data_E9R
#

_chem_comp.id                                   E9R
_chem_comp.name                                 "(2~{S})-6-[4-(hydroxymethyl)-3-oxidanyl-pyridin-1-ium-1-yl]-2-(phenylmethoxycarbonylamino)hexanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H25 N2 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2019-11-26
_chem_comp.pdbx_modified_date                   2020-11-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       389.422
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    E9R
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6LCS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E9R  N1   N1   N  1  1  Y  N  N  -31.027  22.897  -18.078   -4.160  -0.576  -0.612  N1   E9R   1  
E9R  C2   C1   C  0  1  Y  N  N  -33.457  21.704  -17.572   -6.766  -1.025   0.094  C2   E9R   2  
E9R  C4   C2   C  0  1  Y  N  N  -31.081  21.572  -17.893   -4.421  -1.435   0.353  C4   E9R   3  
E9R  C8   C3   C  0  1  N  N  N  -27.197  27.949  -21.910    1.780   3.690   0.650  C8   E9R   4  
E9R  N2   N2   N  0  1  N  N  N  -26.973  27.246  -19.490    2.080   1.315   0.255  N2   E9R   5  
E9R  C6   C4   C  0  1  Y  N  N  -33.377  23.078  -17.762   -6.447  -0.129  -0.914  C6   E9R   6  
E9R  O6   O1   O  0  1  N  N  N  -26.767  29.504  -19.624    3.587   1.823  -1.294  O6   E9R   7  
E9R  C5   C5   C  0  1  Y  N  N  -32.135  23.651  -18.018   -5.120   0.071  -1.244  C5   E9R   8  
E9R  C1   C6   C  0  1  N  N  N  -34.791  21.044  -17.297   -8.201  -1.271   0.482  C1   E9R   9  
E9R  C10  C7   C  0  1  N  N  N  -28.389  24.989  -19.817   -0.750   1.077  -0.540  C10  E9R  10  
E9R  C11  C8   C  0  1  N  N  N  -29.745  24.318  -19.634   -2.206   0.819  -0.147  C11  E9R  11  
E9R  C12  C9   C  0  1  N  N  N  -29.729  23.523  -18.336   -2.766  -0.329  -0.989  C12  E9R  12  
E9R  C18  C10  C  0  1  N  N  N  -26.826  28.473  -18.977    3.227   1.073  -0.408  C18  E9R  13  
E9R  C3   C11  C  0  1  Y  N  N  -32.296  20.948  -17.636   -5.729  -1.690   0.739  C3   E9R  14  
E9R  C7   C12  C  0  1  N  N  S  -27.100  26.845  -20.896    1.266   2.483  -0.091  C7   E9R  15  
E9R  C9   C13  C  0  1  N  N  N  -28.387  26.023  -20.936   -0.190   2.225   0.303  C9   E9R  16  
E9R  O1   O2   O  0  1  N  N  N  -35.810  22.046  -17.221   -9.059  -0.466  -0.329  O1   E9R  17  
E9R  O2   O3   O  0  1  N  N  N  -26.273  28.074  -22.743    2.729   3.586   1.391  O2   E9R  18  
E9R  O3   O4   O  0  1  N  N  N  -32.339  19.599  -17.452   -5.993  -2.577   1.735  O3   E9R  19  
E9R  O4   O5   O  0  1  N  N  N  -28.198  28.697  -21.883    1.184   4.882   0.486  O4   E9R  20  
E9R  O5   O6   O  0  1  N  N  N  -26.722  28.601  -17.533    3.975  -0.001  -0.090  O5   E9R  21  
E9R  H1   H1   H  0  1  N  N  N  -30.176  20.985  -17.944   -3.608  -1.946   0.847  H1   E9R  22  
E9R  H2   H2   H  0  1  N  N  N  -27.000  26.500  -18.824    1.792   0.716   0.962  H2   E9R  23  
E9R  H3   H3   H  0  1  N  N  N  -34.264  23.691  -17.712   -7.227   0.406  -1.436  H3   E9R  24  
E9R  H4   H4   H  0  1  N  N  N  -32.062  24.718  -18.171   -4.865   0.767  -2.030  H4   E9R  25  
E9R  H5   H5   H  0  1  N  N  N  -35.027  20.341  -18.110   -8.442  -2.323   0.333  H5   E9R  26  
E9R  H6   H6   H  0  1  N  N  N  -34.741  20.498  -16.343   -8.344  -1.010   1.531  H6   E9R  27  
E9R  H7   H7   H  0  1  N  N  N  -27.643  24.215  -20.052   -0.161   0.177  -0.365  H7   E9R  28  
E9R  H8   H8   H  0  1  N  N  N  -28.115  25.489  -18.876   -0.701   1.344  -1.596  H8   E9R  29  
E9R  H9   H9   H  0  1  N  N  N  -30.533  25.084  -19.588   -2.255   0.552   0.909  H9   E9R  30  
E9R  H10  H10  H  0  1  N  N  N  -29.940  23.641  -20.479   -2.795   1.719  -0.322  H10  E9R  31  
E9R  H11  H11  H  0  1  N  N  N  -28.961  22.739  -18.406   -2.177  -1.229  -0.814  H11  E9R  32  
E9R  H12  H12  H  0  1  N  N  N  -29.487  24.201  -17.504   -2.717  -0.062  -2.045  H12  E9R  33  
E9R  H13  H13  H  0  1  N  N  N  -26.258  26.189  -21.164    1.326   2.662  -1.164  H13  E9R  34  
E9R  H14  H14  H  0  1  N  N  N  -29.250  26.694  -20.812   -0.779   3.125   0.127  H14  E9R  35  
E9R  H15  H15  H  0  1  N  N  N  -28.459  25.509  -21.906   -0.239   1.958   1.358  H15  E9R  36  
E9R  H16  H16  H  0  1  N  N  N  -36.648  21.633  -17.048  -10.000  -0.574  -0.134  H16  E9R  37  
E9R  H17  H17  H  0  1  N  N  N  -33.235  19.330  -17.288   -6.021  -2.181   2.617  H17  E9R  38  
E9R  H18  H18  H  0  1  N  N  N  -28.130  29.343  -22.576    1.549   5.627   0.983  H18  E9R  39  
E9R  C13  C14  C  0  1  N  N  N        ?       ?        ?    5.199  -0.199  -0.846  C13  E9R  40  
E9R  C14  C15  C  0  1  Y  N  N        ?       ?        ?    5.898  -1.440  -0.354  C14  E9R  41  
E9R  C15  C16  C  0  1  Y  N  N        ?       ?        ?    5.617  -2.666  -0.929  C15  E9R  42  
E9R  C16  C17  C  0  1  Y  N  N        ?       ?        ?    6.258  -3.804  -0.478  C16  E9R  43  
E9R  C17  C18  C  0  1  Y  N  N        ?       ?        ?    7.181  -3.717   0.548  C17  E9R  44  
E9R  C19  C19  C  0  1  Y  N  N        ?       ?        ?    7.462  -2.491   1.122  C19  E9R  45  
E9R  C20  C20  C  0  1  Y  N  N        ?       ?        ?    6.824  -1.352   0.668  C20  E9R  46  
E9R  H19  H19  H  0  1  N  N  N        ?       ?        ?    4.958  -0.313  -1.904  H19  E9R  47  
E9R  H20  H20  H  0  1  N  N  N        ?       ?        ?    5.852   0.663  -0.713  H20  E9R  48  
E9R  H21  H21  H  0  1  N  N  N        ?       ?        ?    4.897  -2.734  -1.731  H21  E9R  49  
E9R  H22  H22  H  0  1  N  N  N        ?       ?        ?    6.039  -4.761  -0.927  H22  E9R  50  
E9R  H23  H23  H  0  1  N  N  N        ?       ?        ?    7.681  -4.607   0.901  H23  E9R  51  
E9R  H24  H24  H  0  1  N  N  N        ?       ?        ?    8.182  -2.424   1.924  H24  E9R  52  
E9R  H25  H25  H  0  1  N  N  N        ?       ?        ?    7.044  -0.395   1.117  H25  E9R  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E9R  O2   C8   DOUB  N  N   1  
E9R  C8   O4   SING  N  N   2  
E9R  C8   C7   SING  N  N   3  
E9R  C9   C7   SING  N  N   4  
E9R  C9   C10  SING  N  N   5  
E9R  C7   N2   SING  N  N   6  
E9R  C10  C11  SING  N  N   7  
E9R  C11  C12  SING  N  N   8  
E9R  O6   C18  DOUB  N  N   9  
E9R  N2   C18  SING  N  N  10  
E9R  C18  O5   SING  N  N  11  
E9R  C12  N1   SING  N  N  12  
E9R  N1   C5   DOUB  Y  N  13  
E9R  N1   C4   SING  Y  N  14  
E9R  C5   C6   SING  Y  N  15  
E9R  C4   C3   DOUB  Y  N  16  
E9R  C6   C2   DOUB  Y  N  17  
E9R  C3   C2   SING  Y  N  18  
E9R  C3   O3   SING  N  N  19  
E9R  C2   C1   SING  N  N  20  
E9R  C1   O1   SING  N  N  21  
E9R  C4   H1   SING  N  N  22  
E9R  N2   H2   SING  N  N  23  
E9R  C6   H3   SING  N  N  24  
E9R  C5   H4   SING  N  N  25  
E9R  C1   H5   SING  N  N  26  
E9R  C1   H6   SING  N  N  27  
E9R  C10  H7   SING  N  N  28  
E9R  C10  H8   SING  N  N  29  
E9R  C11  H9   SING  N  N  30  
E9R  C11  H10  SING  N  N  31  
E9R  C12  H11  SING  N  N  32  
E9R  C12  H12  SING  N  N  33  
E9R  C7   H13  SING  N  N  34  
E9R  C9   H14  SING  N  N  35  
E9R  C9   H15  SING  N  N  36  
E9R  O1   H16  SING  N  N  37  
E9R  O3   H17  SING  N  N  38  
E9R  O4   H18  SING  N  N  39  
E9R  O5   C13  SING  N  N  40  
E9R  C13  C14  SING  N  N  41  
E9R  C14  C15  SING  Y  N  42  
E9R  C15  C16  DOUB  Y  N  43  
E9R  C16  C17  SING  Y  N  44  
E9R  C17  C19  DOUB  Y  N  45  
E9R  C19  C20  SING  Y  N  46  
E9R  C20  C14  DOUB  Y  N  47  
E9R  C13  H19  SING  N  N  48  
E9R  C13  H20  SING  N  N  49  
E9R  C15  H21  SING  N  N  50  
E9R  C16  H22  SING  N  N  51  
E9R  C17  H23  SING  N  N  52  
E9R  C19  H24  SING  N  N  53  
E9R  C20  H25  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E9R  InChI             InChI                 1.03   "InChI=1S/C20H24N2O6/c23-13-16-9-11-22(12-18(16)24)10-5-4-8-17(19(25)26)21-20(27)28-14-15-6-2-1-3-7-15/h1-3,6-7,9,11-12,17,23H,4-5,8,10,13-14H2,(H2-,21,24,25,26,27)/p+1/t17-/m0/s1"  
E9R  InChIKey          InChI                 1.03   MCKINXUETXTBTK-KRWDZBQOSA-O  
E9R  SMILES_CANONICAL  CACTVS                3.385  "OCc1cc[n+](CCCC[C@H](NC(=O)OCc2ccccc2)C(O)=O)cc1O"  
E9R  SMILES            CACTVS                3.385  "OCc1cc[n+](CCCC[CH](NC(=O)OCc2ccccc2)C(O)=O)cc1O"  
E9R  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)COC(=O)N[C@@H](CCCC[n+]2ccc(c(c2)O)CO)C(=O)O"  
E9R  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)COC(=O)NC(CCCC[n+]2ccc(c(c2)O)CO)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          E9R
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-6-[4-(hydroxymethyl)-3-oxidanyl-pyridin-1-ium-1-yl]-2-(phenylmethoxycarbonylamino)hexanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E9R  "Create component"  2019-11-26  PDBJ  
E9R  "Initial release"   2020-11-25  RCSB  
##
