data_S9R
# 
_chem_comp.id                                    S9R 
_chem_comp.name                                  "[(E)-3-(hydroxymethyl)pent-2-enyl] phosphono hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H14 O8 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-11 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        276.118 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S9R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8IZE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S9R OAM O1  O 0 1 N N N 2.079  20.089 21.865 -4.197 0.805  1.018  OAM S9R 1  
S9R PAK P1  P 0 1 N N N 0.849  19.955 20.934 -3.548 -0.445 0.237  PAK S9R 2  
S9R OAN O2  O 0 1 N N N 0.085  18.701 21.254 -4.081 -1.819 0.886  OAN S9R 3  
S9R OAL O3  O 0 1 N N N 1.206  20.115 19.482 -3.937 -0.391 -1.190 OAL S9R 4  
S9R OAJ O4  O 0 1 N N N -0.143 21.149 21.399 -1.944 -0.380 0.359  OAJ S9R 5  
S9R PAG P2  P 0 1 N N N -0.832 22.383 20.628 -0.806 0.526  -0.330 PAG S9R 6  
S9R OAI O5  O 0 1 N N N -1.648 21.953 19.403 -1.133 0.725  -1.760 OAI S9R 7  
S9R OAH O6  O 0 1 N N N -1.604 23.101 21.699 -0.736 1.955  0.408  OAH S9R 8  
S9R OAF O7  O 0 1 N N N 0.366  23.280 20.088 0.618  -0.214 -0.204 OAF S9R 9  
S9R CAE C1  C 0 1 N N N 1.356  23.817 21.070 1.812  0.287  -0.809 CAE S9R 10 
S9R CAC C2  C 0 1 N N N 2.321  24.598 20.259 2.960  -0.639 -0.497 CAC S9R 11 
S9R CAB C3  C 0 1 N N N 2.335  26.070 20.407 4.114  -0.148 -0.119 CAB S9R 12 
S9R CAD C4  C 0 1 N N N 1.604  26.770 21.559 4.333  1.343  -0.116 CAD S9R 13 
S9R CAO C5  C 0 1 N N N 0.447  27.445 20.847 4.029  1.901  1.276  CAO S9R 14 
S9R CAA C6  C 0 1 N N N 3.321  26.936 19.591 5.221  -1.073 0.314  CAA S9R 15 
S9R OAP O8  O 0 1 N N N 4.053  26.113 18.696 4.773  -2.427 0.224  OAP S9R 16 
S9R H1  H1  H 0 1 N N N 2.856  20.252 21.343 -3.984 0.833  1.961  H1  S9R 17 
S9R H2  H2  H 0 1 N N N -0.050 18.200 20.458 -5.041 -1.925 0.848  H2  S9R 18 
S9R H3  H3  H 0 1 N N N -2.514 23.178 21.437 -0.526 1.900  1.351  H3  S9R 19 
S9R H4  H4  H 0 1 N N N 0.857  24.465 21.806 1.675  0.345  -1.889 H4  S9R 20 
S9R H5  H5  H 0 1 N N N 1.867  22.995 21.592 2.030  1.280  -0.416 H5  S9R 21 
S9R H6  H6  H 0 1 N N N 2.997  24.104 19.577 2.831  -1.708 -0.586 H6  S9R 22 
S9R H7  H7  H 0 1 N N N 1.245  26.043 22.302 5.370  1.558  -0.374 H7  S9R 23 
S9R H8  H8  H 0 1 N N N 2.253  27.508 22.052 3.672  1.809  -0.846 H8  S9R 24 
S9R H9  H9  H 0 1 N N N -0.166 27.992 21.579 2.992  1.686  1.535  H9  S9R 25 
S9R H10 H10 H 0 1 N N N 0.838  28.149 20.098 4.690  1.435  2.007  H10 S9R 26 
S9R H11 H11 H 0 1 N N N -0.171 26.684 20.348 4.187  2.979  1.278  H11 S9R 27 
S9R H12 H12 H 0 1 N N N 4.018  27.441 20.276 6.086  -0.933 -0.335 H12 S9R 28 
S9R H13 H13 H 0 1 N N N 2.759  27.689 19.019 5.500  -0.850 1.344  H13 S9R 29 
S9R H14 H14 H 0 1 N N N 4.658  26.648 18.196 5.437  -3.079 0.488  H14 S9R 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S9R OAP CAA SING N N 1  
S9R OAI PAG DOUB N N 2  
S9R OAL PAK DOUB N N 3  
S9R CAA CAB SING N N 4  
S9R OAF PAG SING N N 5  
S9R OAF CAE SING N N 6  
S9R CAC CAB DOUB N E 7  
S9R CAC CAE SING N N 8  
S9R CAB CAD SING N N 9  
S9R PAG OAJ SING N N 10 
S9R PAG OAH SING N N 11 
S9R CAO CAD SING N N 12 
S9R PAK OAN SING N N 13 
S9R PAK OAJ SING N N 14 
S9R PAK OAM SING N N 15 
S9R OAM H1  SING N N 16 
S9R OAN H2  SING N N 17 
S9R OAH H3  SING N N 18 
S9R CAE H4  SING N N 19 
S9R CAE H5  SING N N 20 
S9R CAC H6  SING N N 21 
S9R CAD H7  SING N N 22 
S9R CAD H8  SING N N 23 
S9R CAO H9  SING N N 24 
S9R CAO H10 SING N N 25 
S9R CAO H11 SING N N 26 
S9R CAA H12 SING N N 27 
S9R CAA H13 SING N N 28 
S9R OAP H14 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S9R InChI            InChI                1.06  "InChI=1S/C6H14O8P2/c1-2-6(5-7)3-4-13-16(11,12)14-15(8,9)10/h3,7H,2,4-5H2,1H3,(H,11,12)(H2,8,9,10)/b6-3+" 
S9R InChIKey         InChI                1.06  DIWVCVDIGMPHFB-ZZXKWVIFSA-N                                                                               
S9R SMILES_CANONICAL CACTVS               3.385 "CC\C(CO)=C/CO[P](O)(=O)O[P](O)(O)=O"                                                                     
S9R SMILES           CACTVS               3.385 "CCC(CO)=CCO[P](O)(=O)O[P](O)(O)=O"                                                                       
S9R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC/C(=C\COP(=O)(O)OP(=O)(O)O)/CO"                                                                        
S9R SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=CCOP(=O)(O)OP(=O)(O)O)CO"                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           S9R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(~{E})-3-(hydroxymethyl)pent-2-enyl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S9R "Create component" 2023-04-11 PDBJ 
S9R "Initial release"  2023-09-13 RCSB 
# 
