data_A1LWR
# 
_chem_comp.id                                    A1LWR 
_chem_comp.name                                  "1,4-dimethyl-3-[(2-nitrophenyl)methyl]-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-benzimidazol-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H21 N3 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-17 
_chem_comp.pdbx_modified_date                    2025-01-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        435.429 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1LWR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XR0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1LWR C13 C1  C 0  1 N N N N N N -3.419 -4.479 88.856 2.579  -0.230 1.299  C13 A1LWR 1  
A1LWR C15 C2  C 0  1 Y N N N N N -4.605 -2.667 87.395 2.595  -2.347 -0.037 C15 A1LWR 2  
A1LWR C17 C3  C 0  1 Y N N N N N -6.230 -3.407 85.443 4.544  -3.051 -1.236 C17 A1LWR 3  
A1LWR C20 C4  C 0  1 N N N N N N 2.020  -3.351 86.810 -2.938 -0.793 0.508  C20 A1LWR 4  
A1LWR C21 C5  C 0  1 N N N N N N 2.893  -4.569 87.131 -4.327 -0.457 0.157  C21 A1LWR 5  
A1LWR C24 C6  C 0  1 N N N N N N 5.124  -5.873 86.750 -6.418 -0.920 -1.175 C24 A1LWR 6  
A1LWR C26 C7  C 0  1 N N N N N N 3.738  -6.453 88.770 -6.304 1.155  0.211  C26 A1LWR 7  
A1LWR C01 C8  C 0  1 Y N N N N N 1.044  -2.831 87.851 -1.839 0.115  0.124  C01 A1LWR 8  
A1LWR C02 C9  C 0  1 Y N N N N N 1.428  -1.651 88.742 -2.099 1.224  -0.688 C02 A1LWR 9  
A1LWR C03 C10 C 0  1 Y N N N N N 0.435  -1.136 89.782 -1.077 2.072  -1.048 C03 A1LWR 10 
A1LWR C04 C11 C 0  1 Y N N N N N -0.943 -1.822 89.912 0.218  1.828  -0.606 C04 A1LWR 11 
A1LWR C05 C12 C 0  1 Y N N N N N -1.316 -2.968 89.041 0.485  0.720  0.206  C05 A1LWR 12 
A1LWR C06 C13 C 0  1 Y N N N N N -0.321 -3.496 87.983 -0.540 -0.131 0.574  C06 A1LWR 13 
A1LWR C07 C14 C 0  1 N N N N N N -0.654 -4.670 87.054 -0.257 -1.321 1.454  C07 A1LWR 14 
A1LWR N08 N1  N 0  1 N N N N N N -2.059 -1.538 90.807 1.426  2.485  -0.797 N08 A1LWR 15 
A1LWR C09 C15 C 0  1 N N N N N N -3.132 -2.501 90.507 2.387  1.814  -0.135 C09 A1LWR 16 
A1LWR N10 N2  N 0  1 N N N N N N -2.666 -3.376 89.416 1.851  0.743  0.481  N10 A1LWR 17 
A1LWR O11 O1  O 0  1 N N N N N N -4.187 -2.559 91.043 3.562  2.128  -0.098 O11 A1LWR 18 
A1LWR C12 C16 C 0  1 N N N N N N -2.088 -0.492 91.808 1.622  3.703  -1.587 C12 A1LWR 19 
A1LWR C14 C17 C 0  1 Y N N N N N -4.344 -4.133 87.707 3.271  -1.223 0.401  C14 A1LWR 20 
A1LWR C16 C18 C 0  1 Y N N N N N -5.555 -2.312 86.255 3.231  -3.261 -0.855 C16 A1LWR 21 
A1LWR C18 C19 C 0  1 Y N N N N N -5.970 -4.869 85.771 5.216  -1.922 -0.808 C18 A1LWR 22 
A1LWR C19 C20 C 0  1 Y N N N N N -5.022 -5.244 86.900 4.581  -1.011 0.016  C19 A1LWR 23 
A1LWR O22 O2  O 0  1 N N N N N N 2.100  -2.800 85.762 -2.696 -1.819 1.116  O22 A1LWR 24 
A1LWR C23 C21 C 0  1 N N N N N N 4.081  -4.888 86.238 -5.005 -1.218 -0.765 C23 A1LWR 25 
A1LWR C25 C22 C 0  1 N N N N N N 5.104  -5.991 88.270 -7.136 -0.092 -0.111 C25 A1LWR 26 
A1LWR C27 C23 C 0  1 N N N N N N 2.630  -5.506 88.317 -4.988 0.686  0.796  C27 A1LWR 27 
A1LWR O28 O3  O 0  1 N N N N N N 4.318  -4.137 85.084 -4.380 -2.267 -1.320 O28 A1LWR 28 
A1LWR O29 O4  O 0  1 N N N N N N 1.591  -5.537 88.886 -4.498 1.237  1.760  O29 A1LWR 29 
A1LWR N30 N3  N 1  1 N N N N N N -4.835 -6.666 87.143 5.300  0.199  0.474  N30 A1LWR 30 
A1LWR O31 O5  O 0  1 N N N N N N -3.937 -7.105 87.754 6.380  0.486  -0.011 O31 A1LWR 31 
A1LWR O32 O6  O -1 1 N N N N N N -5.777 -7.556 86.604 4.813  0.907  1.337  O32 A1LWR 32 
A1LWR H1  H1  H 0  1 N N N N N N -4.030 -4.913 89.661 3.320  0.289  1.907  H1  A1LWR 33 
A1LWR H2  H2  H 0  1 N N N N N N -2.700 -5.229 88.496 1.878  -0.754 1.949  H2  A1LWR 34 
A1LWR H3  H3  H 0  1 N N N N N N -4.125 -1.890 87.971 1.571  -2.513 0.264  H3  A1LWR 35 
A1LWR H4  H4  H 0  1 N N N N N N -6.895 -3.146 84.633 5.040  -3.763 -1.879 H4  A1LWR 36 
A1LWR H6  H6  H 0  1 N N N N N N 4.921  -6.863 86.315 -6.406 -0.365 -2.113 H6  A1LWR 37 
A1LWR H7  H7  H 0  1 N N N N N N 6.120  -5.531 86.434 -6.954 -1.857 -1.321 H7  A1LWR 38 
A1LWR H8  H8  H 0  1 N N N N N N 3.533  -7.459 88.374 -6.120 1.722  -0.702 H8  A1LWR 39 
A1LWR H9  H9  H 0  1 N N N N N N 3.752  -6.487 89.869 -6.833 1.776  0.933  H9  A1LWR 40 
A1LWR H10 H10 H 0  1 N N N N N N 2.396  -1.184 88.637 -3.105 1.416  -1.032 H10 A1LWR 41 
A1LWR H11 H11 H 0  1 N N N N N N 0.693  -0.303 90.419 -1.280 2.927  -1.676 H11 A1LWR 42 
A1LWR H12 H12 H 0  1 N N N N N N -0.344 -5.613 87.528 0.191  -2.115 0.858  H12 A1LWR 43 
A1LWR H13 H13 H 0  1 N N N N N N -1.738 -4.693 86.866 0.431  -1.030 2.248  H13 A1LWR 44 
A1LWR H14 H14 H 0  1 N N N N N N -0.119 -4.546 86.101 -1.189 -1.678 1.893  H14 A1LWR 45 
A1LWR H15 H15 H 0  1 N N N N N N -3.055 -0.512 92.332 1.493  4.576  -0.947 H15 A1LWR 46 
A1LWR H16 H16 H 0  1 N N N N N N -1.275 -0.654 92.531 2.629  3.707  -2.006 H16 A1LWR 47 
A1LWR H17 H17 H 0  1 N N N N N N -1.956 0.485  91.321 0.892  3.734  -2.395 H17 A1LWR 48 
A1LWR H18 H18 H 0  1 N N N N N N -5.750 -1.275 86.023 2.704  -4.139 -1.197 H18 A1LWR 49 
A1LWR H19 H19 H 0  1 N N N N N N -6.460 -5.644 85.200 6.241  -1.758 -1.105 H19 A1LWR 50 
A1LWR H21 H21 H 0  1 N N N N N N 5.866  -6.720 88.583 -8.114 0.211  -0.485 H21 A1LWR 51 
A1LWR H22 H22 H 0  1 N N N N N N 5.333  -5.009 88.709 -7.260 -0.689 0.793  H22 A1LWR 52 
A1LWR H23 H23 H 0  1 N N N N N N 3.640  -3.479 84.989 -3.496 -2.476 -0.991 H23 A1LWR 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1LWR O28 C23 SING N N 1  
A1LWR C17 C18 DOUB Y N 2  
A1LWR C17 C16 SING Y N 3  
A1LWR O22 C20 DOUB N N 4  
A1LWR C18 C19 SING Y N 5  
A1LWR C23 C24 SING N N 6  
A1LWR C23 C21 DOUB N N 7  
A1LWR C16 C15 DOUB Y N 8  
A1LWR O32 N30 SING N N 9  
A1LWR C24 C25 SING N N 10 
A1LWR C20 C21 SING N N 11 
A1LWR C20 C01 SING N N 12 
A1LWR C19 N30 SING N N 13 
A1LWR C19 C14 DOUB Y N 14 
A1LWR C07 C06 SING N N 15 
A1LWR C21 C27 SING N N 16 
A1LWR N30 O31 DOUB N N 17 
A1LWR C15 C14 SING Y N 18 
A1LWR C14 C13 SING N N 19 
A1LWR C01 C06 DOUB Y N 20 
A1LWR C01 C02 SING Y N 21 
A1LWR C06 C05 SING Y N 22 
A1LWR C25 C26 SING N N 23 
A1LWR C27 C26 SING N N 24 
A1LWR C27 O29 DOUB N N 25 
A1LWR C02 C03 DOUB Y N 26 
A1LWR C13 N10 SING N N 27 
A1LWR C05 N10 SING N N 28 
A1LWR C05 C04 DOUB Y N 29 
A1LWR N10 C09 SING N N 30 
A1LWR C03 C04 SING Y N 31 
A1LWR C04 N08 SING N N 32 
A1LWR C09 N08 SING N N 33 
A1LWR C09 O11 DOUB N N 34 
A1LWR N08 C12 SING N N 35 
A1LWR C13 H1  SING N N 36 
A1LWR C13 H2  SING N N 37 
A1LWR C15 H3  SING N N 38 
A1LWR C17 H4  SING N N 39 
A1LWR C24 H6  SING N N 40 
A1LWR C24 H7  SING N N 41 
A1LWR C26 H8  SING N N 42 
A1LWR C26 H9  SING N N 43 
A1LWR C02 H10 SING N N 44 
A1LWR C03 H11 SING N N 45 
A1LWR C07 H12 SING N N 46 
A1LWR C07 H13 SING N N 47 
A1LWR C07 H14 SING N N 48 
A1LWR C12 H15 SING N N 49 
A1LWR C12 H16 SING N N 50 
A1LWR C12 H17 SING N N 51 
A1LWR C16 H18 SING N N 52 
A1LWR C18 H19 SING N N 53 
A1LWR C25 H21 SING N N 54 
A1LWR C25 H22 SING N N 55 
A1LWR O28 H23 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1LWR InChI            InChI                1.06  "InChI=1S/C23H21N3O6/c1-13-15(22(29)20-18(27)8-5-9-19(20)28)10-11-17-21(13)25(23(30)24(17)2)12-14-6-3-4-7-16(14)26(31)32/h3-4,6-7,10-11,27H,5,8-9,12H2,1-2H3" 
A1LWR InChIKey         InChI                1.06  DRLROISZNNCBFZ-UHFFFAOYSA-N                                                                                                                                   
A1LWR SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(Cc2ccccc2[N+]([O-])=O)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O"                                                                                           
A1LWR SMILES           CACTVS               3.385 "CN1C(=O)N(Cc2ccccc2[N+]([O-])=O)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O"                                                                                           
A1LWR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1N(C(=O)N2C)Cc3ccccc3[N+](=O)[O-])C(=O)C4=C(CCCC4=O)O"                                                                                             
A1LWR SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1N(C(=O)N2C)Cc3ccccc3[N+](=O)[O-])C(=O)C4=C(CCCC4=O)O"                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           A1LWR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1,4-dimethyl-3-[(2-nitrophenyl)methyl]-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-benzimidazol-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1LWR "Create component"    2024-01-17 PDBJ 
A1LWR "Modify name"         2024-04-25 PDBJ 
A1LWR "Modify formula"      2024-04-25 PDBJ 
A1LWR "Modify linking type" 2024-04-25 PDBJ 
A1LWR "Initial release"     2025-01-15 RCSB 
# 
