data_XGR
# 
_chem_comp.id                                    XGR 
_chem_comp.name                                  "[(1R,4S,6S)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-6-hydroxycyclohex-2-en-1-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H16 N5 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               DG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-11-20 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        357.259 
_chem_comp.one_letter_code                       G 
_chem_comp.three_letter_code                     XGR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3KNC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XGR P      P      P 0 1 N N N 19.180 -13.509 5.869  -5.262 -0.638 0.246  P      XGR 1  
XGR N1     N1     N 0 1 N N N 22.005 -9.662  -1.190 5.707  -0.798 0.096  N1     XGR 2  
XGR C2     C2     C 0 1 N N N 23.031 -10.553 -1.265 5.404  0.451  0.550  C2     XGR 3  
XGR N2     N2     N 0 1 N N N 23.992 -10.289 -2.182 6.421  1.277  0.958  N2     XGR 4  
XGR N3     N3     N 0 1 N N N 23.126 -11.625 -0.502 4.165  0.888  0.607  N3     XGR 5  
XGR C4     C4     C 0 1 Y N N 22.105 -11.735 0.353  3.142  0.118  0.219  C4     XGR 6  
XGR C5     C5     C 0 1 Y N N 21.039 -10.901 0.482  3.389  -1.175 -0.256 C5     XGR 7  
XGR C6     C6     C 0 1 N N N 20.952 -9.773  -0.335 4.726  -1.632 -0.312 C6     XGR 8  
XGR O6     O6     O 0 1 N N N 20.075 -8.904  -0.373 4.988  -2.750 -0.725 O6     XGR 9  
XGR N7     N7     N 0 1 Y N N 20.174 -11.359 1.469  2.190  -1.722 -0.574 N7     XGR 10 
XGR C8     C8     C 0 1 Y N N 20.747 -12.460 1.910  1.245  -0.863 -0.327 C8     XGR 11 
XGR N9     N9     N 0 1 Y N N 21.937 -12.764 1.285  1.786  0.290  0.164  N9     XGR 12 
XGR "C1'"  "C1'"  C 0 1 N N S 22.849 -13.925 1.523  1.048  1.492  0.561  "C1'"  XGR 13 
XGR "C2'"  "C2'"  C 0 1 N N N 23.781 -13.706 2.714  0.451  2.155  -0.682 "C2'"  XGR 14 
XGR "C3'"  "C3'"  C 0 1 N N S 23.048 -13.700 4.058  -0.690 1.271  -1.202 "C3'"  XGR 15 
XGR "O3'"  "O3'"  O 0 1 N N N 24.050 -13.573 5.040  -1.157 1.777  -2.454 "O3'"  XGR 16 
XGR "C4'"  "C4'"  C 0 1 N N R 22.376 -15.051 4.302  -1.828 1.298  -0.180 "C4'"  XGR 17 
XGR "C5'"  "C5'"  C 0 1 N N N 21.202 -14.989 5.274  -2.862 0.232  -0.544 "C5'"  XGR 18 
XGR "O5'"  "O5'"  O 0 1 N N N 20.564 -13.745 5.131  -3.981 0.332  0.340  "O5'"  XGR 19 
XGR "C6'"  "C6'"  C 0 1 N N N 21.905 -15.695 3.010  -1.293 1.024  1.196  "C6'"  XGR 20 
XGR "C7'"  "C7'"  C 0 1 N N N 22.106 -15.206 1.786  -0.043 1.113  1.519  "C7'"  XGR 21 
XGR OP1    OP1    O 0 1 N N N 19.555 -13.613 7.289  -6.377 -0.159 1.304  OP1    XGR 22 
XGR OP2    OP2    O 0 1 N N N 18.496 -12.322 5.300  -5.824 -0.584 -1.122 OP2    XGR 23 
XGR OP3    OP3    O 0 1 N N N 18.344 -14.793 5.478  -4.817 -2.149 0.583  OP3    XGR 24 
XGR HN1    HN1    H 0 1 N N N 22.026 -8.873  -1.804 6.632  -1.087 0.063  HN1    XGR 25 
XGR HN2    HN2    H 0 1 N N N 24.773 -10.906 -2.280 7.340  0.969  0.922  HN2    XGR 26 
XGR HN2A   HN2A   H 0 0 N N N 23.921 -9.477  -2.761 6.221  2.169  1.283  HN2A   XGR 27 
XGR H8     H8     H 0 1 N N N 20.322 -13.071 2.693  0.191  -1.036 -0.488 H8     XGR 28 
XGR "H1'"  "H1'"  H 0 1 N N N 23.428 -14.005 0.591  1.730  2.190  1.048  "H1'"  XGR 29 
XGR "H2'"  "H2'"  H 0 1 N N N 24.520 -14.521 2.728  0.063  3.139  -0.422 "H2'"  XGR 30 
XGR "H2'A" "H2'A" H 0 0 N N N 24.279 -12.733 2.588  1.219  2.251  -1.450 "H2'A" XGR 31 
XGR "H3'"  "H3'"  H 0 1 N N N 22.294 -12.899 4.079  -0.333 0.248  -1.327 "H3'"  XGR 32 
XGR "HO3'" "HO3'" H 0 0 N N N 23.650 -13.564 5.902  -0.481 1.803  -3.145 "HO3'" XGR 33 
XGR "H4'"  "H4'"  H 0 1 N N N 23.164 -15.667 4.761  -2.301 2.280  -0.192 "H4'"  XGR 34 
XGR "H5'"  "H5'"  H 0 1 N N N 20.492 -15.799 5.050  -3.195 0.384  -1.570 "H5'"  XGR 35 
XGR "H5'A" "H5'A" H 0 0 N N N 21.567 -15.103 6.305  -2.413 -0.757 -0.450 "H5'A" XGR 36 
XGR "H6'"  "H6'"  H 0 1 N N N 21.363 -16.626 3.089  -1.996 0.735  1.963  "H6'"  XGR 37 
XGR "H7'"  "H7'"  H 0 1 N N N 21.716 -15.756 0.942  0.232  0.900  2.541  "H7'"  XGR 38 
XGR HOP1   HOP1   H 0 0 N N N 19.292 -12.822 7.745  -7.179 -0.699 1.302  HOP1   XGR 39 
XGR HOP3   HOP3   H 0 0 N N N 17.587 -14.535 4.966  -4.439 -2.259 1.467  HOP3   XGR 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XGR "O5'" P      SING N N 1  
XGR OP2   P      DOUB N N 2  
XGR OP3   P      SING N N 3  
XGR P     OP1    SING N N 4  
XGR C2    N1     SING N N 5  
XGR N1    C6     SING N N 6  
XGR N1    HN1    SING N N 7  
XGR N2    C2     SING N N 8  
XGR C2    N3     DOUB N N 9  
XGR N2    HN2    SING N N 10 
XGR N2    HN2A   SING N N 11 
XGR N3    C4     SING N N 12 
XGR C4    C5     DOUB Y N 13 
XGR C4    N9     SING Y N 14 
XGR C6    C5     SING N N 15 
XGR C5    N7     SING Y N 16 
XGR O6    C6     DOUB N N 17 
XGR N7    C8     DOUB Y N 18 
XGR N9    C8     SING Y N 19 
XGR C8    H8     SING N N 20 
XGR N9    "C1'"  SING N N 21 
XGR "C1'" "C7'"  SING N N 22 
XGR "C1'" "C2'"  SING N N 23 
XGR "C1'" "H1'"  SING N N 24 
XGR "C2'" "C3'"  SING N N 25 
XGR "C2'" "H2'"  SING N N 26 
XGR "C2'" "H2'A" SING N N 27 
XGR "C3'" "C4'"  SING N N 28 
XGR "C3'" "O3'"  SING N N 29 
XGR "C3'" "H3'"  SING N N 30 
XGR "O3'" "HO3'" SING N N 31 
XGR "C6'" "C4'"  SING N N 32 
XGR "C4'" "C5'"  SING N N 33 
XGR "C4'" "H4'"  SING N N 34 
XGR "O5'" "C5'"  SING N N 35 
XGR "C5'" "H5'"  SING N N 36 
XGR "C5'" "H5'A" SING N N 37 
XGR "C7'" "C6'"  DOUB N N 38 
XGR "C6'" "H6'"  SING N N 39 
XGR "C7'" "H7'"  SING N N 40 
XGR OP1   HOP1   SING N N 41 
XGR OP3   HOP3   SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XGR SMILES_CANONICAL CACTVS               3.352 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)C=C3"                                                                                                 
XGR SMILES           CACTVS               3.352 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)C=C3"                                                                                                     
XGR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](C=C3)COP(=O)(O)O)O)N=C(NC2=O)N"                                                                                                   
XGR SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1C3CC(C(C=C3)COP(=O)(O)O)O)N=C(NC2=O)N"                                                                                                                
XGR InChI            InChI                1.03  "InChI=1S/C12H16N5O6P/c13-12-15-10-9(11(19)16-12)14-5-17(10)7-2-1-6(8(18)3-7)4-23-24(20,21)22/h1-2,5-8,18H,3-4H2,(H2,20,21,22)(H3,13,15,16,19)/t6-,7-,8+/m1/s1" 
XGR InChIKey         InChI                1.03  FOPKVDVUUHAUSX-PRJMDXOYSA-N                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XGR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(1R,4S,6S)-4-(2-azanyl-6-oxo-1H-purin-9-yl)-6-hydroxy-cyclohex-2-en-1-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XGR "Create component"     2009-11-20 RCSB 
XGR "Modify aromatic_flag" 2011-06-04 RCSB 
XGR "Modify descriptor"    2011-06-04 RCSB 
# 
