data_SKR
# 
_chem_comp.id                                    SKR 
_chem_comp.name                                  "~{N}-[(2~{S})-2-[(1~{E},3~{R},4~{S},8~{R},9~{R},10~{R},11~{S},14~{S})-14-(methoxymethyl)-3,10-dimethyl-4,8,9-tris(oxidanyl)-6-tricyclo[9.3.0.0^{3,7}]tetradeca-1,6-dienyl]propyl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H37 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-15 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        407.544 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SKR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BZT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SKR C01  C1  C 0 1 N N N N N N 13.911 18.767 0.681  3.127  2.014  1.569  C01  SKR 1  
SKR C02  C2  C 0 1 N N S N N N 14.737 18.820 -0.553 2.846  0.736  0.776  C02  SKR 2  
SKR C03  C3  C 0 1 N N N N N N 14.255 17.719 -1.566 4.016  0.455  -0.169 C03  SKR 3  
SKR C05  C4  C 0 1 N N N N N N 11.964 16.975 -2.352 6.381  -0.110 -0.010 C05  SKR 4  
SKR C06  C5  C 0 1 N N N N N N 12.303 15.510 -2.030 7.619  -0.406 0.797  C06  SKR 5  
SKR C08  C6  C 0 1 N N N N N N 16.209 18.496 -0.269 1.586  0.910  -0.025 C08  SKR 6  
SKR C09  C7  C 0 1 N N N N N N 17.449 19.232 -0.758 0.485  0.208  0.111  C09  SKR 7  
SKR C10  C8  C 0 1 N N R N N N 18.628 18.525 -0.300 -0.512 0.652  -0.925 C10  SKR 8  
SKR C11  C9  C 0 1 N N S N N N 18.181 17.035 -0.135 -0.117 2.113  -1.244 C11  SKR 9  
SKR C13  C10 C 0 1 N N N N N N 16.723 17.210 0.352  1.403  1.976  -1.074 C13  SKR 10 
SKR C14  C11 C 0 1 N N N N N N 19.811 18.675 -1.310 -0.470 -0.144 -2.235 C14  SKR 11 
SKR C15  C12 C 0 1 N N N N N N 19.163 19.017 1.094  -1.860 0.679  -0.292 C15  SKR 12 
SKR C16  C13 C 0 1 N N N N N N 18.693 20.283 1.816  -2.551 -0.323 0.183  C16  SKR 13 
SKR C17  C14 C 0 1 N N S N N N 17.652 21.160 1.577  -2.277 -1.767 0.410  C17  SKR 14 
SKR C18  C15 C 0 1 N N N N N N 17.498 21.835 3.030  -3.586 -2.324 -0.215 C18  SKR 15 
SKR C19  C16 C 0 1 N N N N N N 19.043 22.031 3.439  -4.641 -1.436 0.459  C19  SKR 16 
SKR C20  C17 C 0 1 N N S N N N 19.545 20.772 3.148  -3.962 -0.090 0.725  C20  SKR 17 
SKR C21  C18 C 0 1 N N N N N N 21.040 20.746 2.858  -4.684 1.015  -0.049 C21  SKR 18 
SKR C23  C19 C 0 1 N N N N N N 23.062 21.194 4.011  -6.707 2.299  -0.085 C23  SKR 19 
SKR C24  C20 C 0 1 N N R N N N 17.897 22.262 0.400  -1.102 -2.603 0.040  C24  SKR 20 
SKR C25  C21 C 0 1 N N N N N N 19.363 22.426 0.004  -1.145 -3.102 -1.408 C25  SKR 21 
SKR C26  C22 C 0 1 N N R N N N 16.943 21.811 -0.700 0.266  -2.099 0.411  C26  SKR 22 
SKR C28  C23 C 0 1 N N R N N N 17.453 20.572 -1.482 0.268  -0.812 1.202  C28  SKR 23 
SKR N04  N1  N 0 1 N N N N N N 12.921 18.026 -2.138 5.220  0.168  0.615  N04  SKR 24 
SKR O07  O1  O 0 1 N N N N N N 10.917 17.241 -2.818 6.430  -0.123 -1.222 O07  SKR 25 
SKR O12  O2  O 0 1 N N N N N N 18.878 16.341 0.794  -0.649 3.014  -0.280 O12  SKR 26 
SKR O22  O3  O 0 1 N N N N N N 21.631 21.049 4.117  -5.948 1.276  0.563  O22  SKR 27 
SKR O27  O4  O 0 1 N N N N N N 16.769 22.794 -1.702 1.121  -2.011 -0.737 O27  SKR 28 
SKR O29  O5  O 0 1 N N N N N N 16.711 20.350 -2.672 -0.859 -0.558 2.025  O29  SKR 29 
SKR H012 H1  H 0 0 N N N N N N 14.253 19.540 1.385  2.294  2.214  2.242  H012 SKR 30 
SKR H011 H2  H 0 0 N N N N N N 12.857 18.946 0.424  4.041  1.888  2.149  H011 SKR 31 
SKR H013 H3  H 0 0 N N N N N N 14.011 17.776 1.147  3.247  2.850  0.880  H013 SKR 32 
SKR H021 H4  H 0 0 N N N N N N 14.658 19.810 -1.027 2.727  -0.100 1.465  H021 SKR 33 
SKR H032 H5  H 0 0 N N N N N N 14.201 16.754 -1.041 3.778  -0.404 -0.797 H032 SKR 34 
SKR H031 H6  H 0 0 N N N N N N 14.984 17.650 -2.387 4.193  1.327  -0.799 H031 SKR 35 
SKR H061 H7  H 0 0 N N N N N N 11.452 14.868 -2.302 7.678  -1.476 0.993  H061 SKR 36 
SKR H062 H8  H 0 0 N N N N N N 13.191 15.205 -2.603 8.500  -0.089 0.240  H062 SKR 37 
SKR H063 H9  H 0 0 N N N N N N 12.509 15.409 -0.954 7.574  0.134  1.743  H063 SKR 38 
SKR H111 H10 H 0 0 N N N N N N 18.184 16.543 -1.119 -0.386 2.370  -2.257 H111 SKR 39 
SKR H132 H11 H 0 0 N N N N N N 16.695 17.281 1.449  1.821  2.915  -0.723 H132 SKR 40 
SKR H131 H12 H 0 0 N N N N N N 16.109 16.358 0.024  1.860  1.668  -2.007 H131 SKR 41 
SKR H143 H13 H 0 0 N N N N N N 20.688 18.128 -0.933 -0.364 -1.206 -2.012 H143 SKR 42 
SKR H142 H14 H 0 0 N N N N N N 19.514 18.263 -2.286 -1.394 0.020  -2.789 H142 SKR 43 
SKR H141 H15 H 0 0 N N N N N N 20.064 19.740 -1.423 0.377  0.188  -2.835 H141 SKR 44 
SKR H151 H16 H 0 0 N N N N N N 19.919 18.417 1.579  -2.326 1.679  -0.191 H151 SKR 45 
SKR H171 H17 H 0 0 N N N N N N 16.720 20.622 1.348  -2.441 -1.934 1.514  H171 SKR 46 
SKR H181 H18 H 0 0 N N N N N N 16.969 22.798 2.975  -3.594 -2.163 -1.285 H181 SKR 47 
SKR H182 H19 H 0 0 N N N N N N 16.975 21.169 3.732  -3.717 -3.361 0.061  H182 SKR 48 
SKR H191 H20 H 0 0 N N N N N N 19.527 22.811 2.833  -5.491 -1.302 -0.204 H191 SKR 49 
SKR H192 H21 H 0 0 N N N N N N 19.152 22.275 4.506  -4.955 -1.886 1.398  H192 SKR 50 
SKR H201 H22 H 0 0 N N N N N N 19.325 20.063 3.959  -3.918 0.130  1.788  H201 SKR 51 
SKR H211 H23 H 0 0 N N N N N N 21.354 19.753 2.506  -4.079 1.921  -0.036 H211 SKR 52 
SKR H212 H24 H 0 0 N N N N N N 21.307 21.503 2.106  -4.838 0.695  -1.079 H212 SKR 53 
SKR H233 H25 H 0 0 N N N N N N 23.482 21.427 5.001  -7.653 2.437  0.440  H233 SKR 54 
SKR H232 H26 H 0 0 N N N N N N 23.499 20.255 3.639  -6.145 3.232  -0.073 H232 SKR 55 
SKR H231 H27 H 0 0 N N N N N N 23.297 22.010 3.312  -6.904 2.006  -1.117 H231 SKR 56 
SKR H241 H28 H 0 0 N N N N N N 17.539 23.227 0.787  -1.222 -3.561 0.644  H241 SKR 57 
SKR H251 H29 H 0 0 N N N N N N 19.945 22.753 0.878  -1.470 -2.293 -2.062 H251 SKR 58 
SKR H252 H30 H 0 0 N N N N N N 19.755 21.464 -0.358 -0.152 -3.435 -1.708 H252 SKR 59 
SKR H253 H31 H 0 0 N N N N N N 19.445 23.179 -0.793 -1.846 -3.934 -1.485 H253 SKR 60 
SKR H261 H32 H 0 0 N N N N N N 15.974 21.558 -0.244 0.739  -2.883 1.061  H261 SKR 61 
SKR H281 H33 H 0 0 N N N N N N 18.496 20.783 -1.761 1.156  -0.819 1.884  H281 SKR 62 
SKR H041 H34 H 0 0 N N N N N N 12.686 18.969 -2.376 5.181  0.178  1.584  H041 SKR 63 
SKR H121 H35 H 0 0 N N N N N N 18.551 15.450 0.836  -0.425 3.940  -0.442 H121 SKR 64 
SKR H271 H36 H 0 0 N N N N N N 16.454 23.598 -1.306 2.012  -1.691 -0.539 H271 SKR 65 
SKR H291 H37 H 0 0 N N N N N N 16.673 21.154 -3.177 -0.994 -1.215 2.722  H291 SKR 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SKR O07 C05  DOUB N N 1  
SKR O29 C28  SING N N 2  
SKR C05 N04  SING N N 3  
SKR C05 C06  SING N N 4  
SKR N04 C03  SING N N 5  
SKR O27 C26  SING N N 6  
SKR C03 C02  SING N N 7  
SKR C28 C09  SING N N 8  
SKR C28 C26  SING N N 9  
SKR C14 C10  SING N N 10 
SKR C09 C10  SING N N 11 
SKR C09 C08  DOUB N N 12 
SKR C26 C24  SING N N 13 
SKR C02 C08  SING N N 14 
SKR C02 C01  SING N N 15 
SKR C10 C11  SING N N 16 
SKR C10 C15  SING N N 17 
SKR C08 C13  SING N N 18 
SKR C11 C13  SING N N 19 
SKR C11 O12  SING N N 20 
SKR C25 C24  SING N N 21 
SKR C24 C17  SING N N 22 
SKR C15 C16  DOUB N E 23 
SKR C17 C16  SING N N 24 
SKR C17 C18  SING N N 25 
SKR C16 C20  SING N N 26 
SKR C21 C20  SING N N 27 
SKR C21 O22  SING N N 28 
SKR C18 C19  SING N N 29 
SKR C20 C19  SING N N 30 
SKR C23 O22  SING N N 31 
SKR C01 H012 SING N N 32 
SKR C01 H011 SING N N 33 
SKR C01 H013 SING N N 34 
SKR C02 H021 SING N N 35 
SKR C03 H032 SING N N 36 
SKR C03 H031 SING N N 37 
SKR C06 H061 SING N N 38 
SKR C06 H062 SING N N 39 
SKR C06 H063 SING N N 40 
SKR C11 H111 SING N N 41 
SKR C13 H132 SING N N 42 
SKR C13 H131 SING N N 43 
SKR C14 H143 SING N N 44 
SKR C14 H142 SING N N 45 
SKR C14 H141 SING N N 46 
SKR C15 H151 SING N N 47 
SKR C17 H171 SING N N 48 
SKR C18 H181 SING N N 49 
SKR C18 H182 SING N N 50 
SKR C19 H191 SING N N 51 
SKR C19 H192 SING N N 52 
SKR C20 H201 SING N N 53 
SKR C21 H211 SING N N 54 
SKR C21 H212 SING N N 55 
SKR C23 H233 SING N N 56 
SKR C23 H232 SING N N 57 
SKR C23 H231 SING N N 58 
SKR C24 H241 SING N N 59 
SKR C25 H251 SING N N 60 
SKR C25 H252 SING N N 61 
SKR C25 H253 SING N N 62 
SKR C26 H261 SING N N 63 
SKR C28 H281 SING N N 64 
SKR N04 H041 SING N N 65 
SKR O12 H121 SING N N 66 
SKR O27 H271 SING N N 67 
SKR O29 H291 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SKR InChI            InChI                1.06  "InChI=1S/C23H37NO5/c1-12(10-24-14(3)25)17-8-19(26)23(4)9-18-15(11-29-5)6-7-16(18)13(2)21(27)22(28)20(17)23/h9,12-13,15-16,19,21-22,26-28H,6-8,10-11H2,1-5H3,(H,24,25)/b18-9-/t12-,13-,15-,16+,19+,21-,22-,23+/m1/s1" 
SKR InChIKey         InChI                1.06  VGNIDQRGZSBUED-FXMNBVRKSA-N                                                                                                                                                                                           
SKR SMILES_CANONICAL CACTVS               3.385 "COC[C@H]1CC[C@H]\2[C@@H](C)[C@@H](O)[C@H](O)C3=C(C[C@H](O)[C@]3(C)\C=C1\2)[C@H](C)CNC(C)=O"                                                                                                                          
SKR SMILES           CACTVS               3.385 "COC[CH]1CC[CH]2[CH](C)[CH](O)[CH](O)C3=C(C[CH](O)[C]3(C)C=C12)[CH](C)CNC(C)=O"                                                                                                                                       
SKR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@@H]\2CC[C@@H](/C2=C/[C@]3([C@H](CC(=C3[C@H]([C@@H]1O)O)[C@H](C)CNC(=O)C)O)C)COC"                                                                                                                          
SKR SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C2CCC(C2=CC3(C(CC(=C3C(C1O)O)C(C)CNC(=O)C)O)C)COC"                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           SKR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-2-[(1~{E},3~{R},4~{S},8~{R},9~{R},10~{R},11~{S},14~{S})-14-(methoxymethyl)-3,10-dimethyl-4,8,9-tris(oxidanyl)-6-tricyclo[9.3.0.0^{3,7}]tetradeca-1,6-dienyl]propyl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SKR "Create component" 2022-12-15 PDBE 
SKR "Modify formula"   2023-05-15 PDBE 
SKR "Initial release"  2024-06-26 RCSB 
# 
