data_A1BDR
# 
_chem_comp.id                                    A1BDR 
_chem_comp.name                                  "N-{7-[(4-aminobutyl)amino]heptyl}-Nalpha-butanoyl-D-tyrosinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H42 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-10-15 
_chem_comp.pdbx_modified_date                    2024-12-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        434.615 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1BDR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9DXQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1BDR C7  C1  C 0 1 Y N N N N N 151.436 150.612 118.691 5.421   -1.663 -0.482 C7  A1BDR 1  
A1BDR C11 C2  C 0 1 Y N N N N N 151.661 153.012 118.499 7.795   -1.970 -0.475 C11 A1BDR 2  
A1BDR C13 C3  C 0 1 N N N N N N 149.347 149.561 116.574 2.586   0.719  0.397  C13 A1BDR 3  
A1BDR C18 C4  C 0 1 N N N N N N 149.333 150.259 109.117 -4.827  0.575  0.060  C18 A1BDR 4  
A1BDR C14 C5  C 0 1 N N N N N N 149.337 150.014 114.166 0.158   0.859  0.255  C14 A1BDR 5  
A1BDR C15 C6  C 0 1 N N N N N N 150.084 149.611 112.911 -1.045  -0.082 0.356  C15 A1BDR 6  
A1BDR C17 C7  C 0 1 N N N N N N 150.072 149.705 110.326 -3.537  -0.223 0.258  C17 A1BDR 7  
A1BDR O1  O1  O 0 1 N N N N N N 148.792 146.527 118.963 4.728   1.989  -0.916 O1  A1BDR 8  
A1BDR C1  C8  C 0 1 N N N N N N 149.890 147.758 122.146 7.756   4.764  -0.181 C1  A1BDR 9  
A1BDR C10 C9  C 0 1 Y N N N N N 151.563 153.143 119.872 7.623   -3.287 -0.074 C10 A1BDR 10 
A1BDR C12 C10 C 0 1 Y N N N N N 151.600 151.756 117.919 6.694   -1.161 -0.677 C12 A1BDR 11 
A1BDR C16 C11 C 0 1 N N N N N N 149.320 149.926 111.631 -2.335  0.717  0.157  C16 A1BDR 12 
A1BDR C19 C12 C 0 1 N N N N N N 150.224 150.433 107.895 -6.030  -0.365 0.160  C19 A1BDR 13 
A1BDR C2  C13 C 0 1 N N N N N N 148.501 147.210 121.916 6.623   3.814  -0.576 C2  A1BDR 14 
A1BDR C20 C14 C 0 1 N N N N N N 150.354 149.238 106.971 -7.320  0.433  -0.038 C20 A1BDR 15 
A1BDR C21 C15 C 0 1 N N N N N N 149.057 150.285 105.153 -9.733  0.264  -0.127 C21 A1BDR 16 
A1BDR C22 C16 C 0 1 N N N N N N 150.233 150.437 104.208 -10.910 -0.708 -0.020 C22 A1BDR 17 
A1BDR C23 C17 C 0 1 N N N N N N 150.097 151.640 103.287 -12.222 0.056  -0.214 C23 A1BDR 18 
A1BDR C24 C18 C 0 1 N N N N N N 151.239 151.819 102.310 -13.399 -0.915 -0.106 C24 A1BDR 19 
A1BDR C3  C19 C 0 1 N N N N N N 147.829 147.838 120.726 6.417   2.778  0.532  C3  A1BDR 20 
A1BDR C4  C20 C 0 1 N N N N N N 148.615 147.644 119.452 5.302   1.842  0.143  C4  A1BDR 21 
A1BDR C5  C21 C 0 1 N N R N N N 149.960 148.746 117.712 3.857   -0.068 0.593  C5  A1BDR 22 
A1BDR C6  C22 C 0 1 N N N N N N 151.374 149.245 118.052 4.221   -0.781 -0.711 C6  A1BDR 23 
A1BDR C8  C23 C 0 1 Y N N N N N 151.348 150.767 120.071 5.246   -2.976 -0.083 C8  A1BDR 24 
A1BDR C9  C24 C 0 1 Y N N N N N 151.405 152.018 120.662 6.344   -3.789 0.122  C9  A1BDR 25 
A1BDR N1  N1  N 0 1 N N N N N N 149.118 148.759 118.896 4.941   0.842  0.971  N1  A1BDR 26 
A1BDR N2  N2  N 0 1 N N N N N N 149.872 149.377 115.359 1.393   0.094  0.445  N2  A1BDR 27 
A1BDR N3  N3  N 0 1 N N N N N N 149.214 149.135 106.053 -8.474  -0.470 0.059  N3  A1BDR 28 
A1BDR N4  N4  N 0 1 N N N N N N 151.083 152.958 101.398 -14.658 -0.182 -0.292 N4  A1BDR 29 
A1BDR O2  O2  O 0 1 N N N N N N 151.624 154.379 120.443 8.705   -4.085 0.127  O2  A1BDR 30 
A1BDR O3  O3  O 0 1 N N N N N N 148.410 150.334 116.788 2.638   1.914  0.197  O3  A1BDR 31 
A1BDR H1  H1  H 0 1 N N N N N N 151.785 153.888 117.880 8.790   -1.578 -0.627 H1  A1BDR 32 
A1BDR H2  H2  H 0 1 N N N N N N 148.912 151.239 109.384 -4.901  1.343  0.829  H2  A1BDR 33 
A1BDR H3  H3  H 0 1 N N N N N N 148.518 149.567 108.859 -4.815  1.046  -0.924 H3  A1BDR 34 
A1BDR H4  H4  H 0 1 N N N N N N 149.410 151.105 114.285 0.170   1.330  -0.728 H4  A1BDR 35 
A1BDR H5  H5  H 0 1 N N N N N N 148.281 149.727 114.056 0.084   1.627  1.025  H5  A1BDR 36 
A1BDR H6  H6  H 0 1 N N N N N N 150.272 148.528 112.949 -0.971  -0.850 -0.414 H6  A1BDR 37 
A1BDR H7  H7  H 0 1 N N N N N N 151.043 150.149 112.887 -1.056  -0.552 1.339  H7  A1BDR 38 
A1BDR H8  H8  H 0 1 N N N N N N 150.218 148.624 110.183 -3.549  -0.694 1.241  H8  A1BDR 39 
A1BDR H9  H9  H 0 1 N N N N N N 151.051 150.201 110.397 -3.463  -0.992 -0.512 H9  A1BDR 40 
A1BDR H10 H10 H 0 1 N N N N N N 150.337 147.269 123.024 8.675   4.195  -0.039 H10 A1BDR 41 
A1BDR H11 H11 H 0 1 N N N N N N 150.513 147.562 121.261 7.903   5.502  -0.969 H11 A1BDR 42 
A1BDR H12 H12 H 0 1 N N N N N N 149.832 148.842 122.321 7.496   5.272  0.748  H12 A1BDR 43 
A1BDR H13 H13 H 0 1 N N N N N N 151.681 151.664 116.846 6.828   -0.136 -0.989 H13 A1BDR 44 
A1BDR H14 H14 H 0 1 N N N N N N 149.021 150.984 111.671 -2.408  1.485  0.927  H14 A1BDR 45 
A1BDR H15 H15 H 0 1 N N N N N N 148.422 149.291 111.612 -2.323  1.188  -0.826 H15 A1BDR 46 
A1BDR H16 H16 H 0 1 N N N N N N 151.232 150.690 108.252 -5.956  -1.134 -0.609 H16 A1BDR 47 
A1BDR H17 H17 H 0 1 N N N N N N 149.820 151.269 107.304 -6.041  -0.836 1.143  H17 A1BDR 48 
A1BDR H18 H18 H 0 1 N N N N N N 147.891 147.405 122.810 5.704   4.383  -0.717 H18 A1BDR 49 
A1BDR H19 H19 H 0 1 N N N N N N 148.572 146.125 121.750 6.883   3.306  -1.504 H19 A1BDR 50 
A1BDR H20 H20 H 0 1 N N N N N N 150.407 148.322 107.578 -7.393  1.201  0.732  H20 A1BDR 51 
A1BDR H21 H21 H 0 1 N N N N N N 151.277 149.341 106.382 -7.308  0.904  -1.021 H21 A1BDR 52 
A1BDR H22 H22 H 0 1 N N N N N N 148.968 151.199 105.758 -9.738  0.733  -1.111 H22 A1BDR 53 
A1BDR H23 H23 H 0 1 N N N N N N 148.141 150.148 104.560 -9.824  1.031  0.642  H23 A1BDR 54 
A1BDR H24 H24 H 0 1 N N N N N N 150.308 149.529 103.592 -10.820 -1.475 -0.789 H24 A1BDR 55 
A1BDR H25 H25 H 0 1 N N N N N N 151.150 150.553 104.804 -10.905 -1.177 0.964  H25 A1BDR 56 
A1BDR H26 H26 H 0 1 N N N N N N 150.034 152.544 103.911 -12.312 0.823  0.555  H26 A1BDR 57 
A1BDR H27 H27 H 0 1 N N N N N N 149.167 151.527 102.710 -12.227 0.526  -1.197 H27 A1BDR 58 
A1BDR H28 H28 H 0 1 N N N N N N 151.322 150.903 101.706 -13.308 -1.682 -0.875 H28 A1BDR 59 
A1BDR H29 H29 H 0 1 N N N N N N 152.165 151.964 102.886 -13.394 -1.385 0.877  H29 A1BDR 60 
A1BDR H30 H30 H 0 1 N N N N N N 147.718 148.917 120.912 7.336   2.209  0.673  H30 A1BDR 61 
A1BDR H31 H31 H 0 1 N N N N N N 146.835 147.383 120.601 6.157   3.286  1.461  H31 A1BDR 62 
A1BDR H32 H32 H 0 1 N N N N N N 150.053 147.707 117.362 3.710   -0.805 1.382  H32 A1BDR 63 
A1BDR H33 H33 H 0 1 N N N N N N 151.832 148.524 118.745 4.455   -0.041 -1.477 H33 A1BDR 64 
A1BDR H34 H34 H 0 1 N N N N N N 151.957 149.278 117.120 3.379   -1.390 -1.039 H34 A1BDR 65 
A1BDR H35 H35 H 0 1 N N N N N N 151.233 149.893 120.695 4.251   -3.365 0.069  H35 A1BDR 66 
A1BDR H36 H36 H 0 1 N N N N N N 151.326 152.115 121.735 6.207   -4.814 0.433  H36 A1BDR 67 
A1BDR H37 H37 H 0 1 N N N N N N 148.903 149.640 119.317 5.400   0.725  1.818  H37 A1BDR 68 
A1BDR H38 H38 H 0 1 N N N N N N 150.666 148.776 115.266 1.352   -0.861 0.605  H38 A1BDR 69 
A1BDR H39 H39 H 0 1 N N N N N N 148.380 149.048 106.598 -8.472  -0.967 0.937  H39 A1BDR 70 
A1BDR H41 H41 H 0 1 N N N N N N 151.874 153.008 100.788 -14.660 0.316  -1.170 H41 A1BDR 71 
A1BDR H42 H42 H 0 1 N N N N N N 150.251 152.839 100.856 -15.451 -0.802 -0.226 H42 A1BDR 72 
A1BDR H44 H44 H 0 1 N N N N N N 151.542 154.297 121.386 9.048   -4.062 1.031  H44 A1BDR 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1BDR N4  C24 SING N N 1  
A1BDR C24 C23 SING N N 2  
A1BDR C23 C22 SING N N 3  
A1BDR C22 C21 SING N N 4  
A1BDR C21 N3  SING N N 5  
A1BDR N3  C20 SING N N 6  
A1BDR C20 C19 SING N N 7  
A1BDR C19 C18 SING N N 8  
A1BDR C18 C17 SING N N 9  
A1BDR C17 C16 SING N N 10 
A1BDR C16 C15 SING N N 11 
A1BDR C15 C14 SING N N 12 
A1BDR C14 N2  SING N N 13 
A1BDR N2  C13 SING N N 14 
A1BDR C13 O3  DOUB N N 15 
A1BDR C13 C5  SING N N 16 
A1BDR C5  C6  SING N N 17 
A1BDR C5  N1  SING N N 18 
A1BDR C12 C11 DOUB Y N 19 
A1BDR C12 C7  SING Y N 20 
A1BDR C6  C7  SING N N 21 
A1BDR C11 C10 SING Y N 22 
A1BDR C7  C8  DOUB Y N 23 
A1BDR N1  C4  SING N N 24 
A1BDR O1  C4  DOUB N N 25 
A1BDR C4  C3  SING N N 26 
A1BDR C10 O2  SING N N 27 
A1BDR C10 C9  DOUB Y N 28 
A1BDR C8  C9  SING Y N 29 
A1BDR C3  C2  SING N N 30 
A1BDR C2  C1  SING N N 31 
A1BDR C11 H1  SING N N 32 
A1BDR C18 H2  SING N N 33 
A1BDR C18 H3  SING N N 34 
A1BDR C14 H4  SING N N 35 
A1BDR C14 H5  SING N N 36 
A1BDR C15 H6  SING N N 37 
A1BDR C15 H7  SING N N 38 
A1BDR C17 H8  SING N N 39 
A1BDR C17 H9  SING N N 40 
A1BDR C1  H10 SING N N 41 
A1BDR C1  H11 SING N N 42 
A1BDR C1  H12 SING N N 43 
A1BDR C12 H13 SING N N 44 
A1BDR C16 H14 SING N N 45 
A1BDR C16 H15 SING N N 46 
A1BDR C19 H16 SING N N 47 
A1BDR C19 H17 SING N N 48 
A1BDR C2  H18 SING N N 49 
A1BDR C2  H19 SING N N 50 
A1BDR C20 H20 SING N N 51 
A1BDR C20 H21 SING N N 52 
A1BDR C21 H22 SING N N 53 
A1BDR C21 H23 SING N N 54 
A1BDR C22 H24 SING N N 55 
A1BDR C22 H25 SING N N 56 
A1BDR C23 H26 SING N N 57 
A1BDR C23 H27 SING N N 58 
A1BDR C24 H28 SING N N 59 
A1BDR C24 H29 SING N N 60 
A1BDR C3  H30 SING N N 61 
A1BDR C3  H31 SING N N 62 
A1BDR C5  H32 SING N N 63 
A1BDR C6  H33 SING N N 64 
A1BDR C6  H34 SING N N 65 
A1BDR C8  H35 SING N N 66 
A1BDR C9  H36 SING N N 67 
A1BDR N1  H37 SING N N 68 
A1BDR N2  H38 SING N N 69 
A1BDR N3  H39 SING N N 70 
A1BDR N4  H41 SING N N 71 
A1BDR N4  H42 SING N N 72 
A1BDR O2  H44 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1BDR SMILES           ACDLabs              14.52   "Oc1ccc(CC(NC(=O)CCC)C(=O)NCCCCCCCNCCCCN)cc1"                                                                                                                                    
A1BDR InChI            InChI                1.06    "InChI=1S/C24H42N4O3/c1-2-10-23(30)28-22(19-20-11-13-21(29)14-12-20)24(31)27-18-8-5-3-4-7-16-26-17-9-6-15-25/h11-14,22,26,29H,2-10,15-19,25H2,1H3,(H,27,31)(H,28,30)/t22-/m1/s1" 
A1BDR InChIKey         InChI                1.06    YKCMCIWNASWOOP-JOCHJYFZSA-N                                                                                                                                                      
A1BDR SMILES_CANONICAL CACTVS               3.385   "CCCC(=O)N[C@H](Cc1ccc(O)cc1)C(=O)NCCCCCCCNCCCCN"                                                                                                                                
A1BDR SMILES           CACTVS               3.385   "CCCC(=O)N[CH](Cc1ccc(O)cc1)C(=O)NCCCCCCCNCCCCN"                                                                                                                                 
A1BDR SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCCC(=O)N[C@H](Cc1ccc(cc1)O)C(=O)NCCCCCCCNCCCCN"                                                                                                                                
A1BDR SMILES           "OpenEye OEToolkits" 3.1.0.0 "CCCC(=O)NC(Cc1ccc(cc1)O)C(=O)NCCCCCCCNCCCCN"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1BDR "SYSTEMATIC NAME" ACDLabs              14.52   "N-{7-[(4-aminobutyl)amino]heptyl}-Nalpha-butanoyl-D-tyrosinamide"                                               
A1BDR "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(2~{R})-1-[7-(4-azanylbutylamino)heptylamino]-3-(4-hydroxyphenyl)-1-oxidanylidene-propan-2-yl]butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1BDR "Create component" 2024-10-15 RCSB 
A1BDR "Initial release"  2024-12-11 RCSB 
# 
