data_VTR
# 
_chem_comp.id                                    VTR 
_chem_comp.name                                  "2-[2,6-bis(bromanyl)-3,4,5-tris(oxidanyl)phenyl]carbonyl-~{N}-(2-pyrrolidin-1-ylethyl)-1-benzofuran-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H20 Br2 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-31 
_chem_comp.pdbx_modified_date                    2024-06-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        568.212 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VTR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OLV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VTR C10  C1  C  0 1 Y N N N N N -33.210 22.108 -35.263 2.318  0.262  -1.575 C10  VTR 1  
VTR C15  C2  C  0 1 N N N N N N -30.256 23.489 -34.225 7.916  0.234  0.969  C15  VTR 2  
VTR C17  C3  C  0 1 N N N N N N -28.973 22.004 -34.981 10.176 0.482  1.838  C17  VTR 3  
VTR C20  C4  C  0 1 N N N N N N -29.628 21.712 -32.759 9.807  -0.911 -0.036 C20  VTR 4  
VTR C22  C5  C  0 1 Y N N N N N -35.526 22.246 -34.429 2.898  0.048  0.763  C22  VTR 5  
VTR C24  C6  C  0 1 Y N N N N N -34.498 20.074 -34.969 0.596  0.006  0.121  C24  VTR 6  
VTR O01  O1  O  0 1 N N N N N N -27.727 16.242 -33.690 -5.599 2.268  1.818  O01  VTR 7  
VTR C02  C7  C  0 1 Y N N N N N -28.430 16.790 -34.792 -5.121 1.113  1.280  C02  VTR 8  
VTR C03  C8  C  0 1 Y N N N N N -29.842 16.821 -34.856 -4.192 1.160  0.257  C03  VTR 9  
VTR BR04 BR1 BR 0 0 N N N N N N -30.907 16.125 -33.442 -3.585 2.828  -0.394 BR04 VTR 10 
VTR C05  C9  C  0 1 Y N N N N N -30.544 17.363 -35.990 -3.702 -0.028 -0.295 C05  VTR 11 
VTR C06  C10 C  0 1 N N N N N N -32.151 17.353 -36.018 -2.711 0.018  -1.386 C06  VTR 12 
VTR C07  C11 C  0 1 Y N N N N N -32.982 18.619 -35.616 -1.276 0.048  -1.074 C07  VTR 13 
VTR C08  C12 C  0 1 Y N N N N N -32.378 19.837 -35.732 -0.279 0.189  -1.988 C08  VTR 14 
VTR C09  C13 C  0 1 Y N N N N N -33.348 20.754 -35.317 0.971  0.165  -1.229 C09  VTR 15 
VTR C11  C14 C  0 1 Y N N N N N -34.274 22.895 -34.815 3.284  0.200  -0.575 C11  VTR 16 
VTR C12  C15 C  0 1 N N N N N N -33.897 24.368 -34.808 4.716  0.294  -0.925 C12  VTR 17 
VTR N13  N1  N  0 1 N N N N N N -32.570 24.793 -34.186 5.652  0.235  0.043  N13  VTR 18 
VTR C14  C16 C  0 1 N N N N N N -31.562 23.842 -33.474 7.072  0.329  -0.304 C14  VTR 19 
VTR N16  N2  N  0 1 N N N N N N -29.941 22.329 -34.206 9.340  0.328  0.621  N16  VTR 20 
VTR C18  C17 C  0 1 N N N N N N -27.972 21.147 -34.116 11.582 0.039  1.360  C18  VTR 21 
VTR C19  C18 C  0 1 N N N N N N -28.751 20.728 -32.941 11.268 -1.130 0.399  C19  VTR 22 
VTR O21  O2  O  0 1 N N N N N N -34.607 25.178 -35.330 5.051  0.426  -2.087 O21  VTR 23 
VTR C23  C19 C  0 1 Y N N N N N -35.650 20.853 -34.500 1.580  -0.041 1.104  C23  VTR 24 
VTR O25  O3  O  0 1 Y N N N N N -34.255 18.762 -35.163 -0.749 -0.057 0.164  O25  VTR 25 
VTR O26  O4  O  0 1 N N N N N N -32.797 16.419 -36.352 -3.082 0.031  -2.545 O26  VTR 26 
VTR C27  C20 C  0 1 Y N N N N N -29.745 17.848 -36.993 -4.154 -1.260 0.190  C27  VTR 27 
VTR BR28 BR2 BR 0 0 N N N N N N -30.440 18.642 -38.616 -3.500 -2.869 -0.557 BR28 VTR 28 
VTR C29  C21 C  0 1 Y N N N N N -28.348 17.814 -36.930 -5.083 -1.299 1.213  C29  VTR 29 
VTR O30  O5  O  0 1 N N N N N N -27.610 18.345 -38.010 -5.523 -2.497 1.686  O30  VTR 30 
VTR C31  C22 C  0 1 Y N N N N N -27.697 17.276 -35.803 -5.565 -0.115 1.765  C31  VTR 31 
VTR O32  O6  O  0 1 N N N N N N -26.293 17.227 -35.703 -6.477 -0.157 2.770  O32  VTR 32 
VTR H1   H1  H  0 1 N N N N N N -32.282 22.571 -35.565 2.609  0.379  -2.608 H1   VTR 33 
VTR H2   H2  H  0 1 N N N N N N -29.438 24.069 -33.772 7.651  1.051  1.641  H2   VTR 34 
VTR H3   H3  H  0 1 N N N N N N -30.379 23.789 -35.276 7.724  -0.719 1.462  H3   VTR 35 
VTR H4   H4  H  0 1 N N N N N N -29.348 21.410 -35.828 10.191 1.521  2.167  H4   VTR 36 
VTR H5   H5  H  0 1 N N N N N N -28.471 22.906 -35.360 9.818  -0.170 2.636  H5   VTR 37 
VTR H6   H6  H  0 1 N N N N N N -29.200 22.484 -32.103 9.195  -1.755 0.283  H6   VTR 38 
VTR H7   H7  H  0 1 N N N N N N -30.551 21.318 -32.308 9.752  -0.801 -1.120 H7   VTR 39 
VTR H8   H8  H  0 1 N N N N N N -36.359 22.843 -34.088 3.653  0.001  1.535  H8   VTR 40 
VTR H9   H9  H  0 1 N N N N N N -28.347 15.932 -33.041 -6.391 2.608  1.379  H9   VTR 41 
VTR H10  H10 H  0 1 N N N N N N -31.374 20.046 -36.069 -0.388 0.295  -3.057 H10  VTR 42 
VTR H11  H11 H  0 1 N N N N N N -32.327 25.762 -34.240 5.385  0.130  0.970  H11  VTR 43 
VTR H12  H12 H  0 1 N N N N N N -32.089 22.898 -33.269 7.264  1.282  -0.797 H12  VTR 44 
VTR H13  H13 H  0 1 N N N N N N -31.277 24.317 -32.524 7.336  -0.488 -0.976 H13  VTR 45 
VTR H15  H15 H  0 1 N N N N N N -27.624 20.271 -34.682 12.083 0.850  0.832  H15  VTR 46 
VTR H16  H16 H  0 1 N N N N N N -27.107 21.754 -33.811 12.185 -0.304 2.201  H16  VTR 47 
VTR H17  H17 H  0 1 N N N N N N -29.268 19.777 -33.135 11.370 -2.083 0.916  H17  VTR 48 
VTR H18  H18 H  0 1 N N N N N N -28.100 20.619 -32.061 11.930 -1.095 -0.467 H18  VTR 49 
VTR H19  H19 H  0 1 N N N N N N -36.570 20.364 -34.217 1.300  -0.162 2.140  H19  VTR 50 
VTR H20  H20 H  0 1 N N N N N N -26.681 18.256 -37.833 -4.996 -2.848 2.417  H20  VTR 51 
VTR H21  H21 H  0 1 N N N N N N -26.048 16.832 -34.875 -6.087 -0.179 3.655  H21  VTR 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VTR BR28 C27  SING N N 1  
VTR O30  C29  SING N N 2  
VTR C27  C29  DOUB Y N 3  
VTR C27  C05  SING Y N 4  
VTR C29  C31  SING Y N 5  
VTR O26  C06  DOUB N N 6  
VTR C06  C05  SING N N 7  
VTR C06  C07  SING N N 8  
VTR C05  C03  DOUB Y N 9  
VTR C31  O32  SING N N 10 
VTR C31  C02  DOUB Y N 11 
VTR C08  C07  DOUB Y N 12 
VTR C08  C09  SING Y N 13 
VTR C07  O25  SING Y N 14 
VTR O21  C12  DOUB N N 15 
VTR C09  C10  DOUB Y N 16 
VTR C09  C24  SING Y N 17 
VTR C10  C11  SING Y N 18 
VTR O25  C24  SING Y N 19 
VTR C17  N16  SING N N 20 
VTR C17  C18  SING N N 21 
VTR C24  C23  DOUB Y N 22 
VTR C03  C02  SING Y N 23 
VTR C03  BR04 SING N N 24 
VTR C11  C12  SING N N 25 
VTR C11  C22  DOUB Y N 26 
VTR C12  N13  SING N N 27 
VTR C02  O01  SING N N 28 
VTR C23  C22  SING Y N 29 
VTR C15  N16  SING N N 30 
VTR C15  C14  SING N N 31 
VTR N16  C20  SING N N 32 
VTR N13  C14  SING N N 33 
VTR C18  C19  SING N N 34 
VTR C19  C20  SING N N 35 
VTR C10  H1   SING N N 36 
VTR C15  H2   SING N N 37 
VTR C15  H3   SING N N 38 
VTR C17  H4   SING N N 39 
VTR C17  H5   SING N N 40 
VTR C20  H6   SING N N 41 
VTR C20  H7   SING N N 42 
VTR C22  H8   SING N N 43 
VTR O01  H9   SING N N 44 
VTR C08  H10  SING N N 45 
VTR N13  H11  SING N N 46 
VTR C14  H12  SING N N 47 
VTR C14  H13  SING N N 48 
VTR C18  H15  SING N N 49 
VTR C18  H16  SING N N 50 
VTR C19  H17  SING N N 51 
VTR C19  H18  SING N N 52 
VTR C23  H19  SING N N 53 
VTR O30  H20  SING N N 54 
VTR O32  H21  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VTR InChI            InChI                1.06  "InChI=1S/C22H20Br2N2O6/c23-16-15(17(24)20(29)21(30)19(16)28)18(27)14-10-12-9-11(3-4-13(12)32-14)22(31)25-5-8-26-6-1-2-7-26/h3-4,9-10,28-30H,1-2,5-8H2,(H,25,31)" 
VTR InChIKey         InChI                1.06  IZFDDCJWJDARBQ-UHFFFAOYSA-N                                                                                                                                       
VTR SMILES_CANONICAL CACTVS               3.385 "Oc1c(O)c(Br)c(c(Br)c1O)C(=O)c2oc3ccc(cc3c2)C(=O)NCCN4CCCC4"                                                                                                      
VTR SMILES           CACTVS               3.385 "Oc1c(O)c(Br)c(c(Br)c1O)C(=O)c2oc3ccc(cc3c2)C(=O)NCCN4CCCC4"                                                                                                      
VTR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)NCCN3CCCC3)cc(o2)C(=O)c4c(c(c(c(c4Br)O)O)O)Br"                                                                                                    
VTR SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)NCCN3CCCC3)cc(o2)C(=O)c4c(c(c(c(c4Br)O)O)O)Br"                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           VTR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[2,6-bis(bromanyl)-3,4,5-tris(oxidanyl)phenyl]carbonyl-~{N}-(2-pyrrolidin-1-ylethyl)-1-benzofuran-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VTR "Create component" 2023-03-31 PDBE 
VTR "Initial release"  2024-06-19 RCSB 
# 
