data_XUR
# 
_chem_comp.id                                    XUR 
_chem_comp.name                                  "(2S,4S)-5-carbamimidamido-4-hydroxy-2-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]pentanoic acid (non-preferred name)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H22 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-12 
_chem_comp.pdbx_modified_date                    2023-04-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        419.327 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XUR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FFU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XUR C1  C1  C 0 1 Y N N -25.818 1.575  -19.466 -1.369 -2.421 2.720  C1  XUR 1  
XUR C3  C2  C 0 1 Y N N -25.506 1.133  -22.170 -2.156 -0.668 0.777  C3  XUR 2  
XUR C4  C3  C 0 1 Y N N -24.376 1.020  -21.332 -0.909 -1.290 0.649  C4  XUR 3  
XUR C5  C4  C 0 1 Y N N -24.544 1.247  -19.953 -0.513 -2.190 1.653  C5  XUR 4  
XUR C6  C5  C 0 1 N N N -23.066 0.676  -21.903 -0.032 -1.005 -0.504 C6  XUR 5  
XUR C7  C6  C 0 1 N N S -20.740 0.212  -21.829 1.986  -1.308 -1.748 C7  XUR 6  
XUR C8  C7  C 0 1 N N N -20.634 0.830  -23.229 3.313  -0.732 -1.250 C8  XUR 7  
XUR C9  C8  C 0 1 N N S -21.057 -0.084 -24.371 3.063  0.624  -0.587 C9  XUR 8  
XUR C11 C9  C 0 1 N N N -22.419 1.746  -26.582 5.135  3.035  1.392  C11 XUR 9  
XUR C12 C10 C 0 1 N N N -19.609 0.797  -21.001 2.246  -2.583 -2.508 C12 XUR 10 
XUR O2  O1  O 0 1 N N N -18.491 0.330  -20.938 1.755  -3.621 -2.132 O2  XUR 11 
XUR N   N1  N 0 1 Y N N -26.878 1.678  -20.272 -2.536 -1.814 2.793  N   XUR 12 
XUR C   C11 C 0 1 N N N -26.041 1.824  -18.004 -0.962 -3.384 3.806  C   XUR 13 
XUR O   O2  O 0 1 N N N -23.530 1.164  -19.059 0.686  -2.821 1.580  O   XUR 14 
XUR C10 C12 C 0 1 N N N -20.561 0.449  -25.706 4.368  1.143  0.020  C10 XUR 15 
XUR C13 C13 C 0 1 N N N -25.431 0.910  -23.656 -2.635 0.307  -0.268 C13 XUR 16 
XUR C2  C14 C 0 1 Y N N -26.708 1.461  -21.581 -2.943 -0.963 1.871  C2  XUR 17 
XUR N1  N2  N 0 1 N N N -22.012 0.570  -21.196 1.116  -1.591 -0.603 N1  XUR 18 
XUR N2  N3  N 0 1 N N N -21.243 1.696  -26.073 4.105  2.382  0.757  N2  XUR 19 
XUR N3  N4  N 0 1 N N N -23.046 2.846  -26.999 6.344  2.553  1.339  N3  XUR 20 
XUR N4  N5  N 0 1 N N N -23.046 0.578  -26.733 4.888  4.198  2.084  N4  XUR 21 
XUR O1  O3  O 0 1 N N N -20.529 -1.399 -24.169 2.591  1.553  -1.565 O1  XUR 22 
XUR O3  O4  O 0 1 N N N -19.989 1.864  -20.358 3.022  -2.565 -3.603 O3  XUR 23 
XUR O4  O5  O 0 1 N N N -25.252 -0.504 -23.873 -3.930 0.793  0.091  O4  XUR 24 
XUR O5  O6  O 0 1 N N N -25.802 -2.700 -24.957 -5.118 1.190  -2.220 O5  XUR 25 
XUR O6  O7  O 0 1 N N N -27.630 -1.270 -24.010 -6.099 2.273  -0.035 O6  XUR 26 
XUR O7  O8  O 0 1 N N N -26.489 -0.533 -26.052 -3.913 3.057  -1.024 O7  XUR 27 
XUR P   P1  P 0 1 N N N -26.305 -1.321 -24.757 -4.747 1.855  -0.802 P   XUR 28 
XUR H1  H1  H 0 1 N N N -22.994 0.506  -22.967 -0.351 -0.308 -1.265 H1  XUR 29 
XUR H2  H2  H 0 1 N N N -20.631 -0.881 -21.895 1.500  -0.586 -2.404 H2  XUR 30 
XUR H3  H3  H 0 1 N N N -19.586 1.121  -23.395 3.757  -1.414 -0.525 H3  XUR 31 
XUR H4  H4  H 0 1 N N N -21.272 1.726  -23.255 3.993  -0.604 -2.093 H4  XUR 32 
XUR H5  H5  H 0 1 N N N -22.156 -0.125 -24.397 2.316  0.513  0.199  H5  XUR 33 
XUR H6  H6  H 0 1 N N N -27.100 2.063  -17.830 -0.426 -2.845 4.587  H6  XUR 34 
XUR H7  H7  H 0 1 N N N -25.770 0.923  -17.433 -1.851 -3.849 4.231  H7  XUR 35 
XUR H8  H8  H 0 1 N N N -25.416 2.668  -17.676 -0.315 -4.153 3.385  H8  XUR 36 
XUR H9  H9  H 0 1 N N N -23.859 1.353  -18.188 1.410  -2.341 2.005  H9  XUR 37 
XUR H10 H10 H 0 1 N N N -20.750 -0.305 -26.485 4.775  0.395  0.701  H10 XUR 38 
XUR H11 H11 H 0 1 N N N -19.480 0.640  -25.636 5.086  1.339  -0.776 H11 XUR 39 
XUR H12 H12 H 0 1 N N N -24.580 1.465  -24.077 -1.938 1.143  -0.332 H12 XUR 40 
XUR H13 H13 H 0 1 N N N -26.362 1.249  -24.134 -2.690 -0.195 -1.234 H13 XUR 41 
XUR H14 H14 H 0 1 N N N -27.573 1.549  -22.221 -3.907 -0.487 1.976  H14 XUR 42 
XUR H15 H15 H 0 1 N N N -20.762 2.558  -25.917 3.205  2.741  0.797  H15 XUR 43 
XUR H16 H16 H 0 1 N N N -22.488 3.666  -26.872 6.518  1.733  0.851  H16 XUR 44 
XUR H18 H18 H 0 1 N N N -22.596 -0.271 -26.455 3.988  4.557  2.123  H18 XUR 45 
XUR H19 H19 H 0 1 N N N -23.966 0.551  -27.124 5.614  4.659  2.532  H19 XUR 46 
XUR H20 H20 H 0 1 N N N -20.835 -1.739 -23.336 3.206  1.702  -2.296 H20 XUR 47 
XUR H21 H21 H 0 1 N N N -19.263 2.202  -19.848 3.160  -3.408 -4.057 H21 XUR 48 
XUR H22 H22 H 0 1 N N N -25.677 -2.861 -25.885 -5.665 0.395  -2.151 H22 XUR 49 
XUR H23 H23 H 0 1 N N N -28.259 -0.767 -24.514 -6.642 2.912  -0.516 H23 XUR 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XUR N3  C11 DOUB N N 1  
XUR N4  C11 SING N N 2  
XUR C11 N2  SING N N 3  
XUR N2  C10 SING N N 4  
XUR O7  P   DOUB N N 5  
XUR C10 C9  SING N N 6  
XUR O5  P   SING N N 7  
XUR P   O6  SING N N 8  
XUR P   O4  SING N N 9  
XUR C9  O1  SING N N 10 
XUR C9  C8  SING N N 11 
XUR O4  C13 SING N N 12 
XUR C13 C3  SING N N 13 
XUR C8  C7  SING N N 14 
XUR C3  C2  DOUB Y N 15 
XUR C3  C4  SING Y N 16 
XUR C6  C4  SING N N 17 
XUR C6  N1  DOUB N N 18 
XUR C7  N1  SING N N 19 
XUR C7  C12 SING N N 20 
XUR C2  N   SING Y N 21 
XUR C4  C5  DOUB Y N 22 
XUR C12 O2  DOUB N N 23 
XUR C12 O3  SING N N 24 
XUR N   C1  DOUB Y N 25 
XUR C5  C1  SING Y N 26 
XUR C5  O   SING N N 27 
XUR C1  C   SING N N 28 
XUR C6  H1  SING N N 29 
XUR C7  H2  SING N N 30 
XUR C8  H3  SING N N 31 
XUR C8  H4  SING N N 32 
XUR C9  H5  SING N N 33 
XUR C   H6  SING N N 34 
XUR C   H7  SING N N 35 
XUR C   H8  SING N N 36 
XUR O   H9  SING N N 37 
XUR C10 H10 SING N N 38 
XUR C10 H11 SING N N 39 
XUR C13 H12 SING N N 40 
XUR C13 H13 SING N N 41 
XUR C2  H14 SING N N 42 
XUR N2  H15 SING N N 43 
XUR N3  H16 SING N N 44 
XUR N4  H18 SING N N 45 
XUR N4  H19 SING N N 46 
XUR O1  H20 SING N N 47 
XUR O3  H21 SING N N 48 
XUR O5  H22 SING N N 49 
XUR O6  H23 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XUR SMILES           ACDLabs              12.01 "Oc1c(/C=N/C(CC(O)CNC(=N)N)C(=O)O)c(cnc1C)COP(=O)(O)O"                                                                                                                                     
XUR InChI            InChI                1.06  "InChI=1S/C14H22N5O8P/c1-7-12(21)10(8(3-17-7)6-27-28(24,25)26)5-18-11(13(22)23)2-9(20)4-19-14(15)16/h3,5,9,11,20-21H,2,4,6H2,1H3,(H,22,23)(H4,15,16,19)(H2,24,25,26)/b18-5+/t9-,11-/m0/s1" 
XUR InChIKey         InChI                1.06  RHWJRTHWGVRULK-IUDJVARUSA-N                                                                                                                                                                
XUR SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[C@@H](C[C@H](O)CNC(N)=N)C(O)=O)c1O"                                                                                                                            
XUR SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[CH](C[CH](O)CNC(N)=N)C(O)=O)c1O"                                                                                                                               
XUR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/NC[C@H](C[C@@H](C(=O)O)/N=C/c1c(cnc(c1O)C)COP(=O)(O)O)O"                                                                                                                      
XUR SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(CC(CNC(=N)N)O)C(=O)O)O"                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XUR "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,4S)-5-carbamimidamido-4-hydroxy-2-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]pentanoic acid (non-preferred name)" 
XUR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},4~{S})-5-carbamimidamido-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-4-oxidanyl-pentanoic acid"              
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XUR "Create component" 2022-12-12 RCSB 
XUR "Initial release"  2023-04-12 RCSB 
# 
