data_JER
#

_chem_comp.id                                   JER
_chem_comp.name                                 "(2~{S})-3-[4-[5-(2-cyclopentyl-6-methoxy-pyridin-4-yl)-1,2,4-oxadiazol-3-yl]-2-ethyl-6-methyl-phenoxy]propane-1,2-diol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H31 N3 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-27
_chem_comp.pdbx_modified_date                   2021-09-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       453.531
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JER
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EVZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JER  C13  C1   C  0  1  N  N  N  105.716  111.145  69.969   -4.614   2.479   0.138  C13  JER   1  
JER  C15  C2   C  0  1  Y  N  N  106.487  113.393  74.279   -0.006   0.562   0.054  C15  JER   2  
JER  C11  C3   C  0  1  Y  N  N  106.070  112.325  72.190   -2.327   1.471   0.101  C11  JER   3  
JER  C10  C4   C  0  1  Y  N  N  105.674  113.222  73.184   -1.470   0.375   0.198  C10  JER   4  
JER  C02  C5   C  0  1  N  N  N  101.671  113.081  67.544   -8.547  -0.990  -1.475  C02  JER   5  
JER  C03  C6   C  0  1  N  N  S  101.380  111.982  68.586   -7.769  -0.575  -0.225  C03  JER   6  
JER  C04  C7   C  0  1  N  N  N  101.914  112.380  69.983   -6.289  -0.415  -0.575  C04  JER   7  
JER  C06  C8   C  0  1  Y  N  N  104.082  112.868  70.940   -4.204   0.028   0.478  C06  JER   8  
JER  C07  C9   C  0  1  Y  N  N  103.691  113.777  71.929   -3.354  -1.067   0.563  C07  JER   9  
JER  C08  C10  C  0  1  N  N  N  102.370  114.568  71.761   -3.919  -2.440   0.819  C08  JER  10  
JER  C09  C11  C  0  1  Y  N  N  104.484  113.962  73.057   -1.993  -0.896   0.430  C09  JER  11  
JER  C12  C12  C  0  1  Y  N  N  105.279  112.143  71.070   -3.687   1.295   0.241  C12  JER  12  
JER  C14  C13  C  0  1  N  N  N  106.724  111.785  69.001   -4.908   3.020   1.538  C14  JER  13  
JER  C18  C14  C  0  1  Y  N  N  108.158  113.240  75.607    2.087   0.212  -0.054  C18  JER  14  
JER  C20  C15  C  0  1  Y  N  N  109.383  112.908  76.162    3.428  -0.414  -0.064  C20  JER  15  
JER  C21  C16  C  0  1  Y  N  N  110.202  111.942  75.597    3.579  -1.790   0.121  C21  JER  16  
JER  C22  C17  C  0  1  Y  N  N  111.423  111.661  76.182    4.855  -2.335   0.104  C22  JER  17  
JER  C24  C18  C  0  1  N  N  N  111.933  109.363  76.098    6.355  -4.171   0.255  C24  JER  18  
JER  C26  C19  C  0  1  Y  N  N  111.088  113.233  77.828    5.811  -0.264  -0.268  C26  JER  19  
JER  C27  C20  C  0  1  Y  N  N  109.858  113.563  77.291    4.580   0.356  -0.265  C27  JER  20  
JER  C28  C21  C  0  1  N  N  N  111.598  113.968  79.094    7.056   0.557  -0.484  C28  JER  21  
JER  C29  C22  C  0  1  N  N  N  112.926  114.081  78.853    7.470   1.245   0.834  C29  JER  22  
JER  C30  C23  C  0  1  N  N  N  113.573  114.305  80.283    7.998   2.632   0.388  C30  JER  23  
JER  C31  C24  C  0  1  N  N  N  112.595  113.553  81.278    7.032   3.011  -0.762  C31  JER  24  
JER  C32  C25  C  0  1  N  N  N  111.460  113.269  80.583    6.778   1.680  -1.498  C32  JER  25  
JER  N16  N1   N  0  1  Y  N  N  106.214  114.152  75.293    0.614   1.695  -0.160  N16  JER  26  
JER  N19  N2   N  0  1  Y  N  N  107.672  112.842  74.451    0.934  -0.404   0.124  N19  JER  27  
JER  N25  N3   N  0  1  Y  N  N  111.823  112.302  77.264    5.915  -1.567  -0.083  N25  JER  28  
JER  O01  O1   O  0  1  N  N  N  100.818  112.923  66.441   -9.908  -1.253  -1.125  O01  JER  29  
JER  O05  O2   O  0  1  N  N  N  103.294  112.678  69.780   -5.545  -0.142   0.614  O05  JER  30  
JER  O17  O3   O  0  1  Y  N  N  107.271  114.060  76.145    1.812   1.514  -0.224  O17  JER  31  
JER  O23  O4   O  0  1  N  N  N  112.260  110.666  75.636    5.017  -3.670   0.283  O23  JER  32  
JER  O33  O5   O  0  1  N  N  N   99.993  111.825  68.692   -8.280   0.667   0.264  O33  JER  33  
JER  H1   H1   H  0  1  N  N  N  104.829  110.826  69.403   -4.142   3.258  -0.461  H1   JER  34  
JER  H2   H2   H  0  1  N  N  N  106.182  110.269  70.444   -5.546   2.171  -0.336  H2   JER  35  
JER  H3   H3   H  0  1  N  N  N  106.993  111.774  72.296   -1.925   2.457  -0.078  H3   JER  36  
JER  H4   H4   H  0  1  N  N  N  102.717  113.003  67.212   -8.510  -0.186  -2.210  H4   JER  37  
JER  H5   H5   H  0  1  N  N  N  101.503  114.069  67.998   -8.101  -1.890  -1.899  H5   JER  38  
JER  H6   H6   H  0  1  N  N  N  101.863  111.046  68.269   -7.881  -1.341   0.543  H6   JER  39  
JER  H7   H7   H  0  1  N  N  N  101.380  113.263  70.364   -5.922  -1.335  -1.030  H7   JER  40  
JER  H8   H8   H  0  1  N  N  N  101.799  111.547  70.693   -6.168   0.410  -1.276  H8   JER  41  
JER  H9   H9   H  0  1  N  N  N  101.542  114.000  72.210   -4.148  -2.922  -0.132  H9   JER  42  
JER  H10  H10  H  0  1  N  N  N  102.460  115.543  72.263   -3.188  -3.038   1.363  H10  JER  43  
JER  H11  H11  H  0  1  N  N  N  102.170  114.724  70.691   -4.830  -2.354   1.411  H11  JER  44  
JER  H12  H12  H  0  1  N  N  N  104.190  114.663  73.824   -1.332  -1.747   0.504  H12  JER  45  
JER  H13  H13  H  0  1  N  N  N  107.013  111.052  68.234   -5.379   2.241   2.137  H13  JER  46  
JER  H14  H14  H  0  1  N  N  N  106.264  112.659  68.517   -3.976   3.329   2.012  H14  JER  47  
JER  H15  H15  H  0  1  N  N  N  107.617  112.103  69.559   -5.578   3.877   1.463  H15  JER  48  
JER  H16  H16  H  0  1  N  N  N  109.889  111.414  74.708    2.715  -2.421   0.275  H16  JER  49  
JER  H17  H17  H  0  1  N  N  N  112.615  108.630  75.642    6.343  -5.249   0.410  H17  JER  50  
JER  H18  H18  H  0  1  N  N  N  112.034  109.326  77.193    6.807  -3.947  -0.712  H18  JER  51  
JER  H19  H19  H  0  1  N  N  N  110.897  109.124  75.817    6.937  -3.697   1.046  H19  JER  52  
JER  H20  H20  H  0  1  N  N  N  109.262  114.336  77.753    4.505   1.423  -0.417  H20  JER  53  
JER  H21  H21  H  0  1  N  N  N  111.114  114.954  79.147    7.865  -0.079  -0.843  H21  JER  54  
JER  H22  H22  H  0  1  N  N  N  113.316  113.163  78.389    6.609   1.358   1.492  H22  JER  55  
JER  H23  H23  H  0  1  N  N  N  113.130  114.939  78.196    8.258   0.678   1.329  H23  JER  56  
JER  H24  H24  H  0  1  N  N  N  114.583  113.870  80.326    7.929   3.351   1.204  H24  JER  57  
JER  H25  H25  H  0  1  N  N  N  113.625  115.377  80.524    9.022   2.556   0.023  H25  JER  58  
JER  H26  H26  H  0  1  N  N  N  113.062  112.623  81.635    6.100   3.410  -0.361  H26  JER  59  
JER  H27  H27  H  0  1  N  N  N  112.360  114.199  82.137    7.500   3.735  -1.429  H27  JER  60  
JER  H28  H28  H  0  1  N  N  N  110.585  113.678  81.110    7.452   1.589  -2.349  H28  JER  61  
JER  H29  H29  H  0  1  N  N  N  111.348  112.180  80.477    5.742   1.631  -1.834  H29  JER  62  
JER  H30  H30  H  0  1  N  N  N  100.999  113.601  65.801  -10.461  -1.521  -1.871  H30  JER  63  
JER  H31  H31  H  0  1  N  N  N   99.798  111.150  69.331   -8.214   1.395  -0.368  H31  JER  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JER  O01  C02  SING  N  N   1  
JER  C02  C03  SING  N  N   2  
JER  C03  O33  SING  N  N   3  
JER  C03  C04  SING  N  N   4  
JER  C14  C13  SING  N  N   5  
JER  O05  C04  SING  N  N   6  
JER  O05  C06  SING  N  N   7  
JER  C13  C12  SING  N  N   8  
JER  C06  C12  DOUB  Y  N   9  
JER  C06  C07  SING  Y  N  10  
JER  C12  C11  SING  Y  N  11  
JER  C08  C07  SING  N  N  12  
JER  C07  C09  DOUB  Y  N  13  
JER  C11  C10  DOUB  Y  N  14  
JER  C09  C10  SING  Y  N  15  
JER  C10  C15  SING  N  N  16  
JER  C15  N19  SING  Y  N  17  
JER  C15  N16  DOUB  Y  N  18  
JER  N19  C18  DOUB  Y  N  19  
JER  N16  O17  SING  Y  N  20  
JER  C21  C20  DOUB  Y  N  21  
JER  C21  C22  SING  Y  N  22  
JER  C18  O17  SING  Y  N  23  
JER  C18  C20  SING  N  N  24  
JER  O23  C24  SING  N  N  25  
JER  O23  C22  SING  N  N  26  
JER  C20  C27  SING  Y  N  27  
JER  C22  N25  DOUB  Y  N  28  
JER  N25  C26  SING  Y  N  29  
JER  C27  C26  DOUB  Y  N  30  
JER  C26  C28  SING  N  N  31  
JER  C29  C28  SING  N  N  32  
JER  C29  C30  SING  N  N  33  
JER  C28  C32  SING  N  N  34  
JER  C30  C31  SING  N  N  35  
JER  C32  C31  SING  N  N  36  
JER  C13  H1   SING  N  N  37  
JER  C13  H2   SING  N  N  38  
JER  C11  H3   SING  N  N  39  
JER  C02  H4   SING  N  N  40  
JER  C02  H5   SING  N  N  41  
JER  C03  H6   SING  N  N  42  
JER  C04  H7   SING  N  N  43  
JER  C04  H8   SING  N  N  44  
JER  C08  H9   SING  N  N  45  
JER  C08  H10  SING  N  N  46  
JER  C08  H11  SING  N  N  47  
JER  C09  H12  SING  N  N  48  
JER  C14  H13  SING  N  N  49  
JER  C14  H14  SING  N  N  50  
JER  C14  H15  SING  N  N  51  
JER  C21  H16  SING  N  N  52  
JER  C24  H17  SING  N  N  53  
JER  C24  H18  SING  N  N  54  
JER  C24  H19  SING  N  N  55  
JER  C27  H20  SING  N  N  56  
JER  C28  H21  SING  N  N  57  
JER  C29  H22  SING  N  N  58  
JER  C29  H23  SING  N  N  59  
JER  C30  H24  SING  N  N  60  
JER  C30  H25  SING  N  N  61  
JER  C31  H26  SING  N  N  62  
JER  C31  H27  SING  N  N  63  
JER  C32  H28  SING  N  N  64  
JER  C32  H29  SING  N  N  65  
JER  O01  H30  SING  N  N  66  
JER  O33  H31  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JER  InChI             InChI                 1.03   "InChI=1S/C25H31N3O5/c1-4-16-10-18(9-15(2)23(16)32-14-20(30)13-29)24-27-25(33-28-24)19-11-21(17-7-5-6-8-17)26-22(12-19)31-3/h9-12,17,20,29-30H,4-8,13-14H2,1-3H3/t20-/m0/s1"  
JER  InChIKey          InChI                 1.03   KJKKMMMRWISKRF-FQEVSTJZSA-N  
JER  SMILES_CANONICAL  CACTVS                3.385  "CCc1cc(cc(C)c1OC[C@@H](O)CO)c2noc(n2)c3cc(OC)nc(c3)C4CCCC4"  
JER  SMILES            CACTVS                3.385  "CCc1cc(cc(C)c1OC[CH](O)CO)c2noc(n2)c3cc(OC)nc(c3)C4CCCC4"  
JER  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCc1cc(cc(c1OC[C@H](CO)O)C)c2nc(on2)c3cc(nc(c3)OC)C4CCCC4"  
JER  SMILES            "OpenEye OEToolkits"  2.0.7  "CCc1cc(cc(c1OCC(CO)O)C)c2nc(on2)c3cc(nc(c3)OC)C4CCCC4"  
#
_pdbx_chem_comp_identifier.comp_id          JER
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-3-[4-[5-(2-cyclopentyl-6-methoxy-pyridin-4-yl)-1,2,4-oxadiazol-3-yl]-2-ethyl-6-methyl-phenoxy]propane-1,2-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JER  "Create component"  2021-05-27  PDBJ  
JER  "Initial release"   2021-09-29  RCSB  
##
