data_YRR
# 
_chem_comp.id                                    YRR 
_chem_comp.name                                  "3-HYDROXY-PYRROLIDIN-2-YLMETHYL-MONOPHOSPHATE GROUP" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C5 H12 N O5 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        197.126 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     YRR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        "OpenEye/OEToolkits V1.4.2" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1BNK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YRR OP3    O3P  O 0 1 N Y N -0.358 33.181 9.991  5.551 -1.678 -4.719 OP3    YRR 1  
YRR P      P    P 0 1 N N N -0.863 34.672 10.319 4.966 -0.202 -4.407 P      YRR 2  
YRR OP1    O1P  O 0 1 N N N -1.402 35.317 9.090  4.803 0.689  -5.603 OP1    YRR 3  
YRR OP2    O2P  O 0 1 N N N -1.723 34.588 11.538 5.965 0.360  -3.267 OP2    YRR 4  
YRR "O5'"  O5*  O 0 1 N N N 0.462  35.434 10.766 3.604 -0.496 -3.582 "O5'"  YRR 5  
YRR "C5'"  C5*  C 0 1 N N N 1.605  35.516 9.932  3.672 -1.329 -2.439 "C5'"  YRR 6  
YRR "C4'"  C4*  C 0 1 N N R 2.736  36.138 10.717 2.278 -1.452 -1.842 "C4'"  YRR 7  
YRR "N4'"  N4*  N 0 1 N N N 2.239  37.343 11.352 2.308 -2.245 -0.610 "N4'"  YRR 8  
YRR "C3'"  C3*  C 0 1 N N S 3.206  35.251 11.865 1.697 -0.105 -1.405 "C3'"  YRR 9  
YRR "O3'"  O3*  O 0 1 N N N 4.556  35.562 12.203 0.735 0.323  -2.359 "O3'"  YRR 10 
YRR "C2'"  C2*  C 0 1 N N N 2.252  35.624 12.986 1.027 -0.374 -0.060 "C2'"  YRR 11 
YRR "C1'"  C1*  C 0 1 N N N 1.996  37.106 12.737 1.085 -1.884 0.101  "C1'"  YRR 12 
YRR HOP3   3HOP H 0 0 N N N -0.014 32.769 10.775 6.352 -1.762 -5.278 HOP3   YRR 13 
YRR HC51   1HC5 H 0 0 N N N 1.883  34.529 9.492  4.042 -2.312 -2.733 HC51   YRR 14 
YRR HC52   2HC5 H 0 0 N N N 1.399  36.057 8.979  4.354 -0.885 -1.712 HC52   YRR 15 
YRR HC4    HC4  H 0 1 N N N 3.572  36.311 10.000 1.631 -1.943 -2.579 HC4    YRR 16 
YRR HN4    HN4  H 0 1 N N N 1.414  37.710 10.878 3.111 -1.960 -0.048 HN4    YRR 17 
YRR HC3    HC3  H 0 1 N N N 3.195  34.160 11.632 2.456 0.679  -1.307 HC3    YRR 18 
YRR "HO3'" H3T  H 0 0 N Y N 4.848  35.009 12.918 1.146 0.229  -3.234 "HO3'" YRR 19 
YRR HC21   1HC2 H 0 0 N N N 1.332  34.995 13.043 0.000 0.001  -0.003 HC21   YRR 20 
YRR HC22   2HC2 H 0 0 N N N 2.618  35.380 14.010 1.613 0.098  0.739  HC22   YRR 21 
YRR HC11   1HC1 H 0 0 N N N 2.589  37.771 13.406 1.118 -2.188 1.151  HC11   YRR 22 
YRR HC12   2HC1 H 0 0 N N N 0.984  37.437 13.067 0.219 -2.364 -0.368 HC12   YRR 23 
YRR HO1    HO1  H 0 1 N N N -1.174 34.570 12.313 6.845 0.702  -3.533 HO1    YRR 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YRR OP3   P      SING N N 1  
YRR OP3   HOP3   SING N N 2  
YRR P     OP1    DOUB N N 3  
YRR P     OP2    SING N N 4  
YRR P     "O5'"  SING N N 5  
YRR "O5'" "C5'"  SING N N 6  
YRR "C5'" "C4'"  SING N N 7  
YRR "C5'" HC51   SING N N 8  
YRR "C5'" HC52   SING N N 9  
YRR "C4'" "N4'"  SING N N 10 
YRR "C4'" "C3'"  SING N N 11 
YRR "C4'" HC4    SING N N 12 
YRR "N4'" "C1'"  SING N N 13 
YRR "N4'" HN4    SING N N 14 
YRR "C3'" "O3'"  SING N N 15 
YRR "C3'" "C2'"  SING N N 16 
YRR "C3'" HC3    SING N N 17 
YRR "O3'" "HO3'" SING N N 18 
YRR "C2'" "C1'"  SING N N 19 
YRR "C2'" HC21   SING N N 20 
YRR "C2'" HC22   SING N N 21 
YRR "C1'" HC11   SING N N 22 
YRR "C1'" HC12   SING N N 23 
YRR HO1   OP2    SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YRR SMILES           ACDLabs              10.04 "O=P(OCC1NCCC1O)(O)O"                                                                   
YRR SMILES_CANONICAL CACTVS               3.341 "O[C@H]1CCN[C@@H]1CO[P](O)(O)=O"                                                        
YRR SMILES           CACTVS               3.341 "O[CH]1CCN[CH]1CO[P](O)(O)=O"                                                           
YRR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1CN[C@@H]([C@H]1O)COP(=O)(O)O"                                                        
YRR SMILES           "OpenEye OEToolkits" 1.5.0 "C1CNC(C1O)COP(=O)(O)O"                                                                 
YRR InChI            InChI                1.03  "InChI=1S/C5H12NO5P/c7-5-1-2-6-4(5)3-11-12(8,9)10/h4-7H,1-3H2,(H2,8,9,10)/t4-,5+/m1/s1" 
YRR InChIKey         InChI                1.03  MEWWGEMXBXQSAB-UHNVWZDZSA-N                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YRR "SYSTEMATIC NAME" ACDLabs              10.04 "[(2R,3S)-3-hydroxypyrrolidin-2-yl]methyl dihydrogen phosphate" 
YRR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S)-3-hydroxypyrrolidin-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YRR "Create component"  1999-07-08 PDBJ 
YRR "Modify descriptor" 2011-06-04 RCSB 
# 
