data_TQR
# 
_chem_comp.id                                    TQR 
_chem_comp.name                                  "4-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl]pyrimidin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H13 N3 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-29 
_chem_comp.pdbx_modified_date                    2024-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        259.282 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TQR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8J5E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TQR N1  N1  N 0 1 N N N N N N 16.181 14.044 2.625  -1.248 0.351  -0.442 N1  TQR 1  
TQR N3  N2  N 0 1 N N N N N N 19.255 11.912 0.749  -5.098 -0.610 0.505  N3  TQR 2  
TQR C4  C1  C 0 1 N N R N N N 15.152 14.769 3.379  0.147  0.674  -0.751 C4  TQR 3  
TQR C5  C2  C 0 1 N N N N N N 11.798 15.066 2.016  3.634  -1.362 -0.304 C5  TQR 4  
TQR C6  C3  C 0 1 N N N N N N 17.172 13.495 3.297  -1.534 -0.464 0.590  C6  TQR 5  
TQR C7  C4  C 0 1 N N N N N N 18.176 12.667 1.341  -3.801 -0.284 0.183  C7  TQR 6  
TQR C8  C5  C 0 1 N N N N N N 17.057 13.277 0.510  -3.536 0.582  -0.899 C8  TQR 7  
TQR C1  C6  C 0 1 N N R N N N 12.536 15.108 3.359  2.708  -0.206 -0.686 C1  TQR 8  
TQR C2  C7  C 0 1 N N S N N N 13.351 16.390 3.441  2.338  0.633  0.554  C2  TQR 9  
TQR C3  C8  C 0 1 N N R N N N 14.693 16.092 2.753  0.898  1.128  0.518  C3  TQR 10 
TQR C9  C9  C 0 1 N N N N N N 16.122 13.948 1.300  -2.250 0.883  -1.197 C9  TQR 11 
TQR N2  N3  N 0 1 N N N N N N 18.239 12.769 2.748  -2.793 -0.773 0.893  N2  TQR 12 
TQR O1  O1  O 0 1 N N N N N N 13.578 16.669 4.789  3.213  1.760  0.627  O1  TQR 13 
TQR O2  O2  O 0 1 N N N N N N 15.573 17.123 3.048  0.899  2.556  0.568  O2  TQR 14 
TQR O3  O3  O 0 1 N N N N N N 10.437 15.291 2.245  3.024  -2.140 0.728  O3  TQR 15 
TQR O4  O4  O 0 1 N N N N N N 17.218 13.607 4.658  -0.625 -0.927 1.258  O4  TQR 16 
TQR S1  S1  S 0 1 N N N N N N 13.681 13.720 3.457  1.073  -0.837 -1.245 S1  TQR 17 
TQR H1  H1  H 0 1 N N N N N N 19.965 11.514 1.330  -5.278 -1.200 1.254  H1  TQR 18 
TQR H2  H2  H 0 1 N N N N N N 19.293 11.787 -0.242 -5.833 -0.250 -0.016 H2  TQR 19 
TQR H3  H3  H 0 1 N N N N N N 15.475 14.939 4.417  0.204  1.434  -1.530 H3  TQR 20 
TQR H4  H4  H 0 1 N N N N N N 11.937 14.080 1.548  3.810  -1.991 -1.177 H4  TQR 21 
TQR H5  H5  H 0 1 N N N N N N 12.195 15.847 1.351  4.583  -0.964 0.054  H5  TQR 22 
TQR H6  H6  H 0 1 N N N N N N 16.994 13.200 -0.565 -4.345 0.992  -1.484 H6  TQR 23 
TQR H7  H7  H 0 1 N N N N N N 11.833 15.026 4.201  3.167  0.418  -1.453 H7  TQR 24 
TQR H8  H8  H 0 1 N N N N N N 12.832 17.210 2.924  2.477  0.022  1.447  H8  TQR 25 
TQR H9  H9  H 0 1 N N N N N N 14.543 15.967 1.671  0.374  0.745  1.394  H9  TQR 26 
TQR H10 H10 H 0 1 N N N N N N 15.291 14.423 0.799  -2.021 1.537  -2.025 H10 TQR 27 
TQR H11 H11 H 0 1 N N N N N N 12.751 16.854 5.218  4.147  1.528  0.723  H11 TQR 28 
TQR H12 H12 H 0 1 N N N N N N 15.264 17.928 2.648  1.353  2.922  1.340  H12 TQR 29 
TQR H13 H13 H 0 1 N N N N N N 9.968  15.267 1.419  3.557  -2.892 1.021  H13 TQR 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TQR C8 C9  DOUB N N 1  
TQR C8 C7  SING N N 2  
TQR N3 C7  SING N N 3  
TQR C9 N1  SING N N 4  
TQR C7 N2  DOUB N N 5  
TQR C5 O3  SING N N 6  
TQR C5 C1  SING N N 7  
TQR N1 C6  SING N N 8  
TQR N1 C4  SING N N 9  
TQR N2 C6  SING N N 10 
TQR C3 O2  SING N N 11 
TQR C3 C4  SING N N 12 
TQR C3 C2  SING N N 13 
TQR C6 O4  DOUB N N 14 
TQR C1 C2  SING N N 15 
TQR C1 S1  SING N N 16 
TQR C4 S1  SING N N 17 
TQR C2 O1  SING N N 18 
TQR N3 H1  SING N N 19 
TQR N3 H2  SING N N 20 
TQR C4 H3  SING N N 21 
TQR C5 H4  SING N N 22 
TQR C5 H5  SING N N 23 
TQR C8 H6  SING N N 24 
TQR C1 H7  SING N N 25 
TQR C2 H8  SING N N 26 
TQR C3 H9  SING N N 27 
TQR C9 H10 SING N N 28 
TQR O1 H11 SING N N 29 
TQR O2 H12 SING N N 30 
TQR O3 H13 SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TQR InChI            InChI                1.06  "InChI=1S/C9H13N3O4S/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1" 
TQR InChIKey         InChI                1.06  GAKJJSAXUFZQTL-XVFCMESISA-N                                                                                                 
TQR SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(C=C1)[C@@H]2S[C@H](CO)[C@@H](O)[C@H]2O"                                                                        
TQR SMILES           CACTVS               3.385 "NC1=NC(=O)N(C=C1)[CH]2S[CH](CO)[CH](O)[CH]2O"                                                                              
TQR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](S2)CO)O)O"                                                                      
TQR SMILES           "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(S2)CO)O)O"                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           TQR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TQR "Create component" 2023-04-29 PDBJ 
TQR "Initial release"  2024-04-24 RCSB 
# 
