data_Y9R
# 
_chem_comp.id                                    Y9R 
_chem_comp.name                                  "N-{(2S,3R)-4-[(4-aminobenzene-1-sulfonyl)(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}-4-methyl-3-{[(4P)-4-(pyridin-3-yl)pyrimidin-2-yl]amino}benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H41 N7 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-18 
_chem_comp.pdbx_modified_date                    2023-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        679.831 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y9R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FUI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y9R C5  C1  C 0 1 Y N N 19.645 25.308 15.548 -6.794  -0.962 -1.520 C5  Y9R 1  
Y9R C6  C2  C 0 1 Y N N 20.998 25.555 15.749 -8.156  -0.854 -1.304 C6  Y9R 2  
Y9R N1  N1  N 0 1 N N N 21.336 28.857 13.969 -9.150  -4.391 -1.350 N1  Y9R 3  
Y9R C2  C3  C 0 1 Y N N 20.771 27.620 14.505 -8.360  -3.241 -1.411 C2  Y9R 4  
Y9R C4  C4  C 0 1 Y N N 18.889 26.219 14.787 -6.214  -2.207 -1.682 C4  Y9R 5  
Y9R O10 O1  O 0 1 N N N 19.699 22.900 16.318 -4.642  0.143  -2.346 O10 Y9R 6  
Y9R S8  S1  S 0 1 N N N 18.838 23.951 16.064 -5.799  0.489  -1.597 S8  Y9R 7  
Y9R O9  O2  O 0 1 N N N 17.660 23.721 15.128 -6.668  1.554  -1.957 O9  Y9R 8  
Y9R C3  C5  C 0 1 Y N N 19.441 27.368 14.278 -6.992  -3.346 -1.628 C3  Y9R 9  
Y9R C7  C6  C 0 1 Y N N 21.576 26.725 15.209 -8.939  -1.989 -1.243 C7  Y9R 10 
Y9R N11 N2  N 0 1 N N N 18.148 24.254 17.565 -5.280  0.810  -0.058 N11 Y9R 11 
Y9R C12 C7  C 0 1 N N N 19.087 24.643 18.640 -6.079  1.668  0.821  C12 Y9R 12 
Y9R C13 C8  C 0 1 N N N 18.729 23.999 19.975 -7.037  0.804  1.643  C13 Y9R 13 
Y9R C15 C9  C 0 1 N N N 19.755 24.465 20.999 -6.233  -0.120 2.559  C15 Y9R 14 
Y9R C14 C10 C 0 1 N N N 18.832 22.474 19.915 -7.936  1.706  2.491  C14 Y9R 15 
Y9R C16 C11 C 0 1 N N N 16.843 24.942 17.594 -4.022  0.236  0.426  C16 Y9R 16 
Y9R C17 C12 C 0 1 N N R 15.673 24.022 18.077 -2.885  1.234  0.198  C17 Y9R 17 
Y9R O18 O3  O 0 1 N N N 14.492 24.766 18.370 -3.103  2.396  1.001  O18 Y9R 18 
Y9R C19 C13 C 0 1 N N S 15.327 22.882 17.093 -1.554  0.588  0.588  C19 Y9R 19 
Y9R C32 C14 C 0 1 N N N 14.572 23.345 15.825 -1.546  0.301  2.091  C32 Y9R 20 
Y9R C38 C15 C 0 1 Y N N 14.243 22.173 14.898 -0.288  -0.445 2.453  C38 Y9R 21 
Y9R C37 C16 C 0 1 Y N N 15.215 21.574 14.100 0.850   0.252  2.815  C37 Y9R 22 
Y9R C36 C17 C 0 1 Y N N 14.926 20.453 13.314 2.004   -0.432 3.147  C36 Y9R 23 
Y9R C35 C18 C 0 1 Y N N 13.633 19.927 13.310 2.020   -1.814 3.118  C35 Y9R 24 
Y9R C34 C19 C 0 1 Y N N 12.667 20.569 14.077 0.883   -2.512 2.757  C34 Y9R 25 
Y9R C33 C20 C 0 1 Y N N 12.960 21.662 14.869 -0.273  -1.827 2.430  C33 Y9R 26 
Y9R N20 N3  N 0 1 N N N 14.530 21.847 17.816 -0.454  1.498  0.259  N20 Y9R 27 
Y9R C21 C21 C 0 1 N N N 14.905 20.696 18.290 0.780   1.009  0.028  C21 Y9R 28 
Y9R O22 O4  O 0 1 N N N 16.067 20.384 18.356 0.981   -0.188 0.093  O22 Y9R 29 
Y9R C51 C22 C 0 1 Y N N 13.923 19.656 18.770 1.890   1.928  -0.304 C51 Y9R 30 
Y9R C56 C23 C 0 1 Y N N 12.852 19.338 17.946 3.167   1.423  -0.549 C56 Y9R 31 
Y9R C55 C24 C 0 1 Y N N 11.964 18.345 18.303 4.202   2.291  -0.860 C55 Y9R 32 
Y9R C54 C25 C 0 1 Y N N 12.161 17.653 19.522 3.966   3.659  -0.928 C54 Y9R 33 
Y9R C57 C26 C 0 1 N N N 11.203 16.572 20.003 5.093   4.600  -1.267 C57 Y9R 34 
Y9R C53 C27 C 0 1 Y N N 13.182 18.052 20.380 2.700   4.159  -0.686 C53 Y9R 35 
Y9R C52 C28 C 0 1 Y N N 14.094 19.015 20.011 1.662   3.303  -0.380 C52 Y9R 36 
Y9R N60 N4  N 0 1 N N N 10.881 18.045 17.502 5.485   1.790  -1.106 N60 Y9R 37 
Y9R C61 C29 C 0 1 Y N N 10.207 18.933 16.766 5.911   0.636  -0.470 C61 Y9R 38 
Y9R N66 N5  N 0 1 Y N N 9.764  18.502 15.533 7.084   0.115  -0.796 N66 Y9R 39 
Y9R C65 C30 C 0 1 Y N N 9.156  19.355 14.675 7.524   -0.990 -0.199 C65 Y9R 40 
Y9R C64 C31 C 0 1 Y N N 9.065  20.692 15.110 6.731   -1.593 0.780  C64 Y9R 41 
Y9R C63 C32 C 0 1 Y N N 9.521  21.102 16.366 5.512   -1.014 1.089  C63 Y9R 42 
Y9R N62 N6  N 0 1 Y N N 10.089 20.196 17.240 5.138   0.085  0.455  N62 Y9R 43 
Y9R C71 C33 C 0 1 Y N N 8.707  18.804 13.331 8.838   -1.571 -0.567 C71 Y9R 44 
Y9R C76 C34 C 0 1 Y N N 8.412  19.650 12.285 9.633   -0.968 -1.546 C76 Y9R 45 
Y9R C75 C35 C 0 1 Y N N 8.007  19.087 11.050 10.851  -1.550 -1.853 C75 Y9R 46 
Y9R C74 C36 C 0 1 Y N N 7.881  17.708 10.933 11.239  -2.698 -1.188 C74 Y9R 47 
Y9R N73 N7  N 0 1 Y N N 8.154  16.886 11.967 10.467  -3.245 -0.268 N73 Y9R 48 
Y9R C72 C37 C 0 1 Y N N 8.565  17.400 13.146 9.303   -2.725 0.062  C72 Y9R 49 
Y9R H1  H1  H 0 1 N N N 21.601 24.859 16.313 -8.607  0.120  -1.182 H1  Y9R 50 
Y9R H2  H2  H 0 1 N N N 22.306 28.912 14.207 -10.104 -4.317 -1.190 H2  Y9R 51 
Y9R H3  H3  H 0 1 N N N 21.236 28.865 12.974 -8.744  -5.265 -1.468 H3  Y9R 52 
Y9R H4  H4  H 0 1 N N N 17.847 26.008 14.598 -5.150  -2.287 -1.852 H4  Y9R 53 
Y9R H5  H5  H 0 1 N N N 18.840 28.061 13.709 -6.539  -4.317 -1.759 H5  Y9R 54 
Y9R H6  H6  H 0 1 N N N 22.629 26.924 15.340 -10.003 -1.904 -1.074 H6  Y9R 55 
Y9R H7  H7  H 0 1 N N N 20.102 24.329 18.355 -5.418  2.217  1.492  H7  Y9R 56 
Y9R H8  H8  H 0 1 N N N 19.061 25.737 18.755 -6.651  2.373  0.218  H8  Y9R 57 
Y9R H9  H9  H 0 1 N N N 17.717 24.300 20.284 -7.653  0.205  0.972  H9  Y9R 58 
Y9R H10 H10 H 0 1 N N N 19.526 24.018 21.978 -5.525  0.471  3.141  H10 Y9R 59 
Y9R H11 H11 H 0 1 N N N 20.760 24.153 20.679 -6.910  -0.643 3.234  H11 Y9R 60 
Y9R H12 H12 H 0 1 N N N 19.720 25.561 21.080 -5.689  -0.846 1.955  H12 Y9R 61 
Y9R H13 H13 H 0 1 N N N 18.567 22.049 20.894 -8.510  2.365  1.839  H13 Y9R 62 
Y9R H14 H14 H 0 1 N N N 18.142 22.090 19.150 -8.619  1.091  3.077  H14 Y9R 63 
Y9R H15 H15 H 0 1 N N N 19.862 22.186 19.657 -7.321  2.305  3.162  H15 Y9R 64 
Y9R H16 H16 H 0 1 N N N 16.916 25.802 18.276 -4.107  0.019  1.491  H16 Y9R 65 
Y9R H17 H17 H 0 1 N N N 16.612 25.297 16.579 -3.811  -0.686 -0.117 H17 Y9R 66 
Y9R H18 H18 H 0 1 N N N 16.016 23.544 19.006 -2.856  1.519  -0.853 H18 Y9R 67 
Y9R H19 H19 H 0 1 N N N 14.701 25.468 18.975 -3.140  2.217  1.951  H19 Y9R 68 
Y9R H20 H20 H 0 1 N N N 16.273 22.424 16.768 -1.429  -0.346 0.039  H20 Y9R 69 
Y9R H21 H21 H 0 1 N N N 15.200 24.064 15.280 -1.581  1.242  2.640  H21 Y9R 70 
Y9R H22 H22 H 0 1 N N N 13.634 23.833 16.128 -2.415  -0.304 2.350  H22 Y9R 71 
Y9R H23 H23 H 0 1 N N N 16.214 21.984 14.088 0.837   1.332  2.838  H23 Y9R 72 
Y9R H24 H24 H 0 1 N N N 15.699 19.997 12.714 2.892   0.112  3.430  H24 Y9R 73 
Y9R H25 H25 H 0 1 N N N 13.391 19.049 12.730 2.922   -2.349 3.377  H25 Y9R 74 
Y9R H26 H26 H 0 1 N N N 11.652 20.200 14.053 0.896   -3.591 2.733  H26 Y9R 75 
Y9R H27 H27 H 0 1 N N N 12.185 22.118 15.467 -1.162  -2.372 2.148  H27 Y9R 76 
Y9R H28 H28 H 0 1 N N N 13.566 22.072 17.956 -0.614  2.454  0.206  H28 Y9R 77 
Y9R H29 H29 H 0 1 N N N 12.713 19.873 17.018 3.349   0.360  -0.496 H29 Y9R 78 
Y9R H30 H30 H 0 1 N N N 11.565 15.587 19.674 5.138   4.739  -2.347 H30 Y9R 79 
Y9R H31 H31 H 0 1 N N N 11.148 16.594 21.101 4.920   5.562  -0.784 H31 Y9R 80 
Y9R H32 H32 H 0 1 N N N 10.203 16.754 19.582 6.035   4.181  -0.914 H32 Y9R 81 
Y9R H33 H33 H 0 1 N N N 13.260 17.596 21.356 2.522   5.223  -0.740 H33 Y9R 82 
Y9R H34 H34 H 0 1 N N N 14.920 19.272 20.658 0.673   3.697  -0.195 H34 Y9R 83 
Y9R H35 H35 H 0 1 N N N 10.578 17.092 17.470 6.075   2.251  -1.723 H35 Y9R 84 
Y9R H36 H36 H 0 1 N N N 8.627  21.426 14.450 7.060   -2.490 1.282  H36 Y9R 85 
Y9R H37 H37 H 0 1 N N N 9.428  22.138 16.656 4.874   -1.455 1.841  H37 Y9R 86 
Y9R H38 H38 H 0 1 N N N 8.488  20.721 12.404 9.305   -0.071 -2.050 H38 Y9R 87 
Y9R H39 H39 H 0 1 N N N 7.797  19.725 10.205 11.491  -1.112 -2.604 H39 Y9R 88 
Y9R H40 H40 H 0 1 N N N 7.557  17.285 9.993  12.188  -3.155 -1.425 H40 Y9R 89 
Y9R H41 H41 H 0 1 N N N 8.790  16.733 13.965 8.699   -3.202 0.820  H41 Y9R 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y9R C74 C75 DOUB Y N 1  
Y9R C74 N73 SING Y N 2  
Y9R C75 C76 SING Y N 3  
Y9R N73 C72 DOUB Y N 4  
Y9R C76 C71 DOUB Y N 5  
Y9R C72 C71 SING Y N 6  
Y9R C35 C36 DOUB Y N 7  
Y9R C35 C34 SING Y N 8  
Y9R C36 C37 SING Y N 9  
Y9R C71 C65 SING N N 10 
Y9R N1  C2  SING N N 11 
Y9R C34 C33 DOUB Y N 12 
Y9R C37 C38 DOUB Y N 13 
Y9R C3  C2  DOUB Y N 14 
Y9R C3  C4  SING Y N 15 
Y9R C2  C7  SING Y N 16 
Y9R C65 C64 DOUB Y N 17 
Y9R C65 N66 SING Y N 18 
Y9R C4  C5  DOUB Y N 19 
Y9R C33 C38 SING Y N 20 
Y9R C38 C32 SING N N 21 
Y9R C64 C63 SING Y N 22 
Y9R O9  S8  DOUB N N 23 
Y9R C7  C6  DOUB Y N 24 
Y9R N66 C61 DOUB Y N 25 
Y9R C5  C6  SING Y N 26 
Y9R C5  S8  SING N N 27 
Y9R C32 C19 SING N N 28 
Y9R S8  O10 DOUB N N 29 
Y9R S8  N11 SING N N 30 
Y9R C63 N62 DOUB Y N 31 
Y9R C61 N62 SING Y N 32 
Y9R C61 N60 SING N N 33 
Y9R C19 N20 SING N N 34 
Y9R C19 C17 SING N N 35 
Y9R N60 C55 SING N N 36 
Y9R N11 C16 SING N N 37 
Y9R N11 C12 SING N N 38 
Y9R C16 C17 SING N N 39 
Y9R N20 C21 SING N N 40 
Y9R C56 C55 DOUB Y N 41 
Y9R C56 C51 SING Y N 42 
Y9R C17 O18 SING N N 43 
Y9R C21 O22 DOUB N N 44 
Y9R C21 C51 SING N N 45 
Y9R C55 C54 SING Y N 46 
Y9R C12 C13 SING N N 47 
Y9R C51 C52 DOUB Y N 48 
Y9R C54 C57 SING N N 49 
Y9R C54 C53 DOUB Y N 50 
Y9R C14 C13 SING N N 51 
Y9R C13 C15 SING N N 52 
Y9R C52 C53 SING Y N 53 
Y9R C6  H1  SING N N 54 
Y9R N1  H2  SING N N 55 
Y9R N1  H3  SING N N 56 
Y9R C4  H4  SING N N 57 
Y9R C3  H5  SING N N 58 
Y9R C7  H6  SING N N 59 
Y9R C12 H7  SING N N 60 
Y9R C12 H8  SING N N 61 
Y9R C13 H9  SING N N 62 
Y9R C15 H10 SING N N 63 
Y9R C15 H11 SING N N 64 
Y9R C15 H12 SING N N 65 
Y9R C14 H13 SING N N 66 
Y9R C14 H14 SING N N 67 
Y9R C14 H15 SING N N 68 
Y9R C16 H16 SING N N 69 
Y9R C16 H17 SING N N 70 
Y9R C17 H18 SING N N 71 
Y9R O18 H19 SING N N 72 
Y9R C19 H20 SING N N 73 
Y9R C32 H21 SING N N 74 
Y9R C32 H22 SING N N 75 
Y9R C37 H23 SING N N 76 
Y9R C36 H24 SING N N 77 
Y9R C35 H25 SING N N 78 
Y9R C34 H26 SING N N 79 
Y9R C33 H27 SING N N 80 
Y9R N20 H28 SING N N 81 
Y9R C56 H29 SING N N 82 
Y9R C57 H30 SING N N 83 
Y9R C57 H31 SING N N 84 
Y9R C57 H32 SING N N 85 
Y9R C53 H33 SING N N 86 
Y9R C52 H34 SING N N 87 
Y9R N60 H35 SING N N 88 
Y9R C64 H36 SING N N 89 
Y9R C63 H37 SING N N 90 
Y9R C76 H38 SING N N 91 
Y9R C75 H39 SING N N 92 
Y9R C74 H40 SING N N 93 
Y9R C72 H41 SING N N 94 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y9R SMILES           ACDLabs              12.01 "Nc1ccc(cc1)S(=O)(=O)N(CC(C)C)CC(O)C(Cc1ccccc1)NC(=O)c1cc(Nc2nc(ccn2)c2cccnc2)c(C)cc1"                                                                                                                                                                             
Y9R InChI            InChI                1.06  "InChI=1S/C37H41N7O4S/c1-25(2)23-44(49(47,48)31-15-13-30(38)14-16-31)24-35(45)34(20-27-8-5-4-6-9-27)41-36(46)28-12-11-26(3)33(21-28)43-37-40-19-17-32(42-37)29-10-7-18-39-22-29/h4-19,21-22,25,34-35,45H,20,23-24,38H2,1-3H3,(H,41,46)(H,40,42,43)/t34-,35+/m0/s1" 
Y9R InChIKey         InChI                1.06  RKIVUCDKNNHGHG-OIDHKYIRSA-N                                                                                                                                                                                                                                        
Y9R SMILES_CANONICAL CACTVS               3.385 "CC(C)CN(C[C@@H](O)[C@H](Cc1ccccc1)NC(=O)c2ccc(C)c(Nc3nccc(n3)c4cccnc4)c2)[S](=O)(=O)c5ccc(N)cc5"                                                                                                                                                                  
Y9R SMILES           CACTVS               3.385 "CC(C)CN(C[CH](O)[CH](Cc1ccccc1)NC(=O)c2ccc(C)c(Nc3nccc(n3)c4cccnc4)c2)[S](=O)(=O)c5ccc(N)cc5"                                                                                                                                                                     
Y9R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)C(=O)N[C@@H](Cc4ccccc4)[C@@H](CN(CC(C)C)S(=O)(=O)c5ccc(cc5)N)O"                                                                                                                                                                     
Y9R SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)C(=O)NC(Cc4ccccc4)C(CN(CC(C)C)S(=O)(=O)c5ccc(cc5)N)O"                                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y9R "SYSTEMATIC NAME" ACDLabs              12.01 "N-{(2S,3R)-4-[(4-aminobenzene-1-sulfonyl)(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}-4-methyl-3-{[(4P)-4-(pyridin-3-yl)pyrimidin-2-yl]amino}benzamide"  
Y9R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S},3~{R})-4-[(4-aminophenyl)sulfonyl-(2-methylpropyl)amino]-3-oxidanyl-1-phenyl-butan-2-yl]-4-methyl-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y9R "Create component" 2023-01-18 RCSB 
Y9R "Initial release"  2023-05-24 RCSB 
# 
