data_AGR
#

_chem_comp.id                                   AGR
_chem_comp.name                                 
;[(2R,3S,4S,5S)-2,5-bis(hydroxymethyl)-5-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-oxidany
 l-oxolan-3-yl] [(2R,3R,4S,5S)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate
;

_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C17 H31 O18 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "agrocinopine A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-03-12
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       554.391
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AGR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4OUP
_chem_comp.pdbx_subcomponent_list               "4GL TT7 ARA"
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
AGR  C1   C1   C  0  1  N  N  R  13.208  24.287  24.830   4.563  -0.713  -0.833  C1    4GL   1  1  polymer  1  
AGR  C2   C2   C  0  1  N  N  R  13.417  23.255  25.920   5.581  -1.671  -0.209  C2    4GL   2  1  polymer  1  
AGR  O2   O2   O  0  1  N  N  N  14.212  23.785  26.959   5.320  -3.003  -0.658  O2    4GL   3  1  polymer  1  
AGR  C3   C3   C  0  1  N  N  R  13.928  21.918  25.430   5.458  -1.613   1.317  C3    4GL   4  1  polymer  1  
AGR  O3   O3   O  0  1  N  N  N  15.042  21.446  26.229   4.160  -2.062   1.710  O3    4GL   5  1  polymer  1  
AGR  C4   C4   C  0  1  N  N  R  14.239  21.736  24.027   5.663  -0.167   1.780  C4    4GL   6  1  polymer  1  
AGR  O4   O4   O  0  1  N  N  N  14.306  20.320  23.728   6.985   0.259   1.445  O4    4GL   7  1  polymer  1  
AGR  C5   C5   C  0  1  N  N  R  13.487  22.581  23.010   4.641   0.733   1.080  C5    4GL   8  1  polymer  1  
AGR  O5   O5   O  0  1  N  N  N  12.711  23.722  23.622   4.789   0.608  -0.336  O5    4GL   9  1  polymer  1  
AGR  C6   C6   C  0  1  N  N  N  12.636  21.888  22.052   4.877   2.188   1.491  C6    4GL  10  1  polymer  1  
AGR  O6   O6   O  0  1  N  N  N  11.530  21.188  22.516   3.853   3.013   0.930  O6    4GL  11  1  polymer  1  
AGR  O1   O1   O  0  1  N  N  N  14.399  25.021  24.590   3.242  -1.133  -0.488  O2    TT7  12  2  polymer  1  
AGR  CBH  CBH  C  0  1  N  N  S  14.366  26.458  24.298   2.210  -0.445  -1.198  C2    TT7  13  2  polymer  1  
AGR  CAO  CAO  C  0  1  N  N  N  14.275  27.225  25.598   2.446  -0.564  -2.705  C1    TT7  14  2  polymer  1  
AGR  OAD  OAD  O  0  1  N  N  N  14.767  26.606  26.760   3.621   0.167  -3.062  O1    TT7  15  2  polymer  1  
AGR  CBD  CBD  C  0  1  N  N  S  15.664  26.774  23.602   0.836  -1.042  -0.834  C3    TT7  16  2  polymer  1  
AGR  OAK  OAK  O  0  1  N  N  N  16.764  26.078  24.119   0.981  -2.065   0.153  O3    TT7  17  2  polymer  1  
AGR  OAR  OAR  O  0  1  N  N  N  13.411  26.839  23.341   2.192   0.940  -0.814  O5    TT7  18  2  polymer  1  
AGR  CBC  CBC  C  0  1  N  N  R  14.015  26.898  22.083   0.814   1.370  -0.849  C5    TT7  19  2  polymer  1  
AGR  CAN  CAN  C  0  1  N  N  N  13.344  26.039  21.079   0.612   2.611   0.023  C6    TT7  20  2  polymer  1  
AGR  OAC  OAC  O  0  1  N  N  N  12.089  25.521  21.407   1.234   3.736  -0.600  O6    TT7  21  2  polymer  1  
AGR  CBG  CBG  C  0  1  N  N  S  15.398  26.430  22.285   0.041   0.156  -0.260  C4    TT7  22  2  polymer  1  
AGR  OAU  OAU  O  0  1  N  N  N  16.270  27.156  21.418  -1.311   0.141  -0.721  O4    TT7  23  2  polymer  1  
AGR  O15  O15  O  0  1  N  N  N  18.131  27.350  19.813  -2.473  -0.919   1.254  OP1   TT7  24  2  polymer  1  
AGR  P1   P1   P  0  1  N  N  N  16.898  26.526  20.069  -2.577   0.185   0.273  P4    TT7  25  2  polymer  1  
AGR  OAL  OAL  O  0  1  N  N  N  17.260  25.082  20.241  -2.599   1.593   1.052  OP2   TT7  26  2  polymer  1  
AGR  C8   C8   C  0  1  N  N  R  16.458  27.295  16.569  -6.111   1.066  -0.455  C1    ARA  27  3  polymer  1  
AGR  CBO  CBO  C  0  1  N  N  R  15.860  27.710  17.892  -5.224  -0.085   0.028  C2    ARA  28  3  polymer  1  
AGR  CBM  CBM  C  0  1  N  N  S  14.522  28.168  17.755  -5.867  -1.418  -0.367  C3    ARA  29  3  polymer  1  
AGR  CBL  CBL  C  0  1  N  N  S  14.284  29.107  16.712  -7.279  -1.485   0.223  C4    ARA  30  3  polymer  1  
AGR  CBN  CBN  C  0  1  N  N  N  15.000  28.815  15.403  -8.087  -0.282  -0.268  C5    ARA  31  3  polymer  1  
AGR  OAH  OAH  O  0  1  N  N  N  17.804  27.100  16.761  -5.547   2.311  -0.041  O1    ARA  32  3  polymer  1  
AGR  OBA  OBA  O  0  1  N  N  N  15.897  26.605  18.845  -3.934   0.021  -0.577  O2    ARA  33  3  polymer  1  
AGR  O14  O14  O  0  1  N  N  N  14.079  28.696  19.059  -5.083  -2.497   0.145  O3    ARA  34  3  polymer  1  
AGR  O10  O10  O  0  1  N  N  N  14.628  30.429  17.122  -7.202  -1.458   1.650  O4    ARA  35  3  polymer  1  
AGR  OAX  OAX  O  0  1  N  N  N  16.304  28.281  15.563  -7.418   0.924   0.105  O5    ARA  36  3  polymer  1  
AGR  H11  H11  H  0  1  N  N  N  12.451  24.991  25.206   4.675  -0.717  -1.917  H1    4GL  37  1  polymer  1  
AGR  H2   H2   H  0  1  N  N  N  12.421  23.060  26.344   6.588  -1.378  -0.505  H2    4GL  38  1  polymer  1  
AGR  H1   H1   H  0  1  N  N  N  14.333  23.127  27.633   5.378  -3.112  -1.617  HO2   4GL  39  1  polymer  1  
AGR  H3   H3   H  0  1  N  N  N  13.107  21.216  25.637   6.217  -2.253   1.768  H3    4GL  40  1  polymer  1  
AGR  H4   H4   H  0  1  N  N  N  14.843  21.563  27.151   3.960  -2.970   1.443  HO3   4GL  41  1  polymer  1  
AGR  H5   H5   H  0  1  N  N  N  15.279  22.083  23.932   5.523  -0.107   2.859  H4    4GL  42  1  polymer  1  
AGR  H6   H6   H  0  1  N  N  N  14.791  19.874  24.412   7.684  -0.272   1.852  HO4   4GL  43  1  polymer  1  
AGR  H7   H7   H  0  1  N  N  N  14.273  23.063  22.409   3.634   0.432   1.369  H5    4GL  44  1  polymer  1  
AGR  H8   H8   H  0  1  N  N  N  13.273  21.167  21.518   4.852   2.267   2.578  H6    4GL  45  1  polymer  1  
AGR  H9   H9   H  0  1  N  N  N  12.265  22.644  21.345   5.849   2.516   1.125  H6A   4GL  46  1  polymer  1  
AGR  H10  H10  H  0  1  N  N  N  11.075  20.791  21.782   3.940   3.951   1.151  HO6   4GL  47  1  polymer  1  
AGR  H12  H12  H  0  1  N  N  N  14.833  28.164  25.465   2.577  -1.613  -2.970  H12   TT7  48  2  polymer  1  
AGR  H13  H13  H  0  1  N  N  N  13.213  27.451  25.772   1.588  -0.158  -3.241  H11   TT7  49  2  polymer  1  
AGR  H14  H14  H  0  1  N  N  N  14.652  27.188  27.502   3.832   0.135  -4.005  HO1   TT7  50  2  polymer  1  
AGR  H15  H15  H  0  1  N  N  N  15.841  27.857  23.678   0.345  -1.438  -1.723  H3    TT7  51  2  polymer  1  
AGR  H16  H16  H  0  1  N  N  N  16.912  26.342  25.020   0.147  -2.476   0.419  HO3   TT7  52  2  polymer  1  
AGR  H17  H17  H  0  1  N  N  N  14.033  27.935  21.716   0.499   1.564  -1.874  H5    TT7  53  2  polymer  1  
AGR  H18  H18  H  0  1  N  N  N  14.010  25.187  20.878  -0.454   2.803   0.140  H61   TT7  54  2  polymer  1  
AGR  H19  H19  H  0  1  N  N  N  13.225  26.636  20.163   1.061   2.443   1.002  H62   TT7  55  2  polymer  1  
AGR  H20  H20  H  0  1  N  N  N  11.767  24.991  20.687   1.146   4.560  -0.101  HO6   TT7  56  2  polymer  1  
AGR  H21  H21  H  0  1  N  N  N  15.472  25.346  22.116   0.080   0.162   0.829  H4    TT7  57  2  polymer  1  
AGR  H22  H22  H  0  1  N  N  N  18.200  24.978  20.153  -2.666   2.363   0.471  HOP2  TT7  58  2  polymer  1  
AGR  H30  H30  H  0  1  N  N  N  15.978  26.359  16.248  -6.177   1.040  -1.543  H1    ARA  59  3  polymer  1  
AGR  H23  H23  H  0  1  N  N  N  16.475  28.530  18.292  -5.123  -0.036   1.112  H2    ARA  60  3  polymer  1  
AGR  H24  H24  H  0  1  N  N  N  13.897  27.287  17.546  -5.921  -1.489  -1.453  H3    ARA  61  3  polymer  1  
AGR  H26  H26  H  0  1  N  N  N  13.207  29.095  16.490  -7.764  -2.407  -0.098  H4    ARA  62  3  polymer  1  
AGR  H28  H28  H  0  1  N  N  N  15.078  29.754  14.835  -8.180  -0.326  -1.354  H51   ARA  63  3  polymer  1  
AGR  H29  H29  H  0  1  N  N  N  14.398  28.092  14.834  -9.080  -0.301   0.182  H52   ARA  64  3  polymer  1  
AGR  H31  H31  H  0  1  N  N  N  17.936  26.441  17.433  -6.059   3.085  -0.313  HO1   ARA  65  3  polymer  1  
AGR  H25  H25  H  0  1  N  N  N  14.249  28.052  19.736  -5.433  -3.373  -0.068  HO3   ARA  66  3  polymer  1  
AGR  H27  H27  H  0  1  N  N  N  14.190  30.631  17.940  -8.062  -1.498   2.091  HO4   ARA  67  3  polymer  1  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AGR  CBN  OAX  SING  N  N   1  
AGR  CBN  CBL  SING  N  N   2  
AGR  OAX  C8   SING  N  N   3  
AGR  C8   OAH  SING  N  N   4  
AGR  C8   CBO  SING  N  N   5  
AGR  CBL  O10  SING  N  N   6  
AGR  CBL  CBM  SING  N  N   7  
AGR  CBM  CBO  SING  N  N   8  
AGR  CBM  O14  SING  N  N   9  
AGR  CBO  OBA  SING  N  N  10  
AGR  OBA  P1   SING  N  N  11  
AGR  O15  P1   DOUB  N  N  12  
AGR  P1   OAL  SING  N  N  13  
AGR  P1   OAU  SING  N  N  14  
AGR  CAN  OAC  SING  N  N  15  
AGR  CAN  CBC  SING  N  N  16  
AGR  OAU  CBG  SING  N  N  17  
AGR  C6   O6   SING  N  N  18  
AGR  C6   C5   SING  N  N  19  
AGR  CBC  CBG  SING  N  N  20  
AGR  CBC  OAR  SING  N  N  21  
AGR  CBG  CBD  SING  N  N  22  
AGR  C5   O5   SING  N  N  23  
AGR  C5   C4   SING  N  N  24  
AGR  OAR  CBH  SING  N  N  25  
AGR  CBD  OAK  SING  N  N  26  
AGR  CBD  CBH  SING  N  N  27  
AGR  O5   C1   SING  N  N  28  
AGR  O4   C4   SING  N  N  29  
AGR  C4   C3   SING  N  N  30  
AGR  CBH  O1   SING  N  N  31  
AGR  CBH  CAO  SING  N  N  32  
AGR  O1   C1   SING  N  N  33  
AGR  C1   C2   SING  N  N  34  
AGR  C3   C2   SING  N  N  35  
AGR  C3   O3   SING  N  N  36  
AGR  CAO  OAD  SING  N  N  37  
AGR  C2   O2   SING  N  N  38  
AGR  O2   H1   SING  N  N  39  
AGR  C2   H2   SING  N  N  40  
AGR  C3   H3   SING  N  N  41  
AGR  O3   H4   SING  N  N  42  
AGR  C4   H5   SING  N  N  43  
AGR  O4   H6   SING  N  N  44  
AGR  C5   H7   SING  N  N  45  
AGR  C6   H8   SING  N  N  46  
AGR  C6   H9   SING  N  N  47  
AGR  O6   H10  SING  N  N  48  
AGR  C1   H11  SING  N  N  49  
AGR  CAO  H12  SING  N  N  50  
AGR  CAO  H13  SING  N  N  51  
AGR  OAD  H14  SING  N  N  52  
AGR  CBD  H15  SING  N  N  53  
AGR  OAK  H16  SING  N  N  54  
AGR  CBC  H17  SING  N  N  55  
AGR  CAN  H18  SING  N  N  56  
AGR  CAN  H19  SING  N  N  57  
AGR  OAC  H20  SING  N  N  58  
AGR  CBG  H21  SING  N  N  59  
AGR  OAL  H22  SING  N  N  60  
AGR  CBO  H23  SING  N  N  61  
AGR  CBM  H24  SING  N  N  62  
AGR  O14  H25  SING  N  N  63  
AGR  CBL  H26  SING  N  N  64  
AGR  O10  H27  SING  N  N  65  
AGR  CBN  H28  SING  N  N  66  
AGR  CBN  H29  SING  N  N  67  
AGR  C8   H30  SING  N  N  68  
AGR  OAH  H31  SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AGR  SMILES            ACDLabs               12.01  "O=P(OC1C(O)C(O)COC1O)(OC3C(OC(OC2OC(CO)C(O)C(O)C2O)(CO)C3O)CO)O"  
AGR  InChI             InChI                 1.03   "InChI=1S/C17H31O18P/c18-1-6-9(23)10(24)11(25)16(31-6)33-17(4-20)14(26)12(7(2-19)32-17)34-36(28,29)35-13-8(22)5(21)3-30-15(13)27/h5-16,18-27H,1-4H2,(H,28,29)/t5-,6+,7+,8-,9-,10+,11+,12+,13+,14-,15+,16+,17-/m0/s1"  
AGR  InChIKey          InChI                 1.03   BUKOQCAFSQWRGX-FSCBZTLPSA-N  
AGR  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O[C@]2(CO)O[C@H](CO)[C@@H](O[P](O)(=O)O[C@H]3[C@H](O)OC[C@H](O)[C@@H]3O)[C@@H]2O)[C@H](O)[C@H](O)[C@H]1O"  
AGR  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O[C]2(CO)O[CH](CO)[CH](O[P](O)(=O)O[CH]3[CH](O)OC[CH](O)[CH]3O)[CH]2O)[CH](O)[CH](O)[CH]1O"  
AGR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@@H]([C@@H]([C@H]([C@@H](O1)O)OP(=O)(O)O[C@@H]2[C@H](O[C@@]([C@H]2O)(CO)O[C@@H]3[C@@H]([C@@H]([C@H]([C@H](O3)CO)O)O)O)CO)O)O"  
AGR  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(C(C(C(O1)O)OP(=O)(O)OC2C(OC(C2O)(CO)OC3C(C(C(C(O3)CO)O)O)O)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AGR  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3S,4S,5S)-4-hydroxy-2,5-bis(hydroxymethyl)-5-{[(2R,3R,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}tetrahydrofuran-3-yl (2R,3R,4S,5S)-2,4,5-trihydroxytetrahydro-2H-pyran-3-yl hydrogen (R)-phosphate (non-preferred name)"  
AGR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R,3S,4S,5S)-2,5-bis(hydroxymethyl)-5-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-oxidanyl-oxolan-3-yl] [(2R,3R,4S,5S)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AGR  "Create component"    2014-03-12  PDBJ  
AGR  "Initial release"     2015-08-19  RCSB  
AGR  "Other modification"  2020-07-03  RCSB  
AGR  "Obsolete component"  2020-07-17  RCSB  
##
