data_E3R
# 
_chem_comp.id                                    E3R 
_chem_comp.name                                  "7-[(6aR,9R,10aR)-1-Hydroxy-9-(hydroxymethyl)-6,6-dimethyl-6a,7,8,9,10,10a-hexahydro-6H-benzo[c]chromen-3-yl]- 7-methyloctanenitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H37 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-17 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        399.566 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     E3R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6KPF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
E3R C1  C1  C 0 1 Y N N 111.573 110.761 126.181 0.038  -1.806 0.225  C1  E3R 1  
E3R C2  C2  C 0 1 Y N N 110.931 111.647 125.339 1.022  -0.853 0.065  C2  E3R 2  
E3R C3  C3  C 0 1 Y N N 110.033 111.277 124.356 0.681  0.454  -0.226 C3  E3R 3  
E3R C4  C4  C 0 1 Y N N 109.866 109.888 124.333 -0.654 0.804  -0.362 C4  E3R 4  
E3R C5  C5  C 0 1 Y N N 110.465 108.877 125.157 -1.647 -0.153 -0.206 C5  E3R 5  
E3R N1  N1  N 0 1 N N N 105.830 111.822 129.648 10.563 1.015  0.078  N1  E3R 6  
E3R C10 C6  C 0 1 N N N 108.980 106.739 124.611 -3.373 1.629  0.177  C10 E3R 7  
E3R C11 C7  C 0 1 N N R 108.631 105.255 124.655 -4.842 1.972  -0.097 C11 E3R 8  
E3R C12 C8  C 0 1 N N N 108.827 104.816 126.112 -5.756 0.940  0.562  C12 E3R 9  
E3R C13 C9  C 0 1 N N N 110.153 105.289 126.748 -5.436 -0.464 0.036  C13 E3R 10 
E3R C14 C10 C 0 1 N N N 107.165 105.116 124.246 -5.153 3.359  0.469  C14 E3R 11 
E3R C15 C11 C 0 1 N N N 111.934 106.741 128.604 -4.522 -3.215 0.488  C15 E3R 12 
E3R C16 C12 C 0 1 N N N 112.866 106.362 126.303 -3.677 -2.246 -1.658 C16 E3R 13 
E3R C17 C13 C 0 1 N N N 111.257 113.150 125.523 2.472  -1.237 0.209  C17 E3R 14 
E3R C18 C14 C 0 1 N N N 110.860 113.606 126.961 3.351  -0.004 -0.015 C18 E3R 15 
E3R C19 C15 C 0 1 N N N 110.534 114.030 124.482 2.717  -1.789 1.615  C19 E3R 16 
E3R C20 C16 C 0 1 N N N 112.769 113.331 125.312 2.822  -2.307 -0.827 C20 E3R 17 
E3R C21 C17 C 0 1 N N N 109.335 113.638 127.095 4.823  -0.395 0.131  C21 E3R 18 
E3R C22 C18 C 0 1 N N N 108.904 113.107 128.469 5.702  0.838  -0.093 C22 E3R 19 
E3R C23 C19 C 0 1 N N N 108.200 114.232 129.240 7.174  0.448  0.053  C23 E3R 20 
E3R C24 C20 C 0 1 N N N 107.506 113.640 130.486 8.053  1.680  -0.170 C24 E3R 21 
E3R C25 C21 C 0 1 N N N 106.589 112.609 130.026 9.469  1.305  -0.030 C25 E3R 22 
E3R C6  C22 C 0 1 Y N N 111.382 109.378 126.136 -1.304 -1.463 0.090  C6  E3R 23 
E3R C7  C23 C 0 1 N N R 110.303 107.341 125.150 -3.086 0.237  -0.377 C7  E3R 24 
E3R C8  C24 C 0 1 N N R 110.417 106.811 126.610 -3.975 -0.779 0.346  C8  E3R 25 
E3R C9  C25 C 0 1 N N N 111.823 107.128 127.125 -3.586 -2.177 -0.132 C9  E3R 26 
E3R O1  O1  O 0 1 N N N 112.057 108.559 127.008 -2.240 -2.430 0.276  O1  E3R 27 
E3R O2  O2  O 0 1 N N N 106.783 103.751 124.214 -6.486 3.731  0.114  O2  E3R 28 
E3R O3  O3  O 0 1 N N N 108.971 109.583 123.340 -0.992 2.089  -0.649 O3  E3R 29 
E3R H1  H1  H 0 1 N N N 112.260 111.159 126.914 0.311  -2.826 0.452  H1  E3R 30 
E3R H2  H2  H 0 1 N N N 109.529 111.966 123.695 1.452  1.201  -0.348 H2  E3R 31 
E3R H3  H3  H 0 1 N N N 108.936 107.023 123.549 -2.729 2.358  -0.314 H3  E3R 32 
E3R H4  H4  H 0 1 N N N 108.176 107.249 125.161 -3.189 1.640  1.252  H4  E3R 33 
E3R H5  H5  H 0 1 N N N 109.282 104.678 123.982 -5.017 1.976  -1.173 H5  E3R 34 
E3R H6  H6  H 0 1 N N N 107.996 105.221 126.708 -5.608 0.963  1.641  H6  E3R 35 
E3R H7  H7  H 0 1 N N N 108.802 103.717 126.147 -6.795 1.182  0.336  H7  E3R 36 
E3R H8  H8  H 0 1 N N N 110.131 105.038 127.819 -6.080 -1.194 0.526  H8  E3R 37 
E3R H9  H9  H 0 1 N N N 110.980 104.750 126.263 -5.600 -0.498 -1.041 H9  E3R 38 
E3R H10 H10 H 0 1 N N N 107.025 105.554 123.247 -5.058 3.338  1.555  H10 E3R 39 
E3R H11 H11 H 0 1 N N N 106.535 105.651 124.972 -4.451 4.085  0.058  H11 E3R 40 
E3R H12 H12 H 0 1 N N N 111.183 107.295 129.186 -4.233 -4.212 0.154  H12 E3R 41 
E3R H13 H13 H 0 1 N N N 111.760 105.661 128.714 -4.453 -3.163 1.575  H13 E3R 42 
E3R H14 H14 H 0 1 N N N 112.940 106.990 128.973 -5.547 -3.011 0.179  H14 E3R 43 
E3R H15 H15 H 0 1 N N N 113.873 106.595 126.679 -3.000 -1.512 -2.096 H15 E3R 44 
E3R H16 H16 H 0 1 N N N 112.682 105.281 126.393 -3.398 -3.244 -1.995 H16 E3R 45 
E3R H17 H17 H 0 1 N N N 112.791 106.660 125.247 -4.699 -2.029 -1.971 H17 E3R 46 
E3R H18 H18 H 0 1 N N N 111.276 112.900 127.695 3.177  0.389  -1.016 H18 E3R 47 
E3R H19 H19 H 0 1 N N N 111.264 114.612 127.149 3.102  0.758  0.723  H19 E3R 48 
E3R H20 H20 H 0 1 N N N 109.446 113.925 124.604 2.091  -2.667 1.774  H20 E3R 49 
E3R H21 H21 H 0 1 N N N 110.819 115.082 124.630 3.766  -2.067 1.718  H21 E3R 50 
E3R H22 H22 H 0 1 N N N 110.822 113.711 123.469 2.468  -1.027 2.353  H22 E3R 51 
E3R H23 H23 H 0 1 N N N 113.318 112.716 126.040 2.648  -1.913 -1.829 H23 E3R 52 
E3R H24 H24 H 0 1 N N N 113.037 113.018 124.292 3.870  -2.585 -0.724 H24 E3R 53 
E3R H25 H25 H 0 1 N N N 113.035 114.389 125.453 2.195  -3.185 -0.668 H25 E3R 54 
E3R H26 H26 H 0 1 N N N 108.983 114.674 126.981 4.997  -0.788 1.133  H26 E3R 55 
E3R H27 H27 H 0 1 N N N 108.889 113.011 126.309 5.072  -1.157 -0.607 H27 E3R 56 
E3R H28 H28 H 0 1 N N N 108.213 112.261 128.338 5.528  1.231  -1.094 H28 E3R 57 
E3R H29 H29 H 0 1 N N N 109.789 112.773 129.030 5.453  1.600  0.646  H29 E3R 58 
E3R H30 H30 H 0 1 N N N 108.941 114.982 129.554 7.348  0.054  1.055  H30 E3R 59 
E3R H31 H31 H 0 1 N N N 107.449 114.707 128.592 7.423  -0.315 -0.685 H31 E3R 60 
E3R H32 H32 H 0 1 N N N 108.256 113.202 131.161 7.879  2.073  -1.172 H32 E3R 61 
E3R H33 H33 H 0 1 N N N 106.951 114.427 131.016 7.804  2.443  0.568  H33 E3R 62 
E3R H34 H34 H 0 1 N N N 111.133 106.913 124.569 -3.334 0.220  -1.439 H34 E3R 63 
E3R H35 H35 H 0 1 N N N 109.685 107.348 127.231 -3.809 -0.706 1.421  H35 E3R 64 
E3R H36 H36 H 0 1 N N N 105.871 103.683 123.958 -6.752 4.601  0.440  H36 E3R 65 
E3R H37 H37 H 0 1 N N N 108.843 108.642 123.307 -1.049 2.279  -1.595 H37 E3R 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
E3R O3  C4  SING N N 1  
E3R O2  C14 SING N N 2  
E3R C14 C11 SING N N 3  
E3R C4  C3  DOUB Y N 4  
E3R C4  C5  SING Y N 5  
E3R C3  C2  SING Y N 6  
E3R C19 C17 SING N N 7  
E3R C10 C11 SING N N 8  
E3R C10 C7  SING N N 9  
E3R C11 C12 SING N N 10 
E3R C7  C5  SING N N 11 
E3R C7  C8  SING N N 12 
E3R C5  C6  DOUB Y N 13 
E3R C20 C17 SING N N 14 
E3R C2  C17 SING N N 15 
E3R C2  C1  DOUB Y N 16 
E3R C17 C18 SING N N 17 
E3R C12 C13 SING N N 18 
E3R C6  C1  SING Y N 19 
E3R C6  O1  SING N N 20 
E3R C16 C9  SING N N 21 
E3R C8  C13 SING N N 22 
E3R C8  C9  SING N N 23 
E3R C18 C21 SING N N 24 
E3R O1  C9  SING N N 25 
E3R C21 C22 SING N N 26 
E3R C9  C15 SING N N 27 
E3R C22 C23 SING N N 28 
E3R C23 C24 SING N N 29 
E3R N1  C25 TRIP N N 30 
E3R C25 C24 SING N N 31 
E3R C1  H1  SING N N 32 
E3R C3  H2  SING N N 33 
E3R C10 H3  SING N N 34 
E3R C10 H4  SING N N 35 
E3R C11 H5  SING N N 36 
E3R C12 H6  SING N N 37 
E3R C12 H7  SING N N 38 
E3R C13 H8  SING N N 39 
E3R C13 H9  SING N N 40 
E3R C14 H10 SING N N 41 
E3R C14 H11 SING N N 42 
E3R C15 H12 SING N N 43 
E3R C15 H13 SING N N 44 
E3R C15 H14 SING N N 45 
E3R C16 H15 SING N N 46 
E3R C16 H16 SING N N 47 
E3R C16 H17 SING N N 48 
E3R C18 H18 SING N N 49 
E3R C18 H19 SING N N 50 
E3R C19 H20 SING N N 51 
E3R C19 H21 SING N N 52 
E3R C19 H22 SING N N 53 
E3R C20 H23 SING N N 54 
E3R C20 H24 SING N N 55 
E3R C20 H25 SING N N 56 
E3R C21 H26 SING N N 57 
E3R C21 H27 SING N N 58 
E3R C22 H28 SING N N 59 
E3R C22 H29 SING N N 60 
E3R C23 H30 SING N N 61 
E3R C23 H31 SING N N 62 
E3R C24 H32 SING N N 63 
E3R C24 H33 SING N N 64 
E3R C7  H34 SING N N 65 
E3R C8  H35 SING N N 66 
E3R O2  H36 SING N N 67 
E3R O3  H37 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
E3R InChI            InChI                1.06  "InChI=1S/C25H37NO3/c1-24(2,11-7-5-6-8-12-26)18-14-21(28)23-19-13-17(16-27)9-10-20(19)25(3,4)29-22(23)15-18/h14-15,17,19-20,27-28H,5-11,13,16H2,1-4H3/t17-,19-,20-/m1/s1" 
E3R InChIKey         InChI                1.06  FTYAKKNPQHUECV-MISYRCLQSA-N                                                                                                                                               
E3R SMILES_CANONICAL CACTVS               3.385 "CC(C)(CCCCCC#N)c1cc(O)c2[C@@H]3C[C@H](CO)CC[C@H]3C(C)(C)Oc2c1"                                                                                                           
E3R SMILES           CACTVS               3.385 "CC(C)(CCCCCC#N)c1cc(O)c2[CH]3C[CH](CO)CC[CH]3C(C)(C)Oc2c1"                                                                                                               
E3R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2CC[C@H](C[C@H]2c3c(cc(cc3O1)C(C)(C)CCCCCC#N)O)CO)C"                                                                                                           
E3R SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2CCC(CC2c3c(cc(cc3O1)C(C)(C)CCCCCC#N)O)CO)C"                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           E3R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(6~{a}~{R},9~{R},10~{a}~{R})-9-(hydroxymethyl)-6,6-dimethyl-1-oxidanyl-6~{a},7,8,9,10,10~{a}-hexahydrobenzo[c]chromen-3-yl]-7-methyl-octanenitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
E3R "Create component"  2022-04-17 PDBJ 
E3R "Modify name"       2022-04-19 PDBJ 
E3R "Initial release"   2022-04-27 RCSB 
E3R "Modify descriptor" 2022-08-22 RCSB 
# 
