data_YQR
# 
_chem_comp.id                                    YQR 
_chem_comp.name                                  "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(1-methylpyrazol-4-yl)-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H25 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-20 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        423.465 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YQR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PH3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YQR C19  C1  C 0 1 Y N N N N N -22.388 -12.205 12.017 0.735  1.191  -0.598 C19  YQR 1  
YQR C17  C2  C 0 1 Y N N N N N -21.582 -14.239 10.981 2.273  2.438  0.806  C17  YQR 2  
YQR C18  C3  C 0 1 Y N N N N N -21.875 -12.870 10.894 1.949  1.272  0.109  C18  YQR 3  
YQR C16  C4  C 0 1 Y N N N N N -21.848 -14.897 12.169 1.410  3.497  0.798  C16  YQR 4  
YQR C15  C5  C 0 1 Y N N N N N -22.381 -14.227 13.287 0.212  3.424  0.101  C15  YQR 5  
YQR C14  C6  C 0 1 Y N N N N N -22.651 -12.869 13.230 -0.129 2.284  -0.593 C14  YQR 6  
YQR C10  C7  C 0 1 N N N N N N -27.731 -12.718 15.742 -3.800 -1.712 0.504  C10  YQR 7  
YQR C12  C8  C 0 1 N N N N N N -25.516 -11.483 13.545 -2.800 1.636  0.662  C12  YQR 8  
YQR C21  C9  C 0 1 Y N N N N N -22.221 -10.728 10.414 1.802  -0.781 -0.883 C21  YQR 9  
YQR C22  C10 C 0 1 N N N N N N -22.430 -9.402  9.771  2.081  -2.143 -1.336 C22  YQR 10 
YQR C01  C11 C 0 1 N N N N N N -22.706 -12.470 15.771 -1.994 3.633  -1.515 C01  YQR 11 
YQR C02  C12 C 0 1 N N S N N N -23.247 -12.069 14.427 -1.434 2.219  -1.344 C02  YQR 12 
YQR C04  C13 C 0 1 N N N N N N -25.459 -13.386 14.865 -3.059 0.188  -1.094 C04  YQR 13 
YQR C05  C14 C 0 1 N N N N N N -26.871 -13.062 14.553 -3.931 -0.247 0.088  C05  YQR 14 
YQR C06  C15 C 0 1 N N N N N N -27.813 -14.168 14.171 -5.398 -0.525 -0.239 C06  YQR 15 
YQR C07  C16 C 0 1 N N N N N N -28.789 -13.644 15.216 -5.315 -1.683 0.776  C07  YQR 16 
YQR C08  C17 C 0 1 N N N N N N -29.361 -14.675 16.118 -6.043 -2.950 0.322  C08  YQR 17 
YQR C25  C18 C 0 1 Y N N N N N -21.766 -11.920 9.862  2.630  -0.013 -0.083 C25  YQR 18 
YQR C26  C19 C 0 1 Y N N N N N -21.261 -12.165 8.476  3.943  -0.411 0.472  C26  YQR 19 
YQR C27  C20 C 0 1 Y N N N N N -20.422 -11.379 7.686  5.084  -0.690 -0.248 C27  YQR 20 
YQR C29  C21 C 0 1 N N N N N N -19.501 -11.610 5.385  7.428  -1.376 0.301  C29  YQR 21 
YQR C31  C22 C 0 1 Y N N N N N -21.569 -13.270 7.691  4.260  -0.571 1.837  C31  YQR 22 
YQR N03  N1  N 0 1 N N N N N N -24.695 -12.268 14.383 -2.390 1.402  -0.594 N03  YQR 23 
YQR N09  N2  N 0 1 N N N N N N -30.539 -15.288 15.527 -6.010 -3.947 1.399  N09  YQR 24 
YQR N20  N3  N 0 1 Y N N N N N -22.551 -10.907 11.682 0.669  -0.048 -1.190 N20  YQR 25 
YQR N28  N4  N 0 1 Y N N N N N -20.280 -12.025 6.535  6.050  -1.010 0.634  N28  YQR 26 
YQR N30  N5  N 0 1 Y N N N N N -20.976 -13.135 6.527  5.512  -0.928 1.924  N30  YQR 27 
YQR O11  O1  O 0 1 N N N N N N -26.799 -11.993 13.615 -3.682 0.736  1.121  O11  YQR 28 
YQR O13  O2  O 0 1 N N N N N N -25.197 -10.569 12.846 -2.408 2.577  1.324  O13  YQR 29 
YQR O23  O3  O 0 1 N N N N N N -22.840 -9.390  8.579  3.114  -2.695 -1.004 O23  YQR 30 
YQR O24  O4  O 0 1 N N N N N N -22.380 -8.356  10.476 1.194  -2.788 -2.122 O24  YQR 31 
YQR H171 H1  H 0 0 N N N N N N -21.158 -14.768 10.140 3.203  2.502  1.352  H171 YQR 32 
YQR H161 H2  H 0 0 N N N N N N -21.641 -15.955 12.241 1.662  4.398  1.339  H161 YQR 33 
YQR H151 H3  H 0 0 N N N N N N -22.581 -14.776 14.196 -0.461 4.269  0.104  H151 YQR 34 
YQR H101 H4  H 0 0 N N N N N N -27.306 -13.020 16.710 -3.515 -2.374 -0.313 H101 YQR 35 
YQR H102 H5  H 0 0 N N N N N N -28.036 -11.662 15.789 -3.197 -1.860 1.400  H102 YQR 36 
YQR H011 H6  H 0 0 N N N N N N -23.178 -11.859 16.554 -2.162 4.078  -0.535 H011 YQR 37 
YQR H013 H7  H 0 0 N N N N N N -22.926 -13.532 15.953 -1.283 4.241  -2.074 H013 YQR 38 
YQR H012 H8  H 0 0 N N N N N N -21.617 -12.313 15.790 -2.938 3.586  -2.059 H012 YQR 39 
YQR H021 H9  H 0 0 N N N N N N -23.025 -11.004 14.265 -1.266 1.774  -2.325 H021 YQR 40 
YQR H041 H10 H 0 0 N N N N N N -25.154 -14.310 14.352 -2.327 -0.582 -1.335 H041 YQR 41 
YQR H042 H11 H 0 0 N N N N N N -25.322 -13.506 15.950 -3.675 0.417  -1.963 H042 YQR 42 
YQR H061 H12 H 0 0 N N N N N N -28.182 -14.114 13.136 -6.073 0.275  0.064  H061 YQR 43 
YQR H062 H13 H 0 0 N N N N N N -27.432 -15.180 14.372 -5.562 -0.854 -1.265 H062 YQR 44 
YQR H071 H14 H 0 0 N N N N N N -29.591 -13.070 14.728 -5.570 -1.390 1.794  H071 YQR 45 
YQR H082 H15 H 0 0 N N N N N N -28.605 -15.452 16.301 -7.079 -2.707 0.083  H082 YQR 46 
YQR H081 H16 H 0 0 N N N N N N -29.641 -14.203 17.072 -5.552 -3.354 -0.563 H081 YQR 47 
YQR H271 H17 H 0 0 N N N N N N -19.977 -10.433 7.957  5.185  -0.658 -1.323 H271 YQR 48 
YQR H291 H18 H 0 0 N N N N N N -19.608 -12.353 4.581  8.047  -0.479 0.275  H291 YQR 49 
YQR H292 H19 H 0 0 N N N N N N -19.862 -10.633 5.031  7.814  -2.061 1.056  H292 YQR 50 
YQR H293 H20 H 0 0 N N N N N N -18.442 -11.528 5.670  7.450  -1.861 -0.674 H293 YQR 51 
YQR H311 H21 H 0 0 N N N N N N -22.192 -14.101 7.989  3.584  -0.422 2.666  H311 YQR 52 
YQR H091 H22 H 0 0 N N N N N N -30.906 -15.977 16.152 -6.485 -4.794 1.123  H091 YQR 53 
YQR H1   H23 H 0 1 N N N N N N -31.232 -14.586 15.361 -5.061 -4.141 1.683  H1   YQR 54 
YQR H201 H25 H 0 0 N N N N N N -22.873 -10.189 12.300 -0.065 -0.364 -1.739 H201 YQR 55 
YQR H2   H26 H 0 1 N N N N N N -22.689 -7.616  9.967  1.466  -3.682 -2.370 H2   YQR 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YQR C29 N28  SING N N 1  
YQR N30 N28  SING Y N 2  
YQR N30 C31  DOUB Y N 3  
YQR N28 C27  SING Y N 4  
YQR C27 C26  DOUB Y N 5  
YQR C31 C26  SING Y N 6  
YQR C26 C25  SING N N 7  
YQR O23 C22  DOUB N N 8  
YQR C22 C21  SING N N 9  
YQR C22 O24  SING N N 10 
YQR C25 C21  DOUB Y N 11 
YQR C25 C18  SING Y N 12 
YQR C21 N20  SING Y N 13 
YQR C18 C17  DOUB Y N 14 
YQR C18 C19  SING Y N 15 
YQR C17 C16  SING Y N 16 
YQR N20 C19  SING Y N 17 
YQR C19 C14  DOUB Y N 18 
YQR C16 C15  DOUB Y N 19 
YQR O13 C12  DOUB N N 20 
YQR C14 C15  SING Y N 21 
YQR C14 C02  SING N N 22 
YQR C12 O11  SING N N 23 
YQR C12 N03  SING N N 24 
YQR O11 C05  SING N N 25 
YQR C06 C05  SING N N 26 
YQR C06 C07  SING N N 27 
YQR N03 C02  SING N N 28 
YQR N03 C04  SING N N 29 
YQR C02 C01  SING N N 30 
YQR C05 C04  SING N N 31 
YQR C05 C10  SING N N 32 
YQR C07 C10  SING N N 33 
YQR C07 C08  SING N N 34 
YQR N09 C08  SING N N 35 
YQR C17 H171 SING N N 36 
YQR C16 H161 SING N N 37 
YQR C15 H151 SING N N 38 
YQR C10 H101 SING N N 39 
YQR C10 H102 SING N N 40 
YQR C01 H011 SING N N 41 
YQR C01 H013 SING N N 42 
YQR C01 H012 SING N N 43 
YQR C02 H021 SING N N 44 
YQR C04 H041 SING N N 45 
YQR C04 H042 SING N N 46 
YQR C06 H061 SING N N 47 
YQR C06 H062 SING N N 48 
YQR C07 H071 SING N N 49 
YQR C08 H082 SING N N 50 
YQR C08 H081 SING N N 51 
YQR C27 H271 SING N N 52 
YQR C29 H291 SING N N 53 
YQR C29 H292 SING N N 54 
YQR C29 H293 SING N N 55 
YQR C31 H311 SING N N 56 
YQR N09 H091 SING N N 57 
YQR N09 H1   SING N N 58 
YQR N20 H201 SING N N 59 
YQR O24 H2   SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YQR InChI            InChI                1.06  "InChI=1S/C22H25N5O4/c1-12(27-11-22(31-21(27)30)6-13(7-22)8-23)15-4-3-5-16-17(14-9-24-26(2)10-14)19(20(28)29)25-18(15)16/h3-5,9-10,12-13,25H,6-8,11,23H2,1-2H3,(H,28,29)/t12-,13-,22-/m0/s1" 
YQR InChIKey         InChI                1.06  BKNRKINLTFUPKK-MZFXBISCSA-N                                                                                                                                                                  
YQR SMILES_CANONICAL CACTVS               3.385 "C[C@H](N1C[C@@]2(C[C@H](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5cnn(C)c5"                                                                                                                     
YQR SMILES           CACTVS               3.385 "C[CH](N1C[C]2(C[CH](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5cnn(C)c5"                                                                                                                         
YQR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3cnn(c3)C)C(=O)O)N4CC5(CC(C5)CN)OC4=O"                                                                                                                            
YQR SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3cnn(c3)C)C(=O)O)N4CC5(CC(C5)CN)OC4=O"                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           YQR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(1-methylpyrazol-4-yl)-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YQR "Create component" 2023-06-20 PDBE 
YQR "Initial release"  2024-07-10 RCSB 
# 
