 -5.124 0.387  0.139  C19 14S 8  
14S C15 C15 C 0 1 N N N 34.732 10.858 16.540 -4.149 -0.790 0.073  C15 14S 9  
14S N10 N10 N 0 1 N N N 34.887 12.114 15.829 -2.774 -0.290 0.156  N10 14S 10 
14S C6  C6  C 0 1 N N N 33.864 12.813 15.338 -1.740 -1.153 0.117  C6  14S 11 
14S O11 O11 O 0 1 N N N 32.712 12.443 15.466 -1.948 -2.347 0.013  O11 14S 12 
14S C2  C2  C 0 1 Y N N 34.140 14.103 14.622 -0.359 -0.651 0.200  C2  14S 13 
14S C1  C1  C 0 1 Y N N 33.197 15.125 14.537 0.734  -1.543 0.273  C1  14S 14 
14S N4  N4  N 0 1 N N N 31.977 14.972 15.113 0.529  -2.906 0.269  N4  14S 15 
14S C8  C8  C 0 1 N N N 30.914 15.969 15.074 1.659  -3.817 0.464  C8  14S 16 
14S C14 C14 C 0 1 N N N 31.080 17.028 16.155 2.325  -4.132 -0.891 C14 14S 17 
14S C18 C18 C 0 1 N N N 29.959 16.879 17.173 2.730  -5.623 -0.778 C18 14S 18 
14S C17 C17 C 0 1 N N N 29.113 15.688 16.748 1.544  -6.241 0.002  C17 14S 19 
14S C13 C13 C 0 1 N N N 29.578 15.285 15.351 1.163  -5.159 1.032  C13 14S 20 
14S C5  C5  C 0 1 Y N N 35.377 14.289 14.027 -0.092 0.722  0.202  C5  14S 21 
14S N9  N9  N 0 1 Y N N 35.654 15.428 13.390 1.160  1.132  0.278  N9  14S 22 
14S C7  C7  C 0 1 Y N N 34.745 16.417 13.305 2.163  0.266  0.351  C7  14S 23 
14S N3  N3  N 0 1 Y N N 33.526 16.267 13.877 1.962  -1.044 0.346  N3  14S 24 
14S N12 N12 N 0 1 N N N 35.086 17.551 12.651 3.455  0.743  0.427  N12 14S 25 
14S C16 C16 C 0 1 N N N 34.142 18.645 12.511 3.703  2.187  0.427  C16 14S 26 
14S C20 C20 C 0 1 Y N N 34.560 19.895 13.249 5.186  2.441  0.518  C20 14S 27 
14S C23 C23 C 0 1 Y N N 35.910 20.163 13.481 5.756  2.776  1.731  C23 14S 28 
14S C27 C27 C 0 1 Y N N 36.289 21.321 14.153 7.117  3.010  1.815  C27 14S 29 
14S C30 C30 C 0 1 Y N N 35.313 22.210 14.593 7.909  2.909  0.687  C30 14S 30 
14S C25 C25 C 0 1 Y N N 33.965 21.946 14.364 7.343  2.576  -0.529 C25 14S 31 
14S C22 C22 C 0 1 Y N N 33.584 20.783 13.696 5.980  2.335  -0.615 C22 14S 32 
14S O26 O26 O 0 1 N N N 32.253 20.532 13.460 5.422  2.001  -1.808 O26 14S 33 
14S C31 C31 C 0 1 N N N 31.321 20.395 14.529 6.299  1.909  -2.932 C31 14S 34 
14S H1  H1  H 0 1 N N N 34.628 8.806  22.760 -8.662 3.692  -1.051 H1  14S 35 
14S H2  H2  H 0 1 N N N 35.146 10.524 22.680 -9.922 2.470  -0.691 H2  14S 36 
14S H3  H3  H 0 1 N N N 32.898 11.096 22.876 -7.867 3.704  1.171  H3  14S 37 
14S H4  H4  H 0 1 N N N 32.381 9.395  22.624 -9.531 3.138  1.536  H4  14S 38 
14S H5  H5  H 0 1 N N N 32.544 11.630 20.624 -7.279 1.626  2.119  H5  14S 39 
14S H6  H6  H 0 1 N N N 31.669 10.066 20.500 -8.859 0.891  1.719  H6  14S 40 
14S H7  H7  H 0 1 N N N 32.546 9.848  18.297 -6.751 -0.812 0.885  H7  14S 41 
14S H8  H8  H 0 1 N N N 34.088 8.929  18.231 -6.697 -0.667 -0.888 H8  14S 42 
14S H9  H9  H 0 1 N N N 35.208 11.292 18.589 -4.933 1.065  -0.693 H9  14S 43 
14S H10 H10 H 0 1 N N N 33.625 11.933 18.034 -4.988 0.920  1.080  H10 14S 44 
14S H11 H11 H 0 1 N N N 33.965 10.254 16.033 -4.340 -1.467 0.905  H11 14S 45 
14S H12 H12 H 0 1 N N N 35.691 10.320 16.525 -4.286 -1.322 -0.868 H12 14S 46 
14S H13 H13 H 0 1 N N N 35.811 12.474 15.701 -2.609 0.662  0.238  H13 14S 47 
14S H14 H14 H 0 1 N N N 31.587 14.148 14.702 -0.364 -3.262 0.136  H14 14S 48 
14S H15 H15 H 0 1 N N N 30.879 16.454 14.087 2.386  -3.370 1.143  H15 14S 49 
14S H16 H16 H 0 1 N N N 32.051 16.896 16.654 1.615  -3.991 -1.707 H16 14S 50 
14S H17 H17 H 0 1 N N N 31.035 18.029 15.701 3.206  -3.507 -1.038 H17 14S 51 
14S H18 H18 H 0 1 N N N 30.381 16.703 18.173 2.821  -6.074 -1.766 H18 14S 52 
14S H19 H19 H 0 1 N N N 29.343 17.790 17.190 3.661  -5.728 -0.220 H19 14S 53 
14S H20 H20 H 0 1 N N N 28.050 15.969 16.726 0.709  -6.441 -0.669 H20 14S 54 
14S H21 H21 H 0 1 N N N 29.257 14.853 17.449 1.855  -7.157 0.505  H21 14S 55 
14S H22 H22 H 0 1 N N N 28.835 15.604 14.605 1.649  -5.363 1.986  H22 14S 56 
14S H23 H23 H 0 1 N N N 29.702 14.193 15.301 0.081  -5.131 1.162  H23 14S 57 
14S H24 H24 H 0 1 N N N 36.121 13.508 14.079 -0.900 1.436  0.143  H24 14S 58 
14S H25 H25 H 0 1 N N N 35.345 17.278 11.724 4.199  0.123  0.481  H25 14S 59 
14S H26 H26 H 0 1 N N N 34.044 18.887 11.442 3.316  2.622  -0.494 H26 14S 60 
14S H27 H27 H 0 1 N N N 33.168 18.318 12.903 3.203  2.642  1.282  H27 14S 61 
14S H28 H28 H 0 1 N N N 36.663 19.469 13.138 5.140  2.855  2.614  H28 14S 62 
14S H29 H29 H 0 1 N N N 37.334 21.528 14.332 7.561  3.271  2.764  H29 14S 63 
14S H30 H30 H 0 1 N N N 35.603 23.110 15.115 8.971  3.092  0.755  H30 14S 64 
14S H31 H31 H 0 1 N N N 33.214 22.643 14.704 7.962  2.498  -1.410 H31 14S 65 
14S H32 H32 H 0 1 N N N 30.319 20.199 14.120 6.783  2.872  -3.094 H32 14S 66 
14S H33 H33 H 0 1 N N N 31.624 19.557 15.174 7.057  1.150  -2.740 H33 14S 67 
14S H34 H34 H 0 1 N N N 31.301 21.323 15.119 5.727  1.636  -3.818 H34 14S 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
14S C16 N12 SING N N 1  
14S C16 C20 SING N N 2  
14S N12 C7  SING N N 3  
14S C20 C23 DOUB Y N 4  
14S C20 C22 SING Y N 5  
14S C7  N9  DOUB Y N 6  
14S C7  N3  SING Y N 7  
14S N9  C5  SING Y N 8  
14S O26 C22 SING N N 9  
14S O26 C31 SING N N 10 
14S C23 C27 SING Y N 11 
14S C22 C25 DOUB Y N 12 
14S N3  C1  DOUB Y N 13 
14S C5  C2  DOUB Y N 14 
14S C27 C30 DOUB Y N 15 
14S C25 C30 SING Y N 16 
14S C1  C2  SING Y N 17 
14S C1  N4  SING N N 18 
14S C2  C6  SING N N 19 
14S C8  N4  SING N N 20 
14S C8  C13 SING N N 21 
14S C8  C14 SING N N 22 
14S C6  O11 DOUB N N 23 
14S C6  N10 SING N N 24 
14S C13 C17 SING N N 25 
14S N10 C15 SING N N 26 
14S C14 C18 SING N N 27 
14S C15 C19 SING N N 28 
14S C17 C18 SING N N 29 
14S C19 C21 SING N N 30 
14S C21 N24 SING N N 31 
14S N24 C28 SING N N 32 
14S N24 C29 SING N N 33 
14S O33 C28 DOUB N N 34 
14S C28 C32 SING N N 35 
14S C29 C34 SING N N 36 
14S C32 C34 SING N N 37 
14S C32 H1  SING N N 38 
14S C32 H2  SING N N 39 
14S C34 H3  SING N N 40 
14S C34 H4  SING N N 41 
14S C29 H5  SING N N 42 
14S C29 H6  SING N N 43 
14S C21 H7  SING N N 44 
14S C21 H8  SING N N 45 
14S C19 H9  SING N N 46 
14S C19 H10 SING N N 47 
14S C15 H11 SING N N 48 
14S C15 H12 SING N N 49 
14S N10 H13 SING N N 50 
14S N4  H14 SING N N 51 
14S C8  H15 SING N N 52 
14S C14 H16 SING N N 53 
14S C14 H17 SING N N 54 
14S C18 H18 SING N N 55 
14S C18 H19 SING N N 56 
14S C17 H20 SING N N 57 
14S C17 H21 SING N N 58 
14S C13 H22 SING N N 59 
14S C13 H23 SING N N 60 
14S C5  H24 SING N N 61 
14S N12 H25 SING N N 62 
14S C16 H26 SING N N 63 
14S C16 H27 SING N N 64 
14S C23 H28 SING N N 65 
14S C27 H29 SING N N 66 
14S C30 H30 SING N N 67 
14S C25 H31 SING N N 68 
14S C31 H32 SING N N 69 
14S C31 H33 SING N N 70 
14S C31 H34 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
14S SMILES           ACDLabs              12.01 "O=C4N(CCCNC(=O)c2cnc(nc2NC1CCCC1)NCc3ccccc3OC)CCC4"                                                                                                                                                
14S InChI            InChI                1.03  "InChI=1S/C25H34N6O3/c1-34-21-11-5-2-8-18(21)16-27-25-28-17-20(23(30-25)29-19-9-3-4-10-19)24(33)26-13-7-15-31-14-6-12-22(31)32/h2,5,8,11,17,19H,3-4,6-7,9-10,12-16H2,1H3,(H,26,33)(H2,27,28,29,30)" 
14S InChIKey         InChI                1.03  ZXZLVQGNVOKCAS-UHFFFAOYSA-N                                                                                                                                                                         
14S SMILES_CANONICAL CACTVS               3.370 "COc1ccccc1CNc2ncc(C(=O)NCCCN3CCCC3=O)c(NC4CCCC4)n2"                                                                                                                                                
14S SMILES           CACTVS               3.370 "COc1ccccc1CNc2ncc(C(=O)NCCCN3CCCC3=O)c(NC4CCCC4)n2"                                                                                                                                                
14S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COc1ccccc1CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCCC4=O"                                                                                                                                                
14S SMILES           "OpenEye OEToolkits" 1.7.6 "COc1ccccc1CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCCC4=O"                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
14S "SYSTEMATIC NAME" ACDLabs              12.01 "4-(cyclopentylamino)-2-[(2-methoxybenzyl)amino]-N-[3-(2-oxopyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide"                 
14S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-(cyclopentylamino)-2-[(2-methoxyphenyl)methylamino]-N-[3-(2-oxidanylidenepyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
14S "Create component" 2012-10-09 RCSB 
14S "Initial release"  2013-03-13 RCSB 
# 
