data_Y6R
# 
_chem_comp.id                                    Y6R 
_chem_comp.name                                  "(2E)-1-[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H24 F3 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        499.485 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y6R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G4P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y6R C02 C1  C 0 1 N N N N N N -12.203 9.015  49.237 -1.418 4.279  -0.025 C02 Y6R 1  
Y6R C04 C2  C 0 1 N N N N N N -14.552 9.827  49.839 -0.180 2.669  -1.531 C04 Y6R 2  
Y6R C05 C3  C 0 1 N N N N N N -13.887 10.535 51.011 -1.070 1.465  -1.555 C05 Y6R 3  
Y6R C06 C4  C 0 1 N N S N N N -11.735 11.468 49.906 -3.173 2.954  -1.293 C06 Y6R 4  
Y6R C07 C5  C 0 1 N N R N N N -13.037 11.732 50.518 -2.515 1.710  -1.847 C07 Y6R 5  
Y6R N09 N1  N 0 1 N N N N N N -11.284 12.208 52.100 -4.547 1.109  -0.693 N09 Y6R 6  
Y6R C10 C6  C 0 1 N N N N N N -10.747 11.331 51.078 -4.661 2.515  -1.149 C10 Y6R 7  
Y6R C13 C7  C 0 1 N N N N N N -10.655 12.637 53.336 -5.320 0.486  0.218  C13 Y6R 8  
Y6R C16 C8  C 0 1 Y N N N N N -8.919  10.945 54.175 -5.545 -1.512 1.692  C16 Y6R 9  
Y6R C17 C9  C 0 1 Y N N N N N -7.630  10.695 54.662 -5.396 -2.845 1.931  C17 Y6R 10 
Y6R C18 C10 C 0 1 Y N N N N N -8.381  13.294 54.009 -4.607 -1.772 -0.524 C18 Y6R 11 
Y6R C19 C11 C 0 1 Y N N N N N -7.074  13.042 54.509 -4.441 -3.138 -0.281 C19 Y6R 12 
Y6R C20 C12 C 0 1 Y N N N N N -6.700  11.773 54.832 -4.845 -3.673 0.956  C20 Y6R 13 
Y6R C24 C13 C 0 1 N N N N N N -14.205 7.796  48.433 0.718  3.357  0.610  C24 Y6R 14 
Y6R C26 C14 C 0 1 N N N N N N -13.290 6.808  47.748 1.821  2.418  0.406  C26 Y6R 15 
Y6R C27 C15 C 0 1 N N N N N N -13.700 6.216  46.573 2.764  2.268  1.360  C27 Y6R 16 
Y6R C28 C16 C 0 1 Y N N N N N -12.742 5.267  45.874 3.873  1.324  1.155  C28 Y6R 17 
Y6R N01 N2  N 0 1 N N N N N N -13.628 8.947  49.190 -0.276 3.435  -0.296 N01 Y6R 18 
Y6R C03 C17 C 0 1 N N N N N N -11.625 10.343 48.846 -2.680 3.437  0.033  C03 Y6R 19 
Y6R C08 C18 C 0 1 N N N N N N -12.625 12.650 51.721 -3.412 0.530  -1.443 C08 Y6R 20 
Y6R C14 C19 C 0 1 Y N N N N N -9.289  12.259 53.835 -5.153 -0.961 0.464  C14 Y6R 21 
Y6R O15 O1  O 0 1 N N N N N N -11.320 13.373 54.015 -6.156 1.114  0.839  O15 Y6R 22 
Y6R N21 N3  N 0 1 Y N N N N N -5.386  11.819 55.293 -4.572 -5.017 0.897  N21 Y6R 23 
Y6R N22 N4  N 0 1 Y N N N N N -4.981  13.123 55.237 -4.012 -5.259 -0.366 N22 Y6R 24 
Y6R N23 N5  N 0 1 Y N N N N N -6.015  13.892 54.756 -3.949 -4.156 -1.026 N23 Y6R 25 
Y6R O25 O2  O 0 1 N N N N N N -15.443 7.626  48.362 0.699  4.068  1.598  O25 Y6R 26 
Y6R C29 C20 C 0 1 Y N N N N N -11.715 5.797  45.067 4.852  1.167  2.142  C29 Y6R 27 
Y6R C30 C21 C 0 1 Y N N N N N -10.836 4.926  44.421 5.888  0.282  1.946  C30 Y6R 28 
Y6R C31 C22 C 0 1 Y N N N N N -10.993 3.538  44.585 5.962  -0.455 0.769  C31 Y6R 29 
Y6R C32 C23 C 0 1 Y N N N N N -12.030 3.016  45.390 4.992  -0.302 -0.215 C32 Y6R 30 
Y6R C33 C24 C 0 1 Y N N N N N -12.913 3.888  46.036 3.949  0.576  -0.025 C33 Y6R 31 
Y6R O34 O3  O 0 1 N N N N N N -10.134 2.685  43.949 6.986  -1.326 0.580  O34 Y6R 32 
Y6R C35 C25 C 0 1 N N N N N N -10.454 2.274  42.695 7.001  -2.051 -0.651 C35 Y6R 33 
Y6R F36 F1  F 0 1 N N N N N N -9.458  1.560  42.212 7.071  -1.152 -1.721 F36 Y6R 34 
Y6R F37 F2  F 0 1 N N N N N N -11.554 1.531  42.718 8.115  -2.897 -0.680 F37 Y6R 35 
Y6R F38 F3  F 0 1 N N N N N N -10.661 3.342  41.938 5.834  -2.814 -0.758 F38 Y6R 36 
Y6R H39 H1  H 0 1 N N N N N N -11.883 8.792  50.266 -1.276 4.784  0.931  H39 Y6R 37 
Y6R H40 H2  H 0 1 N N N N N N -11.801 8.252  48.554 -1.515 5.021  -0.817 H40 Y6R 38 
Y6R H44 H3  H 0 1 N N N N N N -14.904 10.578 49.116 0.852  2.343  -1.660 H44 Y6R 39 
Y6R H43 H4  H 0 1 N N N N N N -15.408 9.243  50.208 -0.446 3.316  -2.366 H43 Y6R 40 
Y6R H45 H5  H 0 1 N N N N N N -14.663 10.902 51.698 -0.686 0.775  -2.307 H45 Y6R 41 
Y6R H46 H6  H 0 1 N N N N N N -13.236 9.824  51.540 -1.001 0.974  -0.584 H46 Y6R 42 
Y6R H11 H7  H 0 1 N N N N N N -11.445 12.392 49.383 -3.099 3.763  -2.020 H11 Y6R 43 
Y6R H12 H8  H 0 1 N N N N N N -13.651 12.330 49.828 -2.604 1.777  -2.932 H12 Y6R 44 
Y6R H49 H9  H 0 1 N N N N N N -10.709 10.292 51.436 -5.173 3.123  -0.403 H49 Y6R 45 
Y6R H50 H10 H 0 1 N N N N N N -9.739  11.653 50.778 -5.174 2.569  -2.109 H50 Y6R 46 
Y6R H51 H11 H 0 1 N N N N N N -9.624  10.135 54.061 -5.973 -0.875 2.453  H51 Y6R 47 
Y6R H52 H12 H 0 1 N N N N N N -7.335  9.686  54.911 -5.705 -3.260 2.879  H52 Y6R 48 
Y6R H53 H13 H 0 1 N N N N N N -8.671  14.304 53.761 -4.301 -1.347 -1.469 H53 Y6R 49 
Y6R H55 H14 H 0 1 N N N N N N -12.327 6.569  48.174 1.880  1.845  -0.507 H55 Y6R 50 
Y6R H56 H15 H 0 1 N N N N N N -14.677 6.421  46.160 2.705  2.842  2.273  H56 Y6R 51 
Y6R H41 H16 H 0 1 N N N N N N -10.558 10.194 48.623 -2.486 2.569  0.665  H41 Y6R 52 
Y6R H42 H17 H 0 1 N N N N N N -12.146 10.683 47.939 -3.468 4.028  0.500  H42 Y6R 53 
Y6R H48 H18 H 0 1 N N N N N N -12.610 13.706 51.413 -3.775 0.013  -2.332 H48 Y6R 54 
Y6R H47 H19 H 0 1 N N N N N N -13.325 12.523 52.560 -2.858 -0.161 -0.808 H47 Y6R 55 
Y6R H54 H20 H 0 1 N N N N N N -4.840  11.042 55.607 -4.734 -5.672 1.594  H54 Y6R 56 
Y6R H57 H21 H 0 1 N N N N N N -11.609 6.865  44.950 4.796  1.739  3.056  H57 Y6R 57 
Y6R H58 H22 H 0 1 N N N N N N -10.042 5.315  43.801 6.645  0.160  2.707  H58 Y6R 58 
Y6R H59 H23 H 0 1 N N N N N N -12.141 1.948  45.506 5.055  -0.876 -1.127 H59 Y6R 59 
Y6R H60 H24 H 0 1 N N N N N N -13.714 3.503  46.650 3.193  0.691  -0.788 H60 Y6R 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y6R N01 C02 SING N N 1  
Y6R C02 C03 SING N N 2  
Y6R N01 C04 SING N N 3  
Y6R C04 C05 SING N N 4  
Y6R C03 C06 SING N N 5  
Y6R C05 C07 SING N N 6  
Y6R C06 C07 SING N N 7  
Y6R C07 C08 SING N N 8  
Y6R C08 N09 SING N N 9  
Y6R C06 C10 SING N N 10 
Y6R N09 C10 SING N N 11 
Y6R N09 C13 SING N N 12 
Y6R C13 C14 SING N N 13 
Y6R C13 O15 DOUB N N 14 
Y6R C14 C16 DOUB Y N 15 
Y6R C16 C17 SING Y N 16 
Y6R C14 C18 SING Y N 17 
Y6R C18 C19 DOUB Y N 18 
Y6R C17 C20 DOUB Y N 19 
Y6R C19 C20 SING Y N 20 
Y6R C20 N21 SING Y N 21 
Y6R N21 N22 SING Y N 22 
Y6R C19 N23 SING Y N 23 
Y6R N22 N23 DOUB Y N 24 
Y6R N01 C24 SING N N 25 
Y6R C24 O25 DOUB N N 26 
Y6R C24 C26 SING N N 27 
Y6R C26 C27 DOUB N E 28 
Y6R C27 C28 SING N N 29 
Y6R C28 C29 DOUB Y N 30 
Y6R C29 C30 SING Y N 31 
Y6R C30 C31 DOUB Y N 32 
Y6R C31 C32 SING Y N 33 
Y6R C28 C33 SING Y N 34 
Y6R C32 C33 DOUB Y N 35 
Y6R C31 O34 SING N N 36 
Y6R O34 C35 SING N N 37 
Y6R C35 F36 SING N N 38 
Y6R C35 F37 SING N N 39 
Y6R C35 F38 SING N N 40 
Y6R C02 H39 SING N N 41 
Y6R C02 H40 SING N N 42 
Y6R C04 H44 SING N N 43 
Y6R C04 H43 SING N N 44 
Y6R C05 H45 SING N N 45 
Y6R C05 H46 SING N N 46 
Y6R C06 H11 SING N N 47 
Y6R C07 H12 SING N N 48 
Y6R C10 H49 SING N N 49 
Y6R C10 H50 SING N N 50 
Y6R C16 H51 SING N N 51 
Y6R C17 H52 SING N N 52 
Y6R C18 H53 SING N N 53 
Y6R C26 H55 SING N N 54 
Y6R C27 H56 SING N N 55 
Y6R C03 H41 SING N N 56 
Y6R C03 H42 SING N N 57 
Y6R C08 H48 SING N N 58 
Y6R C08 H47 SING N N 59 
Y6R N21 H54 SING N N 60 
Y6R C29 H57 SING N N 61 
Y6R C30 H58 SING N N 62 
Y6R C32 H59 SING N N 63 
Y6R C33 H60 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y6R SMILES           ACDLabs              12.01 "FC(F)(F)Oc1ccc(cc1)/C=C/C(=O)N1CCC2CN(CC2CC1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                                
Y6R InChI            InChI                1.06  "InChI=1S/C25H24F3N5O3/c26-25(27,28)36-20-5-1-16(2-6-20)3-8-23(34)32-11-9-18-14-33(15-19(18)10-12-32)24(35)17-4-7-21-22(13-17)30-31-29-21/h1-8,13,18-19H,9-12,14-15H2,(H,29,30,31)" 
Y6R InChIKey         InChI                1.06  OTLINPKWWCLGCU-UHFFFAOYSA-N                                                                                                                                                         
Y6R SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)Oc1ccc(/C=C/C(=O)N2CC[C@H]3CN(C[C@H]3CC2)C(=O)c4ccc5[nH]nnc5c4)cc1"                                                                                                        
Y6R SMILES           CACTVS               3.385 "FC(F)(F)Oc1ccc(C=CC(=O)N2CC[CH]3CN(C[CH]3CC2)C(=O)c4ccc5[nH]nnc5c4)cc1"                                                                                                            
Y6R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/C(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F"                                                                                                    
Y6R SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=CC(=O)N2CCC3CN(CC3CC2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F"                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y6R "SYSTEMATIC NAME" ACDLabs              12.01 "(2E)-1-[(3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepin-6(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one"                                          
Y6R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-1-[(3~{a}~{S},8~{a}~{R})-2-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-6-yl]-3-[4-(trifluoromethyloxy)phenyl]prop-2-en-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y6R "Create component" 2023-06-12 RCSB 
Y6R "Initial release"  2024-12-18 RCSB 
# 
