data_YSR
# 
_chem_comp.id                                    YSR 
_chem_comp.name                                  "7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H28 N6 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-20 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        552.602 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YSR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PGP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YSR C10  C1  C 0 1 Y N N N N N -21.657 -11.874 9.814  -0.889 1.111  0.510  C10  YSR 1  
YSR C11  C2  C 0 1 Y N N N N N -21.038 -12.190 8.495  -2.300 0.744  0.261  C11  YSR 2  
YSR C12  C3  C 0 1 Y N N N N N -19.848 -11.609 8.133  -3.270 1.019  1.221  C12  YSR 3  
YSR C13  C4  C 0 1 Y N N N N N -19.254 -12.002 6.960  -4.598 0.672  0.982  C13  YSR 4  
YSR C14  C5  C 0 1 N N N N N N -17.953 -11.363 6.551  -5.602 0.952  1.964  C14  YSR 5  
YSR C16  C6  C 0 1 Y N N N N N -19.817 -12.954 6.152  -4.949 0.046  -0.227 C16  YSR 6  
YSR C19  C7  C 0 1 N N N N N N -18.200 -14.609 2.818  -5.870 -3.020 -0.315 C19  YSR 7  
YSR C01  C8  C 0 1 N N N N N N -22.804 -12.398 15.649 4.298  4.207  -0.030 C01  YSR 8  
YSR C02  C9  C 0 1 N N S N N N -23.321 -12.015 14.290 3.541  2.971  0.459  C02  YSR 9  
YSR C03  C10 C 0 1 Y N N N N N -22.689 -12.776 13.135 2.165  2.949  -0.156 C03  YSR 10 
YSR C04  C11 C 0 1 Y N N N N N -22.350 -12.126 11.936 1.186  2.099  0.354  C04  YSR 11 
YSR C06  C12 C 0 1 Y N N N N N -22.073 -10.672 10.343 -0.058 0.591  1.487  C06  YSR 12 
YSR C07  C13 C 0 1 N N N N N N -22.260 -9.373  9.675  -0.432 -0.428 2.468  C07  YSR 13 
YSR C22  C14 C 0 1 Y N N N N N -21.008 -13.536 6.512  -3.970 -0.224 -1.177 C22  YSR 14 
YSR C23  C15 C 0 1 Y N N N N N -21.584 -13.175 7.707  -2.660 0.126  -0.941 C23  YSR 15 
YSR C24  C16 C 0 1 Y N N N N N -21.809 -12.818 10.849 -0.092 2.093  -0.235 C24  YSR 16 
YSR C25  C17 C 0 1 Y N N N N N -21.562 -14.197 10.957 -0.366 2.934  -1.317 C25  YSR 17 
YSR C26  C18 C 0 1 Y N N N N N -21.894 -14.831 12.128 0.610  3.759  -1.799 C26  YSR 18 
YSR C27  C19 C 0 1 Y N N N N N -22.459 -14.145 13.208 1.873  3.769  -1.223 C27  YSR 19 
YSR C29  C20 C 0 1 N N N N N N -25.625 -13.065 14.754 4.752  0.719  0.982  C29  YSR 20 
YSR C30  C21 C 0 1 N N N N N N -26.914 -12.754 14.210 5.441  -0.300 0.053  C30  YSR 21 
YSR C31  C22 C 0 1 N N N N N N -28.277 -13.350 14.444 4.748  -1.661 0.143  C31  YSR 22 
YSR C33  C23 C 0 1 N N N N N N -29.528 -15.165 15.318 4.732  -3.905 -0.791 C33  YSR 23 
YSR C34  C24 C 0 1 N N N N N N -29.662 -14.617 16.688 6.072  -4.620 -0.542 C34  YSR 24 
YSR C36  C25 C 0 1 N N N N N N -28.246 -14.165 16.661 6.519  -3.326 0.162  C36  YSR 25 
YSR C38  C26 C 0 1 N N N N N N -25.521 -11.296 13.284 4.608  1.431  -1.188 C38  YSR 26 
YSR N05  N1  N 0 1 Y N N N N N -22.464 -10.824 11.596 1.183  1.189  1.385  N05  YSR 27 
YSR N15  N2  N 0 1 N N N N N N -16.984 -10.872 6.237  -6.399 1.174  2.743  N15  YSR 28 
YSR N17  N3  N 0 1 N N N N N N -19.098 -13.237 4.962  -6.269 -0.308 -0.468 N17  YSR 29 
YSR N28  N4  N 0 1 N N N N N N -24.759 -12.130 14.198 4.271  1.764  0.066  N28  YSR 30 
YSR N32  N5  N 0 1 N N N N N N -28.179 -14.537 15.226 5.493  -2.643 -0.657 N32  YSR 31 
YSR N35  N6  N 0 1 N N N N N N -30.587 -13.499 16.701 5.968  -5.777 0.357  N35  YSR 32 
YSR O08  O1  O 0 1 N N N N N N -22.243 -8.340  10.343 0.471  -0.857 3.375  O08  YSR 33 
YSR O09  O2  O 0 1 N N N N N N -22.585 -9.380  8.462  -1.558 -0.889 2.467  O09  YSR 34 
YSR O20  O3  O 0 1 N N N N N N -20.843 -14.411 3.506  -5.919 -1.543 -2.536 O20  YSR 35 
YSR O21  O4  O 0 1 N N N N N N -19.588 -15.867 4.759  -8.032 -1.781 -1.271 O21  YSR 36 
YSR O37  O5  O 0 1 N N N N N N -26.869 -11.693 13.371 5.277  0.269  -1.278 O37  YSR 37 
YSR O39  O6  O 0 1 N N N N N N -25.162 -10.406 12.642 4.335  2.116  -2.154 O39  YSR 38 
YSR S18  S1  S 0 1 N N N N N N -19.495 -14.564 4.074  -6.614 -1.695 -1.306 S18  YSR 39 
YSR H121 H1  H 0 0 N N N N N N -19.389 -10.858 8.759  -2.994 1.500  2.148  H121 YSR 40 
YSR H193 H2  H 0 0 N N N N N N -17.220 -14.724 3.305  -4.797 -2.852 -0.231 H193 YSR 41 
YSR H191 H3  H 0 0 N N N N N N -18.375 -15.458 2.141  -6.317 -3.023 0.680  H191 YSR 42 
YSR H192 H4  H 0 0 N N N N N N -18.215 -13.672 2.242  -6.051 -3.980 -0.798 H192 YSR 43 
YSR H011 H5  H 0 0 N N N N N N -23.315 -11.800 16.418 3.755  5.106  0.263  H011 YSR 44 
YSR H012 H6  H 0 0 N N N N N N -22.997 -13.466 15.827 5.293  4.223  0.415  H012 YSR 45 
YSR H013 H7  H 0 0 N N N N N N -21.722 -12.208 15.696 4.386  4.174  -1.116 H013 YSR 46 
YSR H021 H8  H 0 0 N N N N N N -23.066 -10.955 14.142 3.453  3.005  1.545  H021 YSR 47 
YSR H221 H9  H 0 0 N N N N N N -21.482 -14.263 5.869  -4.240 -0.705 -2.106 H221 YSR 48 
YSR H231 H10 H 0 0 N N N N N N -22.484 -13.676 8.033  -1.905 -0.086 -1.684 H231 YSR 49 
YSR H251 H11 H 0 0 N N N N N N -21.121 -14.745 10.138 -1.346 2.931  -1.770 H251 YSR 50 
YSR H261 H12 H 0 0 N N N N N N -21.713 -15.892 12.218 0.397  4.408  -2.636 H261 YSR 51 
YSR H271 H13 H 0 0 N N N N N N -22.719 -14.684 14.107 2.634  4.427  -1.616 H271 YSR 52 
YSR H1   H14 H 0 1 N N N N N N -25.324 -14.085 14.473 3.917  0.255  1.506  H1   YSR 53 
YSR H291 H15 H 0 0 N N N N N N -25.637 -12.975 15.850 5.467  1.132  1.693  H291 YSR 54 
YSR H2   H16 H 0 1 N N N N N N -26.742 -13.444 13.371 6.497  -0.392 0.304  H2   YSR 55 
YSR H311 H17 H 0 0 N N N N N N -28.905 -12.619 14.974 4.720  -1.987 1.183  H311 YSR 56 
YSR H312 H18 H 0 0 N N N N N N -28.736 -13.593 13.474 3.731  -1.578 -0.239 H312 YSR 57 
YSR H332 H19 H 0 0 N N N N N N -30.261 -14.771 14.599 4.325  -4.069 -1.788 H332 YSR 58 
YSR H331 H20 H 0 0 N N N N N N -29.520 -16.264 15.269 3.997  -4.062 -0.001 H331 YSR 59 
YSR H341 H21 H 0 0 N N N N N N -29.866 -15.381 17.452 6.628  -4.839 -1.454 H341 YSR 60 
YSR H361 H22 H 0 0 N N N N N N -27.574 -14.744 17.311 6.308  -3.312 1.231  H361 YSR 61 
YSR H362 H23 H 0 0 N N N N N N -28.110 -13.091 16.857 7.541  -3.028 -0.073 H362 YSR 62 
YSR H051 H24 H 0 0 N N N N N N -22.791 -10.093 12.195 1.942  0.996  1.957  H051 YSR 63 
YSR H171 H25 H 0 0 N N N N N N -18.137 -13.336 5.219  -6.989 0.256  -0.147 H171 YSR 64 
YSR H352 H27 H 0 0 N N N N N N -30.666 -13.142 17.632 6.868  -6.213 0.491  H352 YSR 65 
YSR H351 H28 H 0 0 N N N N N N -30.248 -12.779 16.095 5.560  -5.512 1.241  H351 YSR 66 
YSR H5   H30 H 0 1 N N N N N N -22.505 -7.606  9.799  0.132  -1.530 3.980  H5   YSR 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YSR C19 S18  SING N N 1  
YSR O20 S18  DOUB N N 2  
YSR S18 O21  DOUB N N 3  
YSR S18 N17  SING N N 4  
YSR N17 C16  SING N N 5  
YSR C16 C22  DOUB Y N 6  
YSR C16 C13  SING Y N 7  
YSR N15 C14  TRIP N N 8  
YSR C22 C23  SING Y N 9  
YSR C14 C13  SING N N 10 
YSR C13 C12  DOUB Y N 11 
YSR C23 C11  DOUB Y N 12 
YSR C12 C11  SING Y N 13 
YSR O09 C07  DOUB N N 14 
YSR C11 C10  SING N N 15 
YSR C07 O08  SING N N 16 
YSR C07 C06  SING N N 17 
YSR C10 C06  DOUB Y N 18 
YSR C10 C24  SING Y N 19 
YSR C06 N05  SING Y N 20 
YSR C24 C25  DOUB Y N 21 
YSR C24 C04  SING Y N 22 
YSR C25 C26  SING Y N 23 
YSR N05 C04  SING Y N 24 
YSR C04 C03  DOUB Y N 25 
YSR C26 C27  DOUB Y N 26 
YSR O39 C38  DOUB N N 27 
YSR C03 C27  SING Y N 28 
YSR C03 C02  SING N N 29 
YSR C38 O37  SING N N 30 
YSR C38 N28  SING N N 31 
YSR O37 C30  SING N N 32 
YSR N28 C02  SING N N 33 
YSR N28 C29  SING N N 34 
YSR C30 C31  SING N N 35 
YSR C30 C29  SING N N 36 
YSR C02 C01  SING N N 37 
YSR C31 N32  SING N N 38 
YSR N32 C33  SING N N 39 
YSR N32 C36  SING N N 40 
YSR C33 C34  SING N N 41 
YSR C36 C34  SING N N 42 
YSR C34 N35  SING N N 43 
YSR C12 H121 SING N N 44 
YSR C19 H193 SING N N 45 
YSR C19 H191 SING N N 46 
YSR C19 H192 SING N N 47 
YSR C01 H011 SING N N 48 
YSR C01 H012 SING N N 49 
YSR C01 H013 SING N N 50 
YSR C02 H021 SING N N 51 
YSR C22 H221 SING N N 52 
YSR C23 H231 SING N N 53 
YSR C25 H251 SING N N 54 
YSR C26 H261 SING N N 55 
YSR C27 H271 SING N N 56 
YSR C29 H1   SING N N 57 
YSR C29 H291 SING N N 58 
YSR C30 H2   SING N N 59 
YSR C31 H311 SING N N 60 
YSR C31 H312 SING N N 61 
YSR C33 H332 SING N N 62 
YSR C33 H331 SING N N 63 
YSR C34 H341 SING N N 64 
YSR C36 H361 SING N N 65 
YSR C36 H362 SING N N 66 
YSR N05 H051 SING N N 67 
YSR N17 H171 SING N N 68 
YSR N35 H352 SING N N 69 
YSR N35 H351 SING N N 70 
YSR O08 H5   SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YSR InChI            InChI                1.06  "InChI=1S/C26H28N6O6S/c1-14(32-13-18(38-26(32)35)12-31-10-17(28)11-31)19-4-3-5-20-22(24(25(33)34)29-23(19)20)15-6-7-21(16(8-15)9-27)30-39(2,36)37/h3-8,14,17-18,29-30H,10-13,28H2,1-2H3,(H,33,34)/t14-,18?/m0/s1" 
YSR InChIKey         InChI                1.06  BOVDUXOTLWXHQC-PIVQAISJSA-N                                                                                                                                                                                       
YSR SMILES_CANONICAL CACTVS               3.385 "C[C@H](N1C[C@@H](CN2CC(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(c5)C#N"                                                                                                                          
YSR SMILES           CACTVS               3.385 "C[CH](N1C[CH](CN2CC(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(c5)C#N"                                                                                                                             
YSR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)C#N)NS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)N"                                                                                                                                
YSR SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)C#N)NS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)N"                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           YSR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YSR "Create component" 2023-06-21 PDBE 
YSR "Initial release"  2024-07-10 RCSB 
# 
