data_O5R
# 
_chem_comp.id                                    O5R 
_chem_comp.name                                  "(2~{R},3~{S},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-methyl-6-octoxy-3-oxidanyl-oxan-4-yl]oxy-6-methyl-oxane-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H48 O14" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-21 
_chem_comp.pdbx_modified_date                    2024-08-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        584.651 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O5R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Q8I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O5R CAY C1  C 0 1 N N R N N N 8.312  -11.112 5.559  4.492   -2.563 0.069  CAY O5R 1  
O5R OAX O1  O 0 1 N N N N N N 7.198  -10.887 4.674  3.470   -2.393 1.053  OAX O5R 2  
O5R CAW C2  C 0 1 N N R N N N 7.253  -11.646 3.482  3.202   -1.030 1.386  CAW O5R 3  
O5R CAU C3  C 0 1 N N R N N N 6.087  -13.666 4.147  1.517   -0.691 -0.285 CAU O5R 4  
O5R CAS C4  C 0 1 N N R N N N 6.399  -14.649 5.263  1.664   -1.844 -1.283 CAS O5R 5  
O5R CAR C5  C 0 1 N N N N N N 5.442  -16.583 6.588  0.436   -3.294 -2.907 CAR O5R 6  
O5R CAN C6  C 0 1 N N R N N N 4.356  -15.257 3.340  -0.468  0.075  -1.589 CAN O5R 7  
O5R C1  C7  C 0 1 N N R N N N 5.867  -13.629 0.691  0.725   2.869  -0.631 C1  O5R 8  
O5R C2  C8  C 0 1 N N R N N N 5.500  -12.455 -0.209 0.739   3.917  0.486  C2  O5R 9  
O5R C3  C9  C 0 1 N N S N N N 4.039  -12.534 -0.629 -0.563  3.817  1.286  C3  O5R 10 
O5R C4  C10 C 0 1 N N R N N N 3.727  -13.901 -1.217 -1.750  3.998  0.333  C4  O5R 11 
O5R C5  C11 C 0 1 N N R N N N 4.121  -14.983 -0.217 -1.668  2.947  -0.777 C5  O5R 12 
O5R C6  C12 C 0 1 N N N N N N 3.902  -16.384 -0.738 -2.816  3.159  -1.766 C6  O5R 13 
O5R CAM C13 C 0 1 N N S N N N 5.565  -14.424 2.940  0.876   0.505  -0.995 CAM O5R 14 
O5R CAQ C14 C 0 1 N N S N N N 5.171  -15.493 5.580  0.289   -2.183 -1.865 CAQ O5R 15 
O5R CAZ C15 C 0 1 N N N N N N 8.035  -10.307 6.804  4.672   -4.054 -0.227 CAZ O5R 16 
O5R CBA C16 C 0 1 N N S N N N 9.609  -10.720 4.863  5.808   -1.985 0.596  CBA O5R 17 
O5R CBC C17 C 0 1 N N S N N N 9.738  -11.475 3.548  5.603   -0.508 0.947  CBC O5R 18 
O5R CBE C18 C 0 1 N N S N N N 8.498  -11.280 2.686  4.465   -0.390 1.966  CBE O5R 19 
O5R CBG C19 C 0 1 N N N N N N 2.044  -14.812 3.488  -2.671  -0.642 -0.973 CBG O5R 20 
O5R CBH C20 C 0 1 N N N N N N 1.184  -14.701 4.729  -3.520  -1.057 0.231  CBH O5R 21 
O5R CBI C21 C 0 1 N N N N N N 0.917  -13.264 5.162  -4.937  -1.395 -0.237 CBI O5R 22 
O5R CBJ C22 C 0 1 N N N N N N 0.912  -13.063 6.672  -5.786  -1.809 0.967  CBJ O5R 23 
O5R CBK C23 C 0 1 N N N N N N 2.299  -12.911 7.275  -7.203  -2.147 0.499  CBK O5R 24 
O5R CBL C24 C 0 1 N N N N N N 2.335  -12.951 8.794  -8.052  -2.562 1.703  CBL O5R 25 
O5R CBM C25 C 0 1 N N N N N N 1.741  -11.728 9.467  -9.469  -2.900 1.235  CBM O5R 26 
O5R CBN C26 C 0 1 N N N N N N 1.675  -11.858 10.972 -10.318 -3.315 2.439  CBN O5R 27 
O5R O2  O2  O 0 1 N N N N N N 5.736  -11.232 0.479  1.850   3.678  1.351  O2  O5R 28 
O5R O3  O3  O 0 1 N N N N N N 3.755  -11.519 -1.584 -0.590  4.838  2.285  O3  O5R 29 
O5R O4  O4  O 0 1 N N N N N N 4.449  -14.088 -2.429 -1.705  5.305  -0.242 O4  O5R 30 
O5R O5  O5  O 0 1 N N N N N N 5.520  -14.863 0.085  -0.420  3.075  -1.461 O5  O5R 31 
O5R O6  O6  O 0 1 N N N N N N 3.861  -17.335 0.320  -2.809  2.110  -2.736 O6  O5R 32 
O5R OAL O7  O 0 1 N N N N N N 5.190  -13.493 1.916  0.668   1.562  -0.056 OAL O5R 33 
O5R OAO O8  O 0 1 N N N N N N 3.366  -14.388 3.796  -1.347  -0.326 -0.536 OAO O5R 34 
O5R OAP O9  O 0 1 N N N N N N 4.712  -16.149 4.380  -0.264  -1.020 -2.484 OAP O5R 35 
O5R OAT O10 O 0 1 N N N N N N 7.478  -15.494 4.879  2.546   -1.454 -2.337 OAT O5R 36 
O5R OAV O11 O 0 1 N N N N N N 7.313  -13.018 3.780  2.805   -0.321 0.210  OAV O5R 37 
O5R OBB O12 O 0 1 N N N N N N 10.720 -11.024 5.700  6.817   -2.102 -0.409 OBB O5R 38 
O5R OBD O13 O 0 1 N N N N N N 10.886 -11.019 2.843  6.806   0.022  1.506  OBD O5R 39 
O5R OBF O14 O 0 1 N N N N N N 8.414  -9.928  2.252  4.832   -1.064 3.171  OBF O5R 40 
O5R HAY H1  H 0 1 N N N N N N 8.365  -12.177 5.828  4.206   -2.043 -0.845 HAY O5R 41 
O5R HAW H2  H 0 1 N N N N N N 6.369  -11.434 2.862  2.401   -0.987 2.124  HAW O5R 42 
O5R HAU H3  H 0 1 N N N N N N 5.337  -12.937 4.487  0.884   -1.005 0.544  HAU O5R 43 
O5R HAS H4  H 0 1 N N N N N N 6.673  -14.080 6.164  2.069   -2.718 -0.773 HAS O5R 44 
O5R H63 H5  H 0 1 N N N N N N 5.797  -16.134 7.528  0.859   -4.181 -2.436 H63 O5R 45 
O5R H64 H6  H 0 1 N N N N N N 4.516  -17.146 6.777  -0.543  -3.535 -3.322 H64 O5R 46 
O5R HAR H7  H 0 1 N N N N N N 6.211  -17.264 6.194  1.096   -2.957 -3.707 HAR O5R 47 
O5R HAN H8  H 0 1 N N N N N N 4.005  -15.817 2.461  -0.910  0.911  -2.132 HAN O5R 48 
O5R H1  H9  H 0 1 N N N N N N 6.953  -13.599 0.864  1.630   2.964  -1.230 H1  O5R 49 
O5R H21 H10 H 0 1 N N N N N N 6.125  -12.501 -1.113 0.825   4.912  0.050  H21 O5R 50 
O5R H31 H11 H 0 1 N N N N N N 3.413  -12.389 0.264  -0.625  2.839  1.762  H31 O5R 51 
O5R H41 H12 H 0 1 N N N N N N 2.645  -13.969 -1.405 -2.682  3.874  0.885  H41 O5R 52 
O5R H5  H13 H 0 1 N N N N N N 3.528  -14.848 0.700  -1.743  1.951  -0.341 H5  O5R 53 
O5R H61 H14 H 0 1 N N N N N N 2.948  -16.417 -1.285 -3.764  3.151  -1.229 H61 O5R 54 
O5R H62 H15 H 0 1 N N N N N N 4.725  -16.644 -1.420 -2.691  4.119  -2.267 H62 O5R 55 
O5R HAM H16 H 0 1 N N N N N N 6.354  -15.095 2.571  1.533   0.850  -1.793 HAM O5R 56 
O5R HAQ H17 H 0 1 N N N N N N 4.381  -14.835 5.971  -0.371  -2.520 -1.066 HAQ O5R 57 
O5R HAZ H18 H 0 1 N N N N N N 8.859  -10.442 7.520  3.735   -4.466 -0.602 HAZ O5R 58 
O5R H65 H19 H 0 1 N N N N N N 7.949  -9.242  6.541  5.452   -4.183 -0.978 H65 O5R 59 
O5R H66 H20 H 0 1 N N N N N N 7.094  -10.649 7.260  4.958   -4.574 0.687  H66 O5R 60 
O5R HBA H21 H 0 1 N N N N N N 9.582  -9.641  4.649  6.115   -2.533 1.487  HBA O5R 61 
O5R HBC H22 H 0 1 N N N N N N 9.840  -12.547 3.771  5.344   0.048  0.046  HBC O5R 62 
O5R HBE H23 H 0 1 N N N N N N 8.567  -11.950 1.816  4.276   0.662  2.180  HBE O5R 63 
O5R H67 H24 H 0 1 N N N N N N 1.629  -14.174 2.694  -2.631  -1.462 -1.689 H67 O5R 64 
O5R HBG H25 H 0 1 N N N N N N 2.063  -15.857 3.146  -3.116  0.233  -1.446 HBG O5R 65 
O5R H68 H26 H 0 1 N N N N N N 0.219  -15.188 4.527  -3.075  -1.932 0.704  H68 O5R 66 
O5R HBH H27 H 0 1 N N N N N N 1.693  -15.223 5.552  -3.559  -0.237 0.947  HBH O5R 67 
O5R H69 H28 H 0 1 N N N N N N 1.699  -12.622 4.730  -5.381  -0.519 -0.710 H69 O5R 68 
O5R HBI H29 H 0 1 N N N N N N -0.065 -12.961 4.769  -4.897  -2.215 -0.953 HBI O5R 69 
O5R HBJ H30 H 0 1 N N N N N N 0.334  -12.155 6.899  -5.341  -2.685 1.440  HBJ O5R 70 
O5R H7A H31 H 0 1 N N N N N N 0.425  -13.934 7.136  -5.825  -0.989 1.684  H7A O5R 71 
O5R H7B H32 H 0 1 N N N N N N 2.930  -13.728 6.895  -7.647  -1.272 0.025  H7B O5R 72 
O5R HBK H33 H 0 1 N N N N N N 2.712  -11.946 6.947  -7.163  -2.967 -0.218 HBK O5R 73 
O5R H7C H34 H 0 1 N N N N N N 1.772  -13.835 9.128  -7.607  -3.437 2.176  H7C O5R 74 
O5R HBL H35 H 0 1 N N N N N N 3.384  -13.043 9.111  -8.091  -1.742 2.419  HBL O5R 75 
O5R H7D H36 H 0 1 N N N N N N 2.361  -10.854 9.217  -9.913  -2.025 0.761  H7D O5R 76 
O5R HBM H37 H 0 1 N N N N N N 0.721  -11.576 9.083  -9.429  -3.720 0.518  HBM O5R 77 
O5R H7E H38 H 0 1 N N N N N N 1.237  -10.944 11.401 -9.873  -4.190 2.912  H7E O5R 78 
O5R H7F H39 H 0 1 N N N N N N 1.050  -12.723 11.238 -10.357 -2.495 3.155  H7F O5R 79 
O5R HBN H40 H 0 1 N N N N N N 2.689  -12.001 11.372 -11.327 -3.555 2.105  HBN O5R 80 
O5R H22 H41 H 0 1 N N N N N N 6.648  -11.186 0.740  2.710   3.720  0.909  H22 O5R 81 
O5R H32 H42 H 0 1 N N N N N N 3.952  -10.668 -1.210 0.138   4.787  2.919  H32 O5R 82 
O5R H42 H43 H 0 1 N N N N N N 4.248  -14.944 -2.789 -1.748  6.022  0.406  H42 O5R 83 
O5R H7G H44 H 0 1 N N N N N N 3.722  -18.203 -0.039 -3.511  2.180  -3.397 H7G O5R 84 
O5R HAT H45 H 0 1 N N N N N N 7.667  -16.105 5.581  2.685   -2.138 -3.007 HAT O5R 85 
O5R HBB H46 H 0 1 N N N N N N 10.638 -10.552 6.520  6.996   -3.012 -0.683 HBB O5R 86 
O5R HBD H47 H 0 1 N N N N N N 11.659 -11.141 3.382  6.748   0.955  1.752  HBD O5R 87 
O5R HBF H48 H 0 1 N N N N N N 9.193  -9.705  1.756  4.155   -1.034 3.861  HBF O5R 88 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O5R O4  C4  SING N N 1  
O5R O3  C3  SING N N 2  
O5R C4  C3  SING N N 3  
O5R C4  C5  SING N N 4  
O5R C6  C5  SING N N 5  
O5R C6  O6  SING N N 6  
O5R C3  C2  SING N N 7  
O5R C5  O5  SING N N 8  
O5R C2  O2  SING N N 9  
O5R C2  C1  SING N N 10 
O5R O5  C1  SING N N 11 
O5R C1  OAL SING N N 12 
O5R OAL CAM SING N N 13 
O5R OBF CBE SING N N 14 
O5R CBE CAW SING N N 15 
O5R CBE CBC SING N N 16 
O5R OBD CBC SING N N 17 
O5R CAM CAN SING N N 18 
O5R CAM CAU SING N N 19 
O5R CAN OAO SING N N 20 
O5R CAN OAP SING N N 21 
O5R CAW OAV SING N N 22 
O5R CAW OAX SING N N 23 
O5R CBG OAO SING N N 24 
O5R CBG CBH SING N N 25 
O5R CBC CBA SING N N 26 
O5R OAV CAU SING N N 27 
O5R CAU CAS SING N N 28 
O5R OAP CAQ SING N N 29 
O5R OAX CAY SING N N 30 
O5R CBH CBI SING N N 31 
O5R CBA CAY SING N N 32 
O5R CBA OBB SING N N 33 
O5R OAT CAS SING N N 34 
O5R CBI CBJ SING N N 35 
O5R CAS CAQ SING N N 36 
O5R CAY CAZ SING N N 37 
O5R CAQ CAR SING N N 38 
O5R CBJ CBK SING N N 39 
O5R CBK CBL SING N N 40 
O5R CBL CBM SING N N 41 
O5R CBM CBN SING N N 42 
O5R CAY HAY SING N N 43 
O5R CAW HAW SING N N 44 
O5R CAU HAU SING N N 45 
O5R CAS HAS SING N N 46 
O5R CAR H63 SING N N 47 
O5R CAR H64 SING N N 48 
O5R CAR HAR SING N N 49 
O5R CAN HAN SING N N 50 
O5R C1  H1  SING N N 51 
O5R C2  H21 SING N N 52 
O5R C3  H31 SING N N 53 
O5R C4  H41 SING N N 54 
O5R C5  H5  SING N N 55 
O5R C6  H61 SING N N 56 
O5R C6  H62 SING N N 57 
O5R CAM HAM SING N N 58 
O5R CAQ HAQ SING N N 59 
O5R CAZ HAZ SING N N 60 
O5R CAZ H65 SING N N 61 
O5R CAZ H66 SING N N 62 
O5R CBA HBA SING N N 63 
O5R CBC HBC SING N N 64 
O5R CBE HBE SING N N 65 
O5R CBG H67 SING N N 66 
O5R CBG HBG SING N N 67 
O5R CBH H68 SING N N 68 
O5R CBH HBH SING N N 69 
O5R CBI H69 SING N N 70 
O5R CBI HBI SING N N 71 
O5R CBJ HBJ SING N N 72 
O5R CBJ H7A SING N N 73 
O5R CBK H7B SING N N 74 
O5R CBK HBK SING N N 75 
O5R CBL H7C SING N N 76 
O5R CBL HBL SING N N 77 
O5R CBM H7D SING N N 78 
O5R CBM HBM SING N N 79 
O5R CBN H7E SING N N 80 
O5R CBN H7F SING N N 81 
O5R CBN HBN SING N N 82 
O5R O2  H22 SING N N 83 
O5R O3  H32 SING N N 84 
O5R O4  H42 SING N N 85 
O5R O6  H7G SING N N 86 
O5R OAT HAT SING N N 87 
O5R OBB HBB SING N N 88 
O5R OBD HBD SING N N 89 
O5R OBF HBF SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O5R InChI            InChI                1.06  "InChI=1S/C26H48O14/c1-4-5-6-7-8-9-10-35-26-23(40-25-21(34)19(32)17(30)14(11-27)38-25)22(16(29)13(3)37-26)39-24-20(33)18(31)15(28)12(2)36-24/h12-34H,4-11H2,1-3H3/t12-,13+,14-,15-,16-,17+,18+,19+,20+,21-,22-,23+,24-,25-,26-/m1/s1" 
O5R InChIKey         InChI                1.06  OIDIMGBVRRENOK-VJYSWUEHSA-N                                                                                                                                                                                                           
O5R SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCO[C@@H]1O[C@@H](C)[C@@H](O)[C@@H](O[C@H]2O[C@H](C)[C@@H](O)[C@H](O)[C@@H]2O)[C@@H]1O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O"                                                                                                 
O5R SMILES           CACTVS               3.385 "CCCCCCCCO[CH]1O[CH](C)[CH](O)[CH](O[CH]2O[CH](C)[CH](O)[CH](O)[CH]2O)[CH]1O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O"                                                                                                                       
O5R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCO[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)C)O)O)O)O[C@@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O"                                                                                           
O5R SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCOC1C(C(C(C(O1)C)O)OC2C(C(C(C(O2)C)O)O)O)OC3C(C(C(C(O3)CO)O)O)O"                                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           O5R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-methyl-6-octoxy-3-oxidanyl-oxan-4-yl]oxy-6-methyl-oxane-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O5R "Create component" 2023-08-21 PDBE 
O5R "Initial release"  2024-08-21 RCSB 
# 
