data_GSR
#

_chem_comp.id                                   GSR
_chem_comp.name                                 "2'-DEOXY-N2-(R)STYRENE OXIDE GUANOSINE MONOPHOSPHATE"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C18 H22 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2019-09-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       467.370
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    GSR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1AF1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GSR  P       P       P  0  1  N  N  N   4.001   8.859  14.504   0.548   0.747  -6.780  P       GSR   1  
GSR  OP1     O1P     O  0  1  N  N  N   4.977   7.821  14.901  -0.756   0.079  -6.985  OP1     GSR   2  
GSR  OP2     O2P     O  0  1  N  N  N   3.993  10.172  15.191   0.504   2.220  -7.427  OP2     GSR   3  
GSR  OP3     O3P     O  0  1  N  Y  N   4.150   9.123  12.919   1.709  -0.115  -7.488  OP3     GSR   4  
GSR  "O5'"   O5*     O  0  1  N  N  N   2.526   8.223  14.612   0.850   0.861  -5.203  "O5'"   GSR   5  
GSR  "C5'"   C5*     C  0  1  N  N  N   1.386   8.991  14.225   0.877  -0.471  -4.690  "C5'"   GSR   6  
GSR  "C4'"   C4*     C  0  1  N  N  R   0.098   8.176  14.291   1.161  -0.433  -3.187  "C4'"   GSR   7  
GSR  "O4'"   O4*     O  0  1  N  N  N   0.135   7.074  13.360   0.073   0.197  -2.475  "O4'"   GSR   8  
GSR  "C3'"   C3*     C  0  1  N  N  S  -0.114   7.600  15.687   1.196  -1.868  -2.602  "C3'"   GSR   9  
GSR  "O3'"   O3*     O  0  1  N  N  N  -1.229   8.231  16.334   2.497  -2.444  -2.737  "O3'"   GSR  10  
GSR  "C2'"   C2*     C  0  1  N  N  N  -0.363   6.123  15.484   0.854  -1.620  -1.113  "C2'"   GSR  11  
GSR  "C1'"   C1*     C  0  1  N  N  R  -0.422   5.903  13.984   0.154  -0.246  -1.110  "C1'"   GSR  12  
GSR  N9      N9      N  0  1  Y  N  N   0.307   4.680  13.583  -1.191  -0.374  -0.546  N9      GSR  13  
GSR  C8      C8      C  0  1  Y  N  N   1.638   4.439  13.492  -2.333  -0.652  -1.240  C8      GSR  14  
GSR  N7      N7      N  0  1  Y  N  N   2.006   3.263  13.099  -3.346  -0.690  -0.424  N7      GSR  15  
GSR  C5      C5      C  0  1  Y  N  N   0.774   2.631  12.901  -2.916  -0.441   0.836  C5      GSR  16  
GSR  C6      C6      C  0  1  N  N  N   0.479   1.310  12.467  -3.554  -0.357   2.096  C6      GSR  17  
GSR  O6      O6      O  0  1  N  N  N   1.263   0.412  12.155  -4.756  -0.528   2.200  O6      GSR  18  
GSR  N1      N1      N  0  1  N  N  N  -0.893   1.089  12.408  -2.796  -0.087   3.182  N1      GSR  19  
GSR  C2      C2      C  0  1  N  N  N  -1.860   2.022  12.725  -1.453   0.108   3.053  C2      GSR  20  
GSR  N2      N2      N  0  1  N  N  N  -3.133   1.643  12.622  -0.710   0.386   4.173  N2      GSR  21  
GSR  N3      N3      N  0  1  N  N  N  -1.586   3.259  13.133  -0.849   0.032   1.889  N3      GSR  22  
GSR  C4      C4      C  0  1  Y  N  N  -0.265   3.496  13.199  -1.533  -0.235   0.771  C4      GSR  23  
GSR  CA      CA      C  0  1  N  N  R  -4.209   2.621  12.968   0.735   0.593   4.060  CA      GSR  24  
GSR  CB      CB      C  0  1  N  N  N  -4.738   3.272  11.691   1.019   2.077   3.815  CB      GSR  25  
GSR  OB      OB      O  0  1  N  N  N  -5.887   4.060  11.988   0.511   2.845   4.908  OB      GSR  26  
GSR  CJ      CJ      C  0  1  Y  N  N  -5.327   1.922  13.718   1.407   0.157   5.336  CJ      GSR  27  
GSR  CO      CO      C  0  1  Y  N  N  -5.473   0.537  13.660   2.699  -0.333   5.304  CO      GSR  28  
GSR  "CO'"   "CO'"   C  0  1  Y  N  N  -6.216   2.678  14.488   0.733   0.252   6.539  "CO'"   GSR  29  
GSR  CM      CM      C  0  1  Y  N  N  -6.517  -0.089  14.371   3.315  -0.733   6.475  CM      GSR  30  
GSR  "CM'"   "CM'"   C  0  1  Y  N  N  -7.253   2.048  15.189   1.348  -0.151   7.709  "CM'"   GSR  31  
GSR  CP      CP      C  0  1  Y  N  N  -7.400   0.667  15.135   2.640  -0.643   7.677  CP      GSR  32  
GSR  HOP2    2HOP    H  0  0  N  N  N   3.366  10.838  14.936   0.321   2.107  -8.370  HOP2    GSR  33  
GSR  HOP3    3HOP    H  0  0  N  N  N   3.523   9.789  12.664   2.540   0.353  -7.332  HOP3    GSR  34  
GSR  "H5'"   1H5*    H  0  1  N  N  N   1.529   9.345  13.205   1.659  -1.039  -5.194  "H5'"   GSR  35  
GSR  "H5''"  2H5*    H  0  0  N  N  N   1.298   9.849  14.891  -0.087  -0.947  -4.865  "H5''"  GSR  36  
GSR  "H4'"   H4*     H  0  1  N  N  N  -0.744   8.822  14.041   2.099   0.084  -2.988  "H4'"   GSR  37  
GSR  "H3'"   H3*     H  0  1  N  N  N   0.792   7.740  16.281   0.442  -2.499  -3.074  "H3'"   GSR  38  
GSR  "HO3'"  *HO3    H  0  0  N  Y  N  -1.361   7.872  17.203   2.476  -3.293  -2.274  "HO3'"  GSR  39  
GSR  "H2'"   1H2*    H  0  1  N  N  N   0.454   5.547  15.917   1.763  -1.586  -0.513  "H2'"   GSR  40  
GSR  "H2''"  2H2*    H  0  0  N  N  N  -1.309   5.834  15.942   0.179  -2.392  -0.742  "H2''"  GSR  41  
GSR  "H1'"   H1*     H  0  1  N  N  N  -1.467   5.807  13.684   0.736   0.464  -0.523  "H1'"   GSR  42  
GSR  H8      H8      H  0  1  N  N  N   2.368   5.205  13.742  -2.388  -0.815  -2.306  H8      GSR  43  
GSR  H1      H1      H  0  1  N  N  N  -1.178   0.168  12.115  -3.211  -0.024   4.057  H1      GSR  44  
GSR  H2      H2      H  0  1  N  N  N  -3.368   0.709  12.314  -1.142   0.444   5.040  H2      GSR  45  
GSR  HA      HA      H  0  1  N  N  N  -3.790   3.390  13.599   1.122   0.007   3.226  HA      GSR  46  
GSR  HB1     1HB     H  0  1  N  N  N  -4.989   2.502  10.975   0.533   2.393   2.892  HB1     GSR  47  
GSR  HB2     2HB     H  0  1  N  N  N  -3.976   3.907  11.268   2.095   2.232   3.731  HB2     GSR  48  
GSR  HB      HB      H  0  1  N  N  N  -6.218   3.787  12.842   0.711   3.772   4.714  HB      GSR  49  
GSR  HO      HO      H  0  1  N  N  N  -4.783  -0.050  13.072   3.226  -0.403   4.364  HO      GSR  50  
GSR  "HO'"   "HO'"   H  0  1  N  N  N  -6.094   3.753  14.540  -0.275   0.636   6.564  "HO'"   GSR  51  
GSR  HM      HM      H  0  1  N  N  N  -6.632  -1.158  14.329   4.324  -1.117   6.450  HM      GSR  52  
GSR  "HM'"   "HM'"   H  0  1  N  N  N  -7.933   2.635  15.778   0.820  -0.081   8.649  "HM'"   GSR  53  
GSR  HP      HP      H  0  1  N  N  N  -8.196   0.187  15.684   3.121  -0.956   8.592  HP      GSR  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GSR  P      OP1     DOUB  N  N   1  
GSR  P      OP2     SING  N  N   2  
GSR  P      OP3     SING  N  N   3  
GSR  P      "O5'"   SING  N  N   4  
GSR  OP2    HOP2    SING  N  N   5  
GSR  OP3    HOP3    SING  N  N   6  
GSR  "O5'"  "C5'"   SING  N  N   7  
GSR  "C5'"  "C4'"   SING  N  N   8  
GSR  "C5'"  "H5'"   SING  N  N   9  
GSR  "C5'"  "H5''"  SING  N  N  10  
GSR  "C4'"  "O4'"   SING  N  N  11  
GSR  "C4'"  "C3'"   SING  N  N  12  
GSR  "C4'"  "H4'"   SING  N  N  13  
GSR  "O4'"  "C1'"   SING  N  N  14  
GSR  "C3'"  "O3'"   SING  N  N  15  
GSR  "C3'"  "C2'"   SING  N  N  16  
GSR  "C3'"  "H3'"   SING  N  N  17  
GSR  "O3'"  "HO3'"  SING  N  N  18  
GSR  "C2'"  "C1'"   SING  N  N  19  
GSR  "C2'"  "H2'"   SING  N  N  20  
GSR  "C2'"  "H2''"  SING  N  N  21  
GSR  "C1'"  N9      SING  N  N  22  
GSR  "C1'"  "H1'"   SING  N  N  23  
GSR  N9     C8      SING  Y  N  24  
GSR  N9     C4      SING  Y  N  25  
GSR  C8     N7      DOUB  Y  N  26  
GSR  C8     H8      SING  N  N  27  
GSR  N7     C5      SING  Y  N  28  
GSR  C5     C6      SING  N  N  29  
GSR  C5     C4      DOUB  Y  N  30  
GSR  C6     O6      DOUB  N  N  31  
GSR  C6     N1      SING  N  N  32  
GSR  N1     C2      SING  N  N  33  
GSR  N1     H1      SING  N  N  34  
GSR  C2     N2      SING  N  N  35  
GSR  C2     N3      DOUB  N  N  36  
GSR  N2     CA      SING  N  N  37  
GSR  N2     H2      SING  N  N  38  
GSR  N3     C4      SING  N  N  39  
GSR  CA     CB      SING  N  N  40  
GSR  CA     CJ      SING  N  N  41  
GSR  CA     HA      SING  N  N  42  
GSR  CB     OB      SING  N  N  43  
GSR  CB     HB1     SING  N  N  44  
GSR  CB     HB2     SING  N  N  45  
GSR  OB     HB      SING  N  N  46  
GSR  CJ     CO      DOUB  Y  N  47  
GSR  CJ     "CO'"   SING  Y  N  48  
GSR  CO     CM      SING  Y  N  49  
GSR  CO     HO      SING  N  N  50  
GSR  "CO'"  "CM'"   DOUB  Y  N  51  
GSR  "CO'"  "HO'"   SING  N  N  52  
GSR  CM     CP      DOUB  Y  N  53  
GSR  CM     HM      SING  N  N  54  
GSR  "CM'"  CP      SING  Y  N  55  
GSR  "CM'"  "HM'"   SING  N  N  56  
GSR  CP     HP      SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GSR  SMILES            ACDLabs               10.04  "O=C2c3ncn(c3N=C(NC(c1ccccc1)CO)N2)C4OC(C(O)C4)COP(=O)(O)O"  
GSR  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H](NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c4ccccc4"  
GSR  SMILES            CACTVS                3.341  "OC[CH](NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c4ccccc4"  
GSR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)[C@H](CO)NC2=Nc3c(ncn3[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O)C(=O)N2"  
GSR  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)C(CO)NC2=Nc3c(ncn3C4CC(C(O4)COP(=O)(O)O)O)C(=O)N2"  
GSR  InChI             InChI                 1.03   "InChI=1S/C18H22N5O8P/c24-7-11(10-4-2-1-3-5-10)20-18-21-16-15(17(26)22-18)19-9-23(16)14-6-12(25)13(31-14)8-30-32(27,28)29/h1-5,9,11-14,24-25H,6-8H2,(H2,27,28,29)(H2,20,21,22,26)/t11-,12-,13+,14+/m0/s1"  
GSR  InChIKey          InChI                 1.03   PJRDXCSKOSXVOB-IGQOVBAYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GSR  "SYSTEMATIC NAME"  ACDLabs               10.04  "2'-deoxy-N-[(1R)-2-hydroxy-1-phenylethyl]guanosine 5'-(dihydrogen phosphate)"  
GSR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,5R)-3-hydroxy-5-[2-[[(1R)-2-hydroxy-1-phenyl-ethyl]amino]-6-oxo-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GSR  "Create component"      1999-07-08  EBI   
GSR  "Modify descriptor"     2011-06-04  RCSB  
GSR  "Modify internal type"  2019-09-13  PDBE  
##
