data_VQR
# 
_chem_comp.id                                    VQR 
_chem_comp.name                                  "methyl (4~{S})-4-[[(2~{S})-4-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H35 N3 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        461.551 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VQR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OKB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VQR C1  C1  C 0 1 N N N N N N 12.239 -33.396 -0.174 5.935  5.062  -1.260 C1  VQR 1  
VQR C10 C2  C 0 1 N N N N N N 10.576 -26.598 -2.770 2.196  -3.017 -1.613 C10 VQR 2  
VQR C11 C3  C 0 1 N N N N N N 15.108 -27.765 0.333  0.772  -0.346 0.197  C11 VQR 3  
VQR C12 C4  C 0 1 N N S N N N 15.958 -26.978 -0.668 -0.358 0.198  1.033  C12 VQR 4  
VQR C13 C5  C 0 1 N N N N N N 17.348 -26.663 -0.105 -0.400 -0.536 2.374  C13 VQR 5  
VQR C14 C6  C 0 1 N N N N N N 18.356 -27.811 -0.112 0.869  -0.218 3.169  C14 VQR 6  
VQR C15 C7  C 0 1 N N N N N N 18.324 -28.525 -1.451 0.869  1.261  3.559  C15 VQR 7  
VQR C16 C8  C 0 1 N N N N N N 18.192 -28.801 1.034  0.907  -1.079 4.433  C16 VQR 8  
VQR C17 C9  C 0 1 N N N N N N 15.033 -24.724 -0.320 -2.696 0.760  0.636  C17 VQR 9  
VQR C18 C10 C 0 1 N N N N N N 13.712 -22.759 -0.134 -4.995 1.371  0.442  C18 VQR 10 
VQR C19 C11 C 0 1 Y N N N N N 12.232 -22.729 -0.374 -6.238 0.944  -0.296 C19 VQR 11 
VQR C2  C12 C 0 1 N N N N N N 11.818 -31.713 -1.814 4.965  2.917  -0.891 C2  VQR 12 
VQR C20 C13 C 0 1 Y N N N N N 11.620 -21.612 -0.913 -6.530 1.492  -1.531 C20 VQR 13 
VQR C21 C14 C 0 1 Y N N N N N 10.252 -21.600 -1.136 -7.671 1.102  -2.208 C21 VQR 14 
VQR C22 C15 C 0 1 Y N N N N N 9.491  -22.704 -0.828 -8.518 0.163  -1.650 C22 VQR 15 
VQR C23 C16 C 0 1 Y N N N N N 10.090 -23.821 -0.297 -8.224 -0.386 -0.415 C23 VQR 16 
VQR C24 C17 C 0 1 Y N N N N N 11.458 -23.835 -0.073 -7.082 0.001  0.259  C24 VQR 17 
VQR C3  C18 C 0 1 N N N N N N 13.006 -31.077 -1.152 3.826  1.931  -0.953 C3  VQR 18 
VQR C4  C19 C 0 1 N N N N N N 13.720 -30.069 -2.049 4.280  0.591  -0.370 C4  VQR 19 
VQR C5  C20 C 0 1 N N S N N N 13.652 -28.629 -1.537 3.125  -0.410 -0.432 C5  VQR 20 
VQR C6  C21 C 0 1 N N N N N N 12.249 -28.025 -1.594 3.614  -1.782 0.034  C6  VQR 21 
VQR C7  C22 C 0 1 N N S N N N 11.780 -27.509 -2.954 2.495  -2.810 -0.145 C7  VQR 22 
VQR C8  C23 C 0 1 N N N N N N 12.756 -26.616 -3.722 2.954  -4.202 0.349  C8  VQR 23 
VQR C9  C24 C 0 1 N N N N N N 11.829 -25.725 -4.530 2.271  -5.139 -0.672 C9  VQR 24 
VQR N1  N1  N 0 1 N N N N N N 10.657 -25.626 -3.673 2.076  -4.329 -1.880 N1  VQR 25 
VQR N2  N2  N 0 1 N N N N N N 14.130 -28.541 -0.154 2.039  0.044  0.440  N2  VQR 26 
VQR N3  N3  N 0 1 N N N N N N 15.293 -25.772 -1.123 -1.627 -0.000 0.328  N3  VQR 27 
VQR O1  O1  O 0 1 N N N N N N 11.483 -32.908 -1.308 4.795  4.167  -1.351 O1  VQR 28 
VQR O2  O2  O 0 1 N N N N N N 11.225 -31.208 -2.731 6.030  2.582  -0.429 O2  VQR 29 
VQR O3  O3  O 0 1 N N N N N N 9.683  -26.742 -1.922 2.077  -2.128 -2.430 O3  VQR 30 
VQR O4  O4  O 0 1 N N N N N N 15.346 -27.687 1.540  0.541  -1.135 -0.694 O4  VQR 31 
VQR O5  O5  O 0 1 N N N N N N 15.434 -24.588 0.822  -2.583 1.671  1.433  O5  VQR 32 
VQR O6  O6  O 0 1 N N N N N N 14.188 -23.868 -0.935 -3.888 0.511  0.062  O6  VQR 33 
VQR H1  H1  H 0 1 N N N N N N 11.853 -34.381 0.128  6.229  5.171  -0.216 H1  VQR 34 
VQR H2  H2  H 0 1 N N N N N N 13.299 -33.488 -0.452 6.766  4.651  -1.831 H2  VQR 35 
VQR H3  H3  H 0 1 N N N N N N 12.140 -32.690 0.664  5.663  6.038  -1.664 H3  VQR 36 
VQR H4  H4  H 0 1 N N N N N N 16.108 -27.630 -1.541 -0.201 1.263  1.206  H4  VQR 37 
VQR H5  H5  H 0 1 N N N N N N 17.772 -25.841 -0.700 -1.273 -0.211 2.939  H5  VQR 38 
VQR H6  H6  H 0 1 N N N N N N 17.221 -26.334 0.937  -0.459 -1.610 2.199  H6  VQR 39 
VQR H7  H7  H 0 1 N N N N N N 19.355 -27.362 -0.009 1.744  -0.432 2.556  H7  VQR 40 
VQR H8  H8  H 0 1 N N N N N N 19.053 -29.349 -1.445 0.768  1.874  2.663  H8  VQR 41 
VQR H9  H9  H 0 1 N N N N N N 17.316 -28.928 -1.627 0.034  1.460  4.231  H9  VQR 42 
VQR H10 H10 H 0 1 N N N N N N 18.580 -27.815 -2.251 1.805  1.505  4.062  H10 VQR 43 
VQR H11 H11 H 0 1 N N N N N N 18.218 -28.261 1.992  0.907  -2.133 4.155  H11 VQR 44 
VQR H12 H12 H 0 1 N N N N N N 17.228 -29.322 0.933  1.811  -0.853 4.999  H12 VQR 45 
VQR H13 H13 H 0 1 N N N N N N 19.011 -29.535 1.004  0.032  -0.865 5.046  H13 VQR 46 
VQR H14 H14 H 0 1 N N N N N N 13.930 -22.927 0.931  -4.757 2.403  0.187  H14 VQR 47 
VQR H15 H15 H 0 1 N N N N N N 14.178 -21.817 -0.459 -5.165 1.292  1.515  H15 VQR 48 
VQR H16 H16 H 0 1 N N N N N N 12.212 -20.743 -1.162 -5.869 2.226  -1.967 H16 VQR 49 
VQR H17 H17 H 0 1 N N N N N N 9.782  -20.721 -1.553 -7.900 1.530  -3.172 H17 VQR 50 
VQR H18 H18 H 0 1 N N N N N N 8.425  -22.693 -1.003 -9.409 -0.142 -2.178 H18 VQR 51 
VQR H19 H19 H 0 1 N N N N N N 9.495  -24.689 -0.054 -8.887 -1.120 0.021  H19 VQR 52 
VQR H20 H20 H 0 1 N N N N N N 11.924 -24.718 0.340  -6.851 -0.430 1.222  H20 VQR 53 
VQR H21 H21 H 0 1 N N N N N N 13.719 -31.868 -0.877 2.984  2.312  -0.375 H21 VQR 54 
VQR H22 H22 H 0 1 N N N N N N 12.665 -30.558 -0.244 3.522  1.792  -1.990 H22 VQR 55 
VQR H23 H23 H 0 1 N N N N N N 13.258 -30.104 -3.047 5.122  0.210  -0.948 H23 VQR 56 
VQR H24 H24 H 0 1 N N N N N N 14.778 -30.361 -2.124 4.585  0.731  0.667  H24 VQR 57 
VQR H25 H25 H 0 1 N N N N N N 14.307 -28.016 -2.173 2.762  -0.482 -1.457 H25 VQR 58 
VQR H26 H26 H 0 1 N N N N N N 12.220 -27.181 -0.889 4.479  -2.080 -0.558 H26 VQR 59 
VQR H27 H27 H 0 1 N N N N N N 11.539 -28.799 -1.268 3.894  -1.730 1.087  H27 VQR 60 
VQR H28 H28 H 0 1 N N N N N N 11.497 -28.363 -3.587 1.597  -2.492 0.386  H28 VQR 61 
VQR H29 H29 H 0 1 N N N N N N 13.406 -27.212 -4.380 4.039  -4.295 0.299  H29 VQR 62 
VQR H30 H30 H 0 1 N N N N N N 13.376 -26.023 -3.034 2.594  -4.396 1.359  H30 VQR 63 
VQR H31 H31 H 0 1 N N N N N N 12.279 -24.736 -4.703 2.912  -5.994 -0.887 H31 VQR 64 
VQR H32 H32 H 0 1 N N N N N N 11.577 -26.187 -5.496 1.308  -5.476 -0.289 H32 VQR 65 
VQR H33 H33 H 0 1 N N N N N N 9.978  -24.897 -3.756 1.891  -4.694 -2.760 H33 VQR 66 
VQR H34 H34 H 0 1 N N N N N N 13.670 -29.133 0.508  2.231  0.625  1.192  H34 VQR 67 
VQR H35 H35 H 0 1 N N N N N N 15.014 -25.717 -2.082 -1.698 -0.679 -0.361 H35 VQR 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VQR C9  C8  SING N N 1  
VQR C9  N1  SING N N 2  
VQR C8  C7  SING N N 3  
VQR N1  C10 SING N N 4  
VQR C7  C10 SING N N 5  
VQR C7  C6  SING N N 6  
VQR C10 O3  DOUB N N 7  
VQR O2  C2  DOUB N N 8  
VQR C4  C5  SING N N 9  
VQR C4  C3  SING N N 10 
VQR C2  O1  SING N N 11 
VQR C2  C3  SING N N 12 
VQR C6  C5  SING N N 13 
VQR C5  N2  SING N N 14 
VQR C15 C14 SING N N 15 
VQR O1  C1  SING N N 16 
VQR C21 C20 DOUB Y N 17 
VQR C21 C22 SING Y N 18 
VQR N3  C12 SING N N 19 
VQR N3  C17 SING N N 20 
VQR O6  C17 SING N N 21 
VQR O6  C18 SING N N 22 
VQR C20 C19 SING Y N 23 
VQR C22 C23 DOUB Y N 24 
VQR C12 C13 SING N N 25 
VQR C12 C11 SING N N 26 
VQR C19 C18 SING N N 27 
VQR C19 C24 DOUB Y N 28 
VQR C17 O5  DOUB N N 29 
VQR C23 C24 SING Y N 30 
VQR N2  C11 SING N N 31 
VQR C14 C13 SING N N 32 
VQR C14 C16 SING N N 33 
VQR C11 O4  DOUB N N 34 
VQR C1  H1  SING N N 35 
VQR C1  H2  SING N N 36 
VQR C1  H3  SING N N 37 
VQR C12 H4  SING N N 38 
VQR C13 H5  SING N N 39 
VQR C13 H6  SING N N 40 
VQR C14 H7  SING N N 41 
VQR C15 H8  SING N N 42 
VQR C15 H9  SING N N 43 
VQR C15 H10 SING N N 44 
VQR C16 H11 SING N N 45 
VQR C16 H12 SING N N 46 
VQR C16 H13 SING N N 47 
VQR C18 H14 SING N N 48 
VQR C18 H15 SING N N 49 
VQR C20 H16 SING N N 50 
VQR C21 H17 SING N N 51 
VQR C22 H18 SING N N 52 
VQR C23 H19 SING N N 53 
VQR C24 H20 SING N N 54 
VQR C3  H21 SING N N 55 
VQR C3  H22 SING N N 56 
VQR C4  H23 SING N N 57 
VQR C4  H24 SING N N 58 
VQR C5  H25 SING N N 59 
VQR C6  H26 SING N N 60 
VQR C6  H27 SING N N 61 
VQR C7  H28 SING N N 62 
VQR C8  H29 SING N N 63 
VQR C8  H30 SING N N 64 
VQR C9  H31 SING N N 65 
VQR C9  H32 SING N N 66 
VQR N1  H33 SING N N 67 
VQR N2  H34 SING N N 68 
VQR N3  H35 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VQR InChI            InChI                1.06  "InChI=1S/C24H35N3O6/c1-16(2)13-20(27-24(31)33-15-17-7-5-4-6-8-17)23(30)26-19(9-10-21(28)32-3)14-18-11-12-25-22(18)29/h4-8,16,18-20H,9-15H2,1-3H3,(H,25,29)(H,26,30)(H,27,31)/t18-,19-,20-/m0/s1" 
VQR InChIKey         InChI                1.06  JGJNNQJIGUGNAT-UFYCRDLUSA-N                                                                                                                                                                       
VQR SMILES_CANONICAL CACTVS               3.385 "COC(=O)CC[C@@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC(C)C)NC(=O)OCc2ccccc2"                                                                                                                             
VQR SMILES           CACTVS               3.385 "COC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC(C)C)NC(=O)OCc2ccccc2"                                                                                                                                  
VQR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](CCC(=O)OC)C[C@@H]1CCNC1=O)NC(=O)OCc2ccccc2"                                                                                                                            
VQR SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CCC(=O)OC)CC1CCNC1=O)NC(=O)OCc2ccccc2"                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           VQR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl (4~{S})-4-[[(2~{S})-4-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VQR "Create component" 2023-03-28 PDBE 
VQR "Initial release"  2024-01-17 RCSB 
VQR "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VQR 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
