data_G1R
#

_chem_comp.id                                   G1R
_chem_comp.name                                 "[(2R,3R,4R,5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5S)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N5 O15 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "GUANOSINE DIPHOSPHORIBOSE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-08-30
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       575.315
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    G1R
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2I66
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G1R  O6      O6    O  0  1  N  N  N  18.263   6.977  -27.506   5.040  -4.246  -9.358  O6      G1R   1  
G1R  C6      C6    C  0  1  Y  N  N  19.206   7.204  -26.750   4.863  -5.009  -8.417  C6      G1R   2  
G1R  N1      N1    N  0  1  Y  N  N  20.361   7.784  -27.184   4.788  -6.406  -8.507  N1      G1R   3  
G1R  C2      C2    C  0  1  Y  N  N  21.421   8.019  -26.313   4.582  -7.284  -7.417  C2      G1R   4  
G1R  N2      N2    N  0  1  N  N  N  22.467   8.588  -26.847   4.544  -8.617  -7.737  N2      G1R   5  
G1R  N3      N3    N  0  1  Y  N  N  21.341   7.698  -24.989   4.437  -6.859  -6.180  N3      G1R   6  
G1R  C4      C4    C  0  1  Y  N  N  20.180   7.125  -24.573   4.506  -5.514  -6.072  C4      G1R   7  
G1R  C5      C5    C  0  1  Y  N  N  19.110   6.870  -25.431   4.701  -4.576  -7.057  C5      G1R   8  
G1R  N7      N7    N  0  1  Y  N  N  18.118   6.300  -24.762   4.711  -3.306  -6.560  N7      G1R   9  
G1R  C8      C8    C  0  1  Y  N  N  18.544   6.175  -23.497   4.521  -3.470  -5.265  C8      G1R  10  
G1R  N9      N9    N  0  1  Y  N  N  19.787   6.680  -23.395   4.391  -4.793  -4.920  N9      G1R  11  
G1R  "C1'"   C1*   C  0  1  N  N  R  20.632   6.787  -22.220   4.171  -5.311  -3.572  "C1'"   G1R  12  
G1R  "O4'"   O4*   O  0  1  N  N  N  21.714   5.880  -22.376   3.371  -4.380  -2.820  "O4'"   G1R  13  
G1R  "C2'"   C2*   C  0  1  N  N  R  19.839   6.265  -21.030   5.449  -5.531  -2.778  "C2'"   G1R  14  
G1R  "O2'"   O2*   O  0  1  N  N  N  19.431   7.392  -20.256   5.986  -6.817  -3.029  "O2'"   G1R  15  
G1R  "C3'"   C3*   C  0  1  N  N  R  20.829   5.398  -20.261   4.937  -5.408  -1.359  "C3'"   G1R  16  
G1R  "O3'"   O3*   O  0  1  N  N  N  20.381   4.030  -20.356   5.984  -5.111  -0.458  "O3'"   G1R  17  
G1R  "C4'"   C4*   C  0  1  N  N  R  22.142   5.580  -21.025   3.890  -4.304  -1.476  "C4'"   G1R  18  
G1R  "C5'"   C5*   C  0  1  N  N  N  22.896   4.283  -21.138   4.412  -2.893  -1.236  "C5'"   G1R  19  
G1R  "O5'"   O5*   O  0  1  N  N  N  22.039   3.312  -21.756   3.343  -1.974  -1.386  "O5'"   G1R  20  
G1R  PA      PA    P  0  1  N  N  R  21.701   1.915  -21.018   3.604  -0.390  -1.188  PA      G1R  21  
G1R  O1A     O1A   O  0  1  N  N  N  20.235   1.739  -21.014   2.391   0.475  -1.374  O1A     G1R  22  
G1R  O2A     O2A   O  0  1  N  N  N  22.429   1.826  -19.727   4.824  -0.053  -2.195  O2A     G1R  23  
G1R  O3A     O3A   O  0  1  N  N  N  22.366   0.868  -22.084   4.285  -0.270   0.273  O3A     G1R  24  
G1R  PB      PB    P  0  1  N  N  R  23.862   1.112  -22.694   3.695  -0.572   1.747  PB      G1R  25  
G1R  O2B     O2B   O  0  1  N  N  N  23.780   2.099  -23.813   4.655  -0.336   2.877  O2B     G1R  26  
G1R  O1B     O1B   O  0  1  N  N  N  24.794   1.351  -21.559   2.346   0.320   1.801  O1B     G1R  27  
G1R  O5X     O5X   O  0  1  N  N  N  24.200  -0.339  -23.356   3.165  -2.089   1.566  O5X     G1R  28  
G1R  C5X     C5X   C  0  1  N  N  N  25.486  -0.979  -23.183   2.459  -2.691   2.639  C5X     G1R  29  
G1R  C4X     C4X   C  0  1  N  N  R  26.591  -0.368  -24.081   2.066  -4.105   2.236  C4X     G1R  30  
G1R  O4X     O4X   O  0  1  N  N  N  27.782  -1.180  -23.938   3.285  -4.848   1.997  O4X     G1R  31  
G1R  C1X     C1X   C  0  1  N  N  S  28.613  -0.923  -25.123   3.346  -5.959   2.906  C1X     G1R  32  
G1R  O1X     O1X   O  0  1  N  N  N  29.628   0.052  -24.819   2.892  -7.151   2.274  O1X     G1R  33  
G1R  C2X     C2X   C  0  1  N  N  R  27.649  -0.487  -26.258   2.428  -5.570   4.051  C2X     G1R  34  
G1R  O2X     O2X   O  0  1  N  N  N  28.000   0.803  -26.804   2.003  -6.671   4.823  O2X     G1R  35  
G1R  C3X     C3X   C  0  1  N  N  S  26.267  -0.446  -25.583   1.307  -4.845   3.335  C3X     G1R  36  
G1R  O3X     O3X   O  0  1  N  N  N  25.502   0.692  -26.029   0.417  -5.789   2.743  O3X     G1R  37  
G1R  HN1     HN1   H  0  1  N  N  N  20.448   8.045  -28.145   4.890  -6.820  -9.428  HN1     G1R  38  
G1R  HN21    1HN2  H  0  0  N  N  N  23.170   8.714  -26.147   4.952  -9.265  -7.104  HN21    G1R  39  
G1R  HN22    2HN2  H  0  0  N  N  N  22.552   8.856  -27.807   4.109  -8.884  -8.590  HN22    G1R  40  
G1R  H8      H8    H  0  1  N  N  N  17.979   5.738  -22.687   4.469  -2.677  -4.531  H8      G1R  41  
G1R  "H1'"   H1*   H  0  1  N  N  N  20.968   7.826  -22.084   3.597  -6.235  -3.707  "H1'"   G1R  42  
G1R  "H2'"   H2*   H  0  1  N  N  N  18.940   5.692  -21.300   6.219  -4.783  -2.997  "H2'"   G1R  43  
G1R  "HO2'"  HO2*  H  0  0  N  N  N  19.340   7.136  -19.346   6.950  -6.727  -2.983  "HO2'"  G1R  44  
G1R  "H3'"   H3*   H  0  1  N  N  N  20.930   5.657  -19.197   4.473  -6.348  -1.038  "H3'"   G1R  45  
G1R  "HO3'"  HO3*  H  0  0  N  N  N  20.283   3.791  -21.270   6.797  -5.466  -0.850  "HO3'"  G1R  46  
G1R  "H4'"   H4*   H  0  1  N  N  N  22.776   6.332  -20.531   3.064  -4.486  -0.781  "H4'"   G1R  47  
G1R  "H5'1"  1H5*  H  0  0  N  N  N  23.192   3.936  -20.137   5.194  -2.644  -1.960  "H5'1"  G1R  48  
G1R  "H5'2"  2H5*  H  0  0  N  N  N  23.803   4.426  -21.744   4.817  -2.800  -0.225  "H5'2"  G1R  49  
G1R  HO2A    HO2A  H  0  0  N  N  N  23.365   1.807  -19.891   4.631   0.073  -3.148  HO2A    G1R  50  
G1R  HO1B    HO1B  H  0  0  N  N  N  25.685   1.402  -21.885   2.420   1.286   1.954  HO1B    G1R  51  
G1R  H5X1    1H5X  H  0  0  N  N  N  25.380  -2.043  -23.441   3.103  -2.713   3.521  H5X1    G1R  52  
G1R  H5X2    2H5X  H  0  0  N  N  N  25.791  -0.832  -22.136   1.568  -2.097   2.856  H5X2    G1R  53  
G1R  H4X     H4X   H  0  1  N  N  N  26.697   0.682  -23.770   1.504  -4.075   1.297  H4X     G1R  54  
G1R  H1X     H1X   H  0  1  N  N  N  29.163  -1.818  -25.449   4.378  -6.120   3.230  H1X     G1R  55  
G1R  HO1X    HO1X  H  0  0  N  N  N  30.108   0.267  -25.610   3.666  -7.565   1.856  HO1X    G1R  56  
G1R  H2X     H2X   H  0  1  N  N  N  27.686  -1.177  -27.114   2.947  -4.862   4.708  H2X     G1R  57  
G1R  HO2X    HO2X  H  0  0  N  N  N  28.077   1.435  -26.099   1.607  -7.304   4.204  HO2X    G1R  58  
G1R  H3X     H3X   H  0  1  N  N  N  25.646  -1.320  -25.828   0.713  -4.198   3.988  H3X     G1R  59  
G1R  HO3X    HO3X  H  0  0  N  N  N  25.334   1.269  -25.293  -0.481  -5.572   3.049  HO3X    G1R  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G1R  O6     C6      DOUB  N  N   1  
G1R  C6     N1      SING  Y  N   2  
G1R  C6     C5      SING  Y  N   3  
G1R  N1     C2      SING  Y  N   4  
G1R  N1     HN1     SING  N  N   5  
G1R  C2     N2      SING  N  N   6  
G1R  C2     N3      DOUB  Y  N   7  
G1R  N2     HN21    SING  N  N   8  
G1R  N2     HN22    SING  N  N   9  
G1R  N3     C4      SING  Y  N  10  
G1R  C4     C5      DOUB  Y  N  11  
G1R  C4     N9      SING  Y  N  12  
G1R  C5     N7      SING  Y  N  13  
G1R  N7     C8      DOUB  Y  N  14  
G1R  C8     N9      SING  Y  N  15  
G1R  C8     H8      SING  N  N  16  
G1R  N9     "C1'"   SING  N  N  17  
G1R  "C1'"  "O4'"   SING  N  N  18  
G1R  "C1'"  "C2'"   SING  N  N  19  
G1R  "C1'"  "H1'"   SING  N  N  20  
G1R  "O4'"  "C4'"   SING  N  N  21  
G1R  "C2'"  "C3'"   SING  N  N  22  
G1R  "C2'"  "O2'"   SING  N  N  23  
G1R  "C2'"  "H2'"   SING  N  N  24  
G1R  "O2'"  "HO2'"  SING  N  N  25  
G1R  "C3'"  "C4'"   SING  N  N  26  
G1R  "C3'"  "O3'"   SING  N  N  27  
G1R  "C3'"  "H3'"   SING  N  N  28  
G1R  "O3'"  "HO3'"  SING  N  N  29  
G1R  "C4'"  "C5'"   SING  N  N  30  
G1R  "C4'"  "H4'"   SING  N  N  31  
G1R  "C5'"  "O5'"   SING  N  N  32  
G1R  "C5'"  "H5'1"  SING  N  N  33  
G1R  "C5'"  "H5'2"  SING  N  N  34  
G1R  "O5'"  PA      SING  N  N  35  
G1R  PA     O3A     SING  N  N  36  
G1R  PA     O1A     DOUB  N  N  37  
G1R  PA     O2A     SING  N  N  38  
G1R  O2A    HO2A    SING  N  N  39  
G1R  O3A    PB      SING  N  N  40  
G1R  PB     O2B     DOUB  N  N  41  
G1R  PB     O5X     SING  N  N  42  
G1R  PB     O1B     SING  N  N  43  
G1R  O1B    HO1B    SING  N  N  44  
G1R  O5X    C5X     SING  N  N  45  
G1R  C5X    C4X     SING  N  N  46  
G1R  C5X    H5X1    SING  N  N  47  
G1R  C5X    H5X2    SING  N  N  48  
G1R  C4X    C3X     SING  N  N  49  
G1R  C4X    O4X     SING  N  N  50  
G1R  C4X    H4X     SING  N  N  51  
G1R  O4X    C1X     SING  N  N  52  
G1R  C1X    C2X     SING  N  N  53  
G1R  C1X    O1X     SING  N  N  54  
G1R  C1X    H1X     SING  N  N  55  
G1R  O1X    HO1X    SING  N  N  56  
G1R  C2X    O2X     SING  N  N  57  
G1R  C2X    C3X     SING  N  N  58  
G1R  C2X    H2X     SING  N  N  59  
G1R  O2X    HO2X    SING  N  N  60  
G1R  C3X    O3X     SING  N  N  61  
G1R  C3X    H3X     SING  N  N  62  
G1R  O3X    HO3X    SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G1R  SMILES            ACDLabs               10.04  "O=C4NC(=Nc1c4ncn1C2OC(C(O)C2O)COP(=O)(O)OP(=O)(O)OCC3OC(O)C(O)C3O)N"  
G1R  SMILES_CANONICAL  CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]4O[C@H](O)[C@H](O)[C@@H]4O)[C@H](O)[C@H]3O"  
G1R  SMILES            CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O"  
G1R  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1[C@H]3[C@@H]([C@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@H](O4)O)O)O)O)O)N=C(NC2=O)N"  
G1R  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)O)O)O)O)O)N=C(NC2=O)N"  
G1R  InChI             InChI                 1.03   "InChI=1S/C15H23N5O15P2/c16-15-18-11-6(12(25)19-15)17-3-20(11)13-9(23)7(21)4(33-13)1-31-36(27,28)35-37(29,30)32-2-5-8(22)10(24)14(26)34-5/h3-5,7-10,13-14,21-24,26H,1-2H2,(H,27,28)(H,29,30)(H3,16,18,19,25)/t4-,5-,7+,8-,9-,10-,13-,14+/m1/s1"  
G1R  InChIKey          InChI                 1.03   JSQOXYZOPSTQIZ-NQRHNBEYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G1R  "SYSTEMATIC NAME"  ACDLabs               10.04  "[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5S)-3,4,5-trihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
G1R  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G1R  "Create component"   2006-08-30  RCSB  
G1R  "Modify descriptor"  2011-06-04  RCSB  
G1R  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     G1R
_pdbx_chem_comp_synonyms.name        "GUANOSINE DIPHOSPHORIBOSE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
