data_A5R
# 
_chem_comp.id                                    A5R 
_chem_comp.name                                  "amino{[(4S)-4-amino-9-carboxy-5-oxononyl]amino}methaniminium" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H23 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2011-01-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        259.325 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A5R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1IHT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A5R C1   C    C 0 1 N N N Y N N 14.707 18.547 18.343 0.663  1.680  -0.026 C    A5R 1  
A5R N    N    N 0 1 N N N Y Y N 16.115 18.399 20.471 -1.323 3.065  0.179  N    A5R 2  
A5R O1   O    O 0 1 N N N N N N 13.788 19.256 17.871 1.056  2.500  -0.821 O    A5R 3  
A5R CA   CA   C 0 1 N N S Y N N 14.785 18.283 19.858 -0.750 1.749  0.493  CA   A5R 4  
A5R CB   CB   C 0 1 N N N N N N 13.798 19.213 20.642 -1.590 0.656  -0.171 CB   A5R 5  
A5R CD   CD   C 0 1 N N N N N N 12.370 19.159 22.740 -3.831 -0.448 -0.218 CD   A5R 6  
A5R NE   NE   N 0 1 N N N N N N 11.672 18.113 23.461 -5.172 -0.458 0.372  NE   A5R 7  
A5R CG   CG   C 0 1 N N N N N N 13.320 18.431 21.822 -2.991 0.645  0.445  CG   A5R 8  
A5R CZ   CZ   C 0 1 N N N N N N 10.878 18.359 24.509 -6.105 -1.358 -0.066 CZ   A5R 9  
A5R NH1  NH1  N 0 1 N N N N N N 10.702 19.618 24.965 -5.794 -2.224 -1.029 NH1  A5R 10 
A5R NH2  NH2  N 1 1 N N N N N N 10.245 17.322 25.059 -7.324 -1.367 0.470  NH2  A5R 11 
A5R C    C1   C 0 1 N N N Y N Y 15.322 17.907 13.182 6.173  -1.307 0.042  C1   A5R 12 
A5R O    O1   O 0 1 N N N Y N Y 15.021 16.712 13.254 5.779  -2.130 0.834  O1   A5R 13 
A5R C2   C2   C 0 1 N N N Y N N 16.628 18.524 13.691 5.251  -0.211 -0.427 C2   A5R 14 
A5R C3   C3   C 0 1 N N N Y N N 16.945 18.273 15.176 3.886  -0.370 0.246  C3   A5R 15 
A5R C4   C4   C 0 1 N N N Y N N 15.830 18.789 16.060 2.950  0.743  -0.230 C4   A5R 16 
A5R C5   C5   C 0 1 N N N Y N N 15.973 18.325 17.500 1.585  0.585  0.443  C5   A5R 17 
A5R H2   H1N  H 0 1 N Y N Y Y N 16.049 18.208 21.450 -0.824 3.800  0.658  H1N  A5R 18 
A5R H    H2N  H 0 1 N N N Y Y N 16.737 17.742 20.045 -1.335 3.227  -0.817 H2N  A5R 19 
A5R HA   HA   H 0 1 N N N Y N N 14.503 17.223 19.941 -0.749 1.601  1.572  HA   A5R 20 
A5R H1B  H1B  H 0 1 N N N N N N 14.312 20.128 20.971 -1.665 0.854  -1.240 H1B  A5R 21 
A5R H2B  H2B  H 0 1 N N N N N N 12.950 19.499 20.002 -1.116 -0.312 -0.013 H2B  A5R 22 
A5R H1D  H1D  H 0 1 N N N N N N 11.666 19.780 22.167 -3.357 -1.416 -0.060 H1D  A5R 23 
A5R H2D  H2D  H 0 1 N N N N N N 12.916 19.818 23.431 -3.906 -0.250 -1.288 H2D  A5R 24 
A5R HNE  HNE  H 0 1 N N N N N N 11.789 17.166 23.162 -5.398 0.172  1.073  HNE  A5R 25 
A5R H1G  H1G  H 0 1 N N N N N N 12.796 17.542 21.440 -2.916 0.447  1.514  H1G  A5R 26 
A5R H2G  H2G  H 0 1 N N N N N N 14.204 18.151 22.414 -3.465 1.614  0.287  H2G  A5R 27 
A5R H1H1 H1H1 H 0 0 N N N N N N 10.085 19.790 25.733 -4.906 -2.217 -1.420 H1H1 A5R 28 
A5R H2H1 H2H1 H 0 0 N N N N N N 11.189 20.378 24.535 -6.456 -2.862 -1.340 H2H1 A5R 29 
A5R H1H2 H1H2 H 0 0 N N N N N N 9.622  17.467 25.828 -7.550 -0.737 1.171  H1H2 A5R 30 
A5R H2H2 H2H2 H 0 0 N N N N N N 10.393 16.400 24.702 -7.985 -2.005 0.159  H2H2 A5R 31 
A5R OXT  O3   O 0 1 N Y N Y N Y 14.374 18.788 12.573 7.432  -1.368 -0.419 O3   A5R 32 
A5R H12  H12  H 0 1 N N N Y N N 17.450 18.094 13.100 5.675  0.758  -0.164 H12  A5R 33 
A5R H22  H22  H 0 1 N N N Y N N 16.558 19.612 13.547 5.132  -0.274 -1.509 H22  A5R 34 
A5R H13  H13  H 0 1 N N N Y N N 17.061 17.191 15.340 3.462  -1.339 -0.016 H13  A5R 35 
A5R H23  H23  H 0 1 N N N Y N N 17.878 18.794 15.436 4.005  -0.306 1.328  H23  A5R 36 
A5R H14  H14  H 0 1 N N N Y N N 15.851 19.889 16.043 3.374  1.712  0.033  H14  A5R 37 
A5R H24  H24  H 0 1 N N N Y N N 14.872 18.418 15.667 2.831  0.680  -1.312 H24  A5R 38 
A5R H15  H15  H 0 1 N N N Y N N 16.196 17.248 17.493 1.704  0.648  1.525  H15  A5R 39 
A5R H25  H25  H 0 1 N N N Y N N 16.796 18.890 17.962 1.161  -0.384 0.181  H25  A5R 40 
A5R HXT  H231 H 0 0 N Y N Y N Y 13.611 18.293 12.300 7.986  -2.089 -0.090 H231 A5R 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A5R C1  CA   SING N N 1  
A5R N   H2   SING N N 2  
A5R N   H    SING N N 3  
A5R O1  C1   DOUB N N 4  
A5R CA  N    SING N N 5  
A5R CA  CB   SING N N 6  
A5R CA  HA   SING N N 7  
A5R CB  CG   SING N N 8  
A5R CB  H1B  SING N N 9  
A5R CB  H2B  SING N N 10 
A5R CD  NE   SING N N 11 
A5R CD  H1D  SING N N 12 
A5R CD  H2D  SING N N 13 
A5R NE  CZ   SING N N 14 
A5R NE  HNE  SING N N 15 
A5R CG  CD   SING N N 16 
A5R CG  H1G  SING N N 17 
A5R CG  H2G  SING N N 18 
A5R CZ  NH1  SING N N 19 
A5R CZ  NH2  DOUB N N 20 
A5R NH1 H1H1 SING N N 21 
A5R NH1 H2H1 SING N N 22 
A5R NH2 H1H2 SING N N 23 
A5R NH2 H2H2 SING N N 24 
A5R C   O    DOUB N N 25 
A5R C   C2   SING N N 26 
A5R C   OXT  SING N N 27 
A5R C2  C3   SING N N 28 
A5R C2  H12  SING N N 29 
A5R C2  H22  SING N N 30 
A5R C3  C4   SING N N 31 
A5R C3  H13  SING N N 32 
A5R C3  H23  SING N N 33 
A5R C4  C5   SING N N 34 
A5R C4  H14  SING N N 35 
A5R C4  H24  SING N N 36 
A5R C5  C1   SING N N 37 
A5R C5  H15  SING N N 38 
A5R C5  H25  SING N N 39 
A5R OXT HXT  SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A5R SMILES           ACDLabs              12.01 "O=C(CCCCC(=O)O)C(N)CCCNC(=[NH2+])\N"                                                                                 
A5R SMILES_CANONICAL CACTVS               3.370 "N[C@@H](CCCNC(N)=[NH2+])C(=O)CCCCC(O)=O"                                                                             
A5R SMILES           CACTVS               3.370 "N[CH](CCCNC(N)=[NH2+])C(=O)CCCCC(O)=O"                                                                               
A5R SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C(CCC(=O)O)CC(=O)[C@H](CCCNC(=[NH2+])N)N"                                                                            
A5R SMILES           "OpenEye OEToolkits" 1.7.0 "C(CCC(=O)O)CC(=O)C(CCCNC(=[NH2+])N)N"                                                                                
A5R InChI            InChI                1.03  "InChI=1S/C11H22N4O3/c12-8(4-3-7-15-11(13)14)9(16)5-1-2-6-10(17)18/h8H,1-7,12H2,(H,17,18)(H4,13,14,15)/p+1/t8-/m0/s1" 
A5R InChIKey         InChI                1.03  MYCFGDIVKLHPEU-QMMMGPOBSA-O                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A5R "SYSTEMATIC NAME" ACDLabs              12.01 "amino{[(4S)-4-amino-9-carboxy-5-oxononyl]amino}methaniminium"                  
A5R "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[azanyl-[[(4S)-4-azanyl-10-hydroxy-5,10-dioxo-decyl]amino]methylidene]azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A5R "Create component"  2011-01-28 RCSB 
A5R "Modify descriptor" 2011-06-04 RCSB 
A5R "Modify backbone"   2023-11-03 PDBE 
A5R "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A5R 
_pdbx_chem_comp_pcm.modified_residue_id                ARG 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
