data_BMR
#

_chem_comp.id                                   BMR
_chem_comp.name                                 "((2R,3S,5R)-3-hydroxy-5-(3-methoxynaphthalen-2-yl)methyl-tetrahydrogen-triphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H21 O13 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        dNaM-Triphosphate
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-10-02
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       514.251
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BMR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4C8k
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BMR  C1      C1      C  0  1  Y  N  N  20.627  -20.061   -3.923   4.330   0.080   0.442  C1      BMR   1  
BMR  C2      C2      C  0  1  Y  N  N  20.337  -18.727   -4.220   3.765  -0.877  -0.341  C2      BMR   2  
BMR  C3      C3      C  0  1  Y  N  N  19.380  -18.035   -3.487   4.470  -2.063  -0.610  C3      BMR   3  
BMR  C4      C4      C  0  1  Y  N  N  18.701  -18.671   -2.453   5.763  -2.245  -0.060  C4      BMR   4  
BMR  C5      C5      C  0  1  Y  N  N  18.984  -20.000   -2.156   6.318  -1.237   0.745  C5      BMR   5  
BMR  C6      C6      C  0  1  Y  N  N  19.945  -20.690   -2.892   5.606  -0.097   0.986  C6      BMR   6  
BMR  PA      PA      P  0  1  N  N  N  20.247  -17.084   -8.306  -1.972   1.390  -1.061  PA      BMR   7  
BMR  PB      PB      P  0  1  N  N  N  18.231  -17.369  -10.268  -4.614   0.366  -0.192  PB      BMR   8  
BMR  PC      PC      P  0  1  N  N  N  18.018  -14.844  -11.491  -6.278  -1.763   1.026  PC      BMR   9  
BMR  "C1'"   "C1'"   C  0  1  N  N  R  21.648  -20.816   -4.700   3.573   1.353   0.723  "C1'"   BMR  10  
BMR  O1A     O1A     O  0  1  N  N  N  21.138  -16.884   -9.512  -1.650   0.462  -2.337  O1A     BMR  11  
BMR  O1B     O1B     O  0  1  N  N  N  16.934  -18.133  -10.409  -4.963  -0.091  -1.556  O1B     BMR  12  
BMR  O1C     O1C     O  0  1  N  N  N  17.575  -13.491  -10.988  -7.522  -1.041   0.678  O1C     BMR  13  
BMR  "C2'"   "C2'"   C  0  1  N  N  N  20.980  -21.899   -5.537   3.986   2.465  -0.276  "C2'"   BMR  14  
BMR  C20     C20     C  0  1  Y  N  N  17.743  -17.975   -1.722   6.466  -3.432  -0.330  C20     BMR  15  
BMR  C21     C21     C  0  1  Y  N  N  17.470  -16.646   -2.028   5.897  -4.389  -1.113  C21     BMR  16  
BMR  C22     C22     C  0  1  Y  N  N  18.153  -16.010   -3.062   4.625  -4.209  -1.655  C22     BMR  17  
BMR  C23     C23     C  0  1  Y  N  N  19.107  -16.707   -3.793   3.915  -3.073  -1.415  C23     BMR  18  
BMR  O2A     O2A     O  0  1  N  N  N  19.999  -15.933   -7.363  -2.543   2.676  -1.518  O2A     BMR  19  
BMR  O2B     O2B     O  0  1  N  N  N  19.332  -17.575  -11.284  -5.413   1.724   0.139  O2B     BMR  20  
BMR  O2C     O2C     O  0  1  N  N  N  19.487  -14.918  -11.844  -6.092  -3.019   0.037  O2C     BMR  21  
BMR  "C3'"   "C3'"   C  0  1  N  N  S  20.871  -21.277   -6.913   2.741   3.385  -0.269  "C3'"   BMR  22  
BMR  "O3'"   "O3'"   O  0  1  N  N  N  20.902  -22.269   -7.941   2.944   4.493   0.610  "O3'"   BMR  23  
BMR  O37     O37     O  0  1  N  N  N  20.221  -21.997   -2.588   6.144   0.878   1.765  O37     BMR  24  
BMR  C38     C38     C  0  1  N  N  N  20.890  -22.316   -1.368   7.451   0.639   2.293  C38     BMR  25  
BMR  O3A     O3A     O  0  1  N  N  N  18.826  -17.672   -8.800  -3.030   0.641  -0.106  O3A     BMR  26  
BMR  O3B     O3B     O  0  1  N  N  N  17.887  -15.794  -10.193  -5.021  -0.769   0.875  O3B     BMR  27  
BMR  O3C     O3C     O  0  1  N  N  N  17.093  -15.474  -12.509  -6.369  -2.286   2.546  O3C     BMR  28  
BMR  "C4'"   "C4'"   C  0  1  N  N  R  22.071  -20.349   -6.977   1.607   2.483   0.253  "C4'"   BMR  29  
BMR  "O4'"   "O4'"   O  0  1  N  N  N  22.331  -19.955   -5.623   2.164   1.174   0.464  "O4'"   BMR  30  
BMR  "C5'"   "C5'"   C  0  1  N  N  N  21.859  -19.155   -7.905   0.482   2.409  -0.782  "C5'"   BMR  31  
BMR  "O5'"   "O5'"   O  0  1  N  N  N  20.805  -18.317   -7.428  -0.613   1.666  -0.243  "O5'"   BMR  32  
BMR  H2      H2      H  0  1  N  N  N  20.860  -18.230   -5.024   2.779  -0.726  -0.755  H2      BMR  33  
BMR  H5      H5      H  0  1  N  N  N  18.458  -20.497   -1.354   7.303  -1.363   1.171  H5      BMR  34  
BMR  "H2'"   "H2'"   H  0  1  N  N  N  21.598  -22.809   -5.566   4.867   2.999   0.080  "H2'"   BMR  35  
BMR  "H5'"   "H5'"   H  0  1  N  N  N  22.789  -18.570   -7.956   0.151   3.417  -1.031  "H5'"   BMR  36  
BMR  "H1'"   "H1'"   H  0  1  N  N  N  22.365  -21.284   -4.010   3.739   1.679   1.749  "H1'"   BMR  37  
BMR  "H2'A"  "H2'A"  H  0  0  N  N  N  19.985  -22.144   -5.138   4.158   2.051  -1.269  "H2'A"  BMR  38  
BMR  H20     H20     H  0  1  N  N  N  17.213  -18.466   -0.919   7.452  -3.585   0.083  H20     BMR  39  
BMR  H21     H21     H  0  1  N  N  N  16.726  -16.105   -1.462   6.439  -5.299  -1.319  H21     BMR  40  
BMR  H22     H22     H  0  1  N  N  N  17.941  -14.977   -3.295   4.197  -4.983  -2.274  H22     BMR  41  
BMR  H23     H23     H  0  1  N  N  N  19.636  -16.218   -4.598   2.931  -2.948  -1.841  H23     BMR  42  
BMR  "H3'"   "H3'"   H  0  1  N  N  N  19.947  -20.684   -6.974   2.520   3.735  -1.277  "H3'"   BMR  43  
BMR  "HO3'"  "HO3'"  H  0  0  N  N  N  20.832  -21.848   -8.790   3.684   5.063   0.361  "HO3'"  BMR  44  
BMR  H38     H38     H  0  1  N  N  N  21.024  -23.405   -1.297   8.154   0.498   1.472  H38     BMR  45  
BMR  "H4'"   "H4'"   H  0  1  N  N  N  22.928  -20.925   -7.356   1.222   2.877   1.194  "H4'"   BMR  46  
BMR  "H5'A"  "H5'A"  H  0  0  N  N  N  21.601  -19.521   -8.909   0.849   1.914  -1.682  "H5'A"  BMR  47  
BMR  H38A    H38A    H  0  0  N  N  N  21.873  -21.823   -1.350   7.761   1.493   2.894  H38A    BMR  48  
BMR  H38B    H38B    H  0  0  N  N  N  20.288  -21.965   -0.517   7.434  -0.256   2.914  H38B    BMR  49  
BMR  H1A     H1A     H  0  1  N  N  N  21.455  -15.989   -9.527  -1.272  -0.399  -2.112  H1A     BMR  50  
BMR  H2B     H2B     H  0  1  N  N  N  19.049  -18.207  -11.934  -5.233   2.082   1.019  H2B     BMR  51  
BMR  H2C     H2C     H  0  1  N  N  N  19.894  -14.075  -11.684  -5.295  -3.539   0.208  H2C     BMR  52  
BMR  H3C     H3C     H  0  1  N  N  N  16.358  -14.894  -12.671  -7.106  -2.890   2.711  H3C     BMR  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BMR  C1     C2      DOUB  Y  N   1  
BMR  C1     C6      SING  Y  N   2  
BMR  C1     "C1'"   SING  N  N   3  
BMR  C2     C3      SING  Y  N   4  
BMR  C2     H2      SING  N  N   5  
BMR  C3     C4      DOUB  Y  N   6  
BMR  C3     C23     SING  Y  N   7  
BMR  C4     C5      SING  Y  N   8  
BMR  C4     C20     SING  Y  N   9  
BMR  C5     C6      DOUB  Y  N  10  
BMR  C5     H5      SING  N  N  11  
BMR  C6     O37     SING  N  N  12  
BMR  PA     O1A     SING  N  N  13  
BMR  PA     O2A     DOUB  N  N  14  
BMR  PA     O3A     SING  N  N  15  
BMR  PA     "O5'"   SING  N  N  16  
BMR  PB     O1B     DOUB  N  N  17  
BMR  PB     O2B     SING  N  N  18  
BMR  PB     O3A     SING  N  N  19  
BMR  PB     O3B     SING  N  N  20  
BMR  PC     O1C     DOUB  N  N  21  
BMR  PC     O2C     SING  N  N  22  
BMR  PC     O3B     SING  N  N  23  
BMR  PC     O3C     SING  N  N  24  
BMR  "C1'"  "C2'"   SING  N  N  25  
BMR  "C1'"  "O4'"   SING  N  N  26  
BMR  "C1'"  "H1'"   SING  N  N  27  
BMR  "C2'"  "C3'"   SING  N  N  28  
BMR  "C2'"  "H2'"   SING  N  N  29  
BMR  "C2'"  "H2'A"  SING  N  N  30  
BMR  C20    C21     DOUB  Y  N  31  
BMR  C20    H20     SING  N  N  32  
BMR  C21    C22     SING  Y  N  33  
BMR  C21    H21     SING  N  N  34  
BMR  C22    C23     DOUB  Y  N  35  
BMR  C22    H22     SING  N  N  36  
BMR  C23    H23     SING  N  N  37  
BMR  "C3'"  "O3'"   SING  N  N  38  
BMR  "C3'"  "C4'"   SING  N  N  39  
BMR  "C3'"  "H3'"   SING  N  N  40  
BMR  "O3'"  "HO3'"  SING  N  N  41  
BMR  O37    C38     SING  N  N  42  
BMR  C38    H38     SING  N  N  43  
BMR  C38    H38A    SING  N  N  44  
BMR  C38    H38B    SING  N  N  45  
BMR  "C4'"  "O4'"   SING  N  N  46  
BMR  "C4'"  "C5'"   SING  N  N  47  
BMR  "C4'"  "H4'"   SING  N  N  48  
BMR  "C5'"  "O5'"   SING  N  N  49  
BMR  "C5'"  "H5'"   SING  N  N  50  
BMR  "C5'"  "H5'A"  SING  N  N  51  
BMR  O1A    H1A     SING  N  N  52  
BMR  O2B    H2B     SING  N  N  53  
BMR  O2C    H2C     SING  N  N  54  
BMR  O3C    H3C     SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BMR  InChI             InChI                 1.03   "InChI=1S/C16H21O13P3/c1-25-14-7-11-5-3-2-4-10(11)6-12(14)15-8-13(17)16(27-15)9-26-31(21,22)29-32(23,24)28-30(18,19)20/h2-7,13,15-17H,8-9H2,1H3,(H,21,22)(H,23,24)(H2,18,19,20)/p-4/t13-,15+,16+/m0/s1"  
BMR  InChIKey          InChI                 1.03   OYLYLYUMXXAEFZ-NUEKZKHPSA-J  
BMR  SMILES_CANONICAL  CACTVS                3.385  "COc1cc2ccccc2cc1[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3"  
BMR  SMILES            CACTVS                3.385  "COc1cc2ccccc2cc1[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3"  
BMR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "COc1cc2ccccc2cc1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"  
BMR  SMILES            "OpenEye OEToolkits"  1.7.6  "COc1cc2ccccc2cc1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          BMR
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.6
_pdbx_chem_comp_identifier.identifier       "[[(2R,3S,5R)-5-(3-methoxynaphthalen-2-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BMR  "Create component"    2013-10-02  EBI   
BMR  "Other modification"  2013-10-14  EBI   
BMR  "Initial release"     2013-12-11  RCSB  
BMR  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     BMR
_pdbx_chem_comp_synonyms.name        dNaM-Triphosphate
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
