data_UFR
# 
_chem_comp.id                                    UFR 
_chem_comp.name                                  
;2'-DEOXY-5-FORMYLURIDINE 5'-(DIHYDROGEN PHOSPHATE)
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H13 N2 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               DU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-10-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.192 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     UFR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1G75 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UFR O3P    O3P  O 0 1 N Y N 19.164 -1.935 23.268 -5.439 -0.029 -0.171 O3P    UFR 1  
UFR P      P    P 0 1 N N N 20.071 -1.966 24.585 -4.443 -1.054 0.213  P      UFR 2  
UFR O1P    O1P  O 0 1 N N N 21.393 -1.408 24.197 -4.014 -1.899 -1.088 O1P    UFR 3  
UFR O2P    O2P  O 0 1 N N N 19.987 -3.294 25.238 -5.086 -2.044 1.308  O2P    UFR 4  
UFR "O5'"  O5*  O 0 1 N N N 19.370 -0.905 25.533 -3.145 -0.334 0.837  "O5'"  UFR 5  
UFR "C5'"  C5*  C 0 1 N N N 19.143 0.421  25.079 -2.692 0.613  -0.132 "C5'"  UFR 6  
UFR "C4'"  C4*  C 0 1 N N R 18.266 1.149  26.065 -1.454 1.336  0.401  "C4'"  UFR 7  
UFR "O4'"  O4*  O 0 1 N N N 16.962 0.541  26.078 -0.346 0.415  0.524  "O4'"  UFR 8  
UFR "C3'"  C3*  C 0 1 N N S 18.770 1.097  27.507 -0.968 2.401  -0.607 "C3'"  UFR 9  
UFR "O3'"  O3*  O 0 1 N N N 19.204 2.403  27.879 -1.438 3.697  -0.233 "O3'"  UFR 10 
UFR "C2'"  C2*  C 0 1 N N N 17.573 0.615  28.320 0.573  2.336  -0.513 "C2'"  UFR 11 
UFR "C1'"  C1*  C 0 1 N N R 16.407 0.739  27.356 0.839  1.240  0.543  "C1'"  UFR 12 
UFR N1     N1   N 0 1 N N N 15.344 -0.258 27.532 2.018  0.453  0.175  N1     UFR 13 
UFR C2     C2   C 0 1 N N N 14.112 0.184  27.954 1.983  -0.300 -0.935 C2     UFR 14 
UFR O2     O2   O 0 1 N N N 13.894 1.343  28.234 0.972  -0.305 -1.610 O2     UFR 15 
UFR N3     N3   N 0 1 N N N 13.145 -0.787 28.039 3.031  -1.042 -1.332 N3     UFR 16 
UFR C4     C4   C 0 1 N N N 13.291 -2.130 27.761 4.169  -1.061 -0.606 C4     UFR 17 
UFR O4     O4   O 0 1 N N N 12.304 -2.868 27.817 5.120  -1.735 -0.957 O4     UFR 18 
UFR C5     C5   C 0 1 N N N 14.613 -2.515 27.360 4.234  -0.248 0.621  C5     UFR 19 
UFR C6     C6   C 0 1 N N N 15.567 -1.584 27.266 3.118  0.497  0.968  C6     UFR 20 
UFR C7     C7   C 0 1 N N N 14.898 -3.963 27.120 5.439  -0.228 1.449  C7     UFR 21 
UFR O5     O5   O 0 1 N N N 14.006 -4.807 27.207 6.406  -0.887 1.128  O5     UFR 22 
UFR HO1P   HO1P H 0 0 N N N 21.423 -1.289 23.255 -3.365 -2.554 -0.795 HO1P   UFR 23 
UFR HO2P   HO2P H 0 0 N N N 19.969 -3.973 24.574 -5.858 -2.454 0.895  HO2P   UFR 24 
UFR "H5'1" 1H5* H 0 0 N N N 20.105 0.946  24.987 -3.481 1.339  -0.328 "H5'1" UFR 25 
UFR "H5'2" 2H5* H 0 0 N N N 18.645 0.392  24.099 -2.439 0.094  -1.057 "H5'2" UFR 26 
UFR "H4'"  H4*  H 0 1 N N N 18.260 2.197  25.732 -1.671 1.799  1.364  "H4'"  UFR 27 
UFR "H3'"  H3*  H 0 1 N N N 19.627 0.426  27.665 -1.300 2.152  -1.615 "H3'"  UFR 28 
UFR "HO3'" HO3* H 0 0 N N N 19.301 2.448  28.823 -1.080 4.322  -0.878 "HO3'" UFR 29 
UFR "H2'1" 1H2* H 0 0 N N N 17.421 1.234  29.216 1.003  2.052  -1.474 "H2'1" UFR 30 
UFR "H2'2" 2H2* H 0 0 N N N 17.703 -0.410 28.697 0.976  3.293  -0.181 "H2'2" UFR 31 
UFR "H1'"  H1*  H 0 1 N N N 15.931 1.717  27.522 0.974  1.688  1.528  "H1'"  UFR 32 
UFR HN3    HN3  H 0 1 N N N 12.237 -0.488 28.334 2.968  -1.570 -2.143 HN3    UFR 33 
UFR H6     H6   H 0 1 N N N 16.559 -1.890 26.967 3.124  1.107  1.859  H6     UFR 34 
UFR H7     H7   H 0 1 N N N 15.901 -4.273 26.867 5.469  0.374  2.345  H7     UFR 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UFR O3P   P      DOUB N N 1  
UFR P     O1P    SING N N 2  
UFR P     O2P    SING N N 3  
UFR P     "O5'"  SING N N 4  
UFR O1P   HO1P   SING N N 5  
UFR O2P   HO2P   SING N N 6  
UFR "O5'" "C5'"  SING N N 7  
UFR "C5'" "C4'"  SING N N 8  
UFR "C5'" "H5'1" SING N N 9  
UFR "C5'" "H5'2" SING N N 10 
UFR "C4'" "O4'"  SING N N 11 
UFR "C4'" "C3'"  SING N N 12 
UFR "C4'" "H4'"  SING N N 13 
UFR "O4'" "C1'"  SING N N 14 
UFR "C3'" "O3'"  SING N N 15 
UFR "C3'" "C2'"  SING N N 16 
UFR "C3'" "H3'"  SING N N 17 
UFR "O3'" "HO3'" SING N N 18 
UFR "C2'" "C1'"  SING N N 19 
UFR "C2'" "H2'1" SING N N 20 
UFR "C2'" "H2'2" SING N N 21 
UFR "C1'" N1     SING N N 22 
UFR "C1'" "H1'"  SING N N 23 
UFR N1    C2     SING N N 24 
UFR N1    C6     SING N N 25 
UFR C2    O2     DOUB N N 26 
UFR C2    N3     SING N N 27 
UFR N3    C4     SING N N 28 
UFR N3    HN3    SING N N 29 
UFR C4    O4     DOUB N N 30 
UFR C4    C5     SING N N 31 
UFR C5    C6     DOUB N N 32 
UFR C5    C7     SING N N 33 
UFR C6    H6     SING N N 34 
UFR C7    O5     DOUB N N 35 
UFR C7    H7     SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UFR SMILES           ACDLabs              10.04 "O=CC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2)COP(=O)(O)O"                                                                                                  
UFR SMILES_CANONICAL CACTVS               3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(C=O)C(=O)NC2=O"                                                                                       
UFR SMILES           CACTVS               3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C=O)C(=O)NC2=O"                                                                                            
UFR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)C=O)COP(=O)(O)O)O"                                                                                        
UFR SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=C(C(=O)NC2=O)C=O)COP(=O)(O)O)O"                                                                                                     
UFR InChI            InChI                1.03  "InChI=1S/C10H13N2O9P/c13-3-5-2-12(10(16)11-9(5)15)8-1-6(14)7(21-8)4-20-22(17,18)19/h2-3,6-8,14H,1,4H2,(H,11,15,16)(H2,17,18,19)/t6-,7+,8+/m0/s1" 
UFR InChIKey         InChI                1.03  LVYWYEBCBRVIEG-XLPZGREQSA-N                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UFR "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-deoxy-5-formyluridine 5'-(dihydrogen phosphate)
;
UFR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-(5-methanoyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UFR "Create component"  2006-10-19 RCSB 
UFR "Modify descriptor" 2011-06-04 RCSB 
# 
