data_9UR
# 
_chem_comp.id                                    9UR 
_chem_comp.name                                  "(2S,5R,7R,8R,10S,12aR,14R,15R,15aR,16R)-7-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-14-(6-amino-9H-purin-9-yl)-2,10,15,16-tetrahydroxyoctahydro-2H,10H,12H-5,8-methano-2lambda~5~,10lambda~5~-furo[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecine-2,10-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H24 N10 O13 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-27 
_chem_comp.pdbx_modified_date                    2022-10-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        674.411 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9UR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7SHP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9UR C2    C1  C 0 1 Y N N -9.685  -1.408 -33.922 7.859  -0.256 0.128  C2    9UR 1  
9UR N01   N1  N 0 1 N N N -8.693  1.896  -32.410 7.203  -3.605 -0.937 N01   9UR 2  
9UR C6    C2  C 0 1 Y N N -8.884  0.861  -33.401 7.010  -2.321 -0.458 C6    9UR 3  
9UR N1    N2  N 0 1 Y N N -9.484  -0.342 -32.970 8.034  -1.483 -0.328 N1    9UR 4  
9UR N3    N3  N 0 1 Y N N -9.292  -1.259 -35.324 6.678  0.205  0.482  N3    9UR 5  
9UR C4    C3  C 0 1 Y N N -8.666  0.027  -35.768 5.596  -0.563 0.391  C4    9UR 6  
9UR C5    C4  C 0 1 Y N N -8.463  1.039  -34.881 5.730  -1.877 -0.089 C5    9UR 7  
9UR N7    N4  N 0 1 Y N N -7.890  2.067  -35.526 4.494  -2.432 -0.080 N7    9UR 8  
9UR C8    C5  C 0 1 Y N N -7.744  1.668  -36.817 3.632  -1.564 0.364  C8    9UR 9  
9UR N9    N5  N 0 1 Y N N -8.238  0.419  -36.963 4.263  -0.395 0.668  N9    9UR 10 
9UR "C1'" C6  C 0 1 N N R -8.242  -0.376 -38.152 3.633  0.819  1.194  "C1'" 9UR 11 
9UR "C2'" C7  C 0 1 N N R -9.469  -0.332 -38.995 3.303  1.775  0.038  "C2'" 9UR 12 
9UR "O2'" O1  O 0 1 N N N -9.334  -1.435 -39.883 4.119  2.946  0.113  "O2'" 9UR 13 
9UR "C3'" C8  C 0 1 N N R -9.261  0.834  -39.814 1.818  2.142  0.236  "C3'" 9UR 14 
9UR "C4'" C9  C 0 1 N N R -7.767  0.781  -40.112 1.420  1.472  1.559  "C4'" 9UR 15 
9UR C16   C10 C 0 1 N N N -7.047  2.079  -40.374 0.047  0.813  1.430  C16   9UR 16 
9UR O17   O2  O 0 1 N N N -7.263  2.997  -39.353 -0.878 1.460  2.308  O17   9UR 17 
9UR P18   P1  P 0 1 N N N -7.013  4.585  -39.703 -2.233 0.764  2.829  P18   9UR 18 
9UR O19   O3  O 0 1 N N N -6.528  5.170  -38.465 -1.941 -0.777 3.193  O19   9UR 19 
9UR O20   O4  O 0 1 N N N -8.291  5.476  -40.196 -3.350 0.841  1.669  O20   9UR 20 
9UR C21   C11 C 0 1 N N R -9.604  5.013  -40.038 -3.014 1.022  0.297  C21   9UR 21 
9UR C22   C12 C 0 1 N N R -10.098 4.584  -41.359 -3.007 2.531  -0.064 C22   9UR 22 
9UR O23   O5  O 0 1 N N N -9.587  5.439  -42.373 -3.828 3.269  0.844  O23   9UR 23 
9UR C24   C13 C 0 1 N N R -11.580 4.755  -41.211 -3.602 2.571  -1.491 C24   9UR 24 
9UR C25   C14 C 0 1 N N N -12.232 3.518  -40.725 -2.453 2.584  -2.504 C25   9UR 25 
9UR O26   O6  O 0 1 N N N -12.008 3.392  -39.353 -1.333 1.888  -1.954 O26   9UR 26 
9UR P27   P2  P 0 1 N N N -11.464 1.911  -38.900 0.125  2.546  -1.793 P27   9UR 27 
9UR O28   O7  O 0 1 N N N -9.804  1.867  -39.022 1.035  1.622  -0.840 O28   9UR 28 
9UR O29   O8  O 0 1 N N N -11.862 1.714  -37.471 0.819  2.671  -3.240 O29   9UR 29 
9UR O30   O9  O 0 1 N N N -12.140 0.809  -39.607 -0.007 3.893  -1.192 O30   9UR 30 
9UR O31   O10 O 0 1 N N N -11.797 5.800  -40.194 -4.370 1.374  -1.655 O31   9UR 31 
9UR C32   C15 C 0 1 N N R -10.525 6.132  -39.625 -4.084 0.418  -0.631 C32   9UR 32 
9UR N33   N6  N 0 1 Y N N -10.604 6.186  -38.200 -3.577 -0.817 -1.234 N33   9UR 33 
9UR C34   C16 C 0 1 Y N N -11.079 5.261  -37.326 -2.971 -0.931 -2.451 C34   9UR 34 
9UR N35   N7  N 0 1 Y N N -10.953 5.732  -36.060 -2.650 -2.175 -2.663 N35   9UR 35 
9UR C36   C17 C 0 1 Y N N -10.185 7.212  -37.484 -3.619 -2.059 -0.679 C36   9UR 36 
9UR C37   C18 C 0 1 Y N N -10.394 6.949  -36.176 -3.031 -2.919 -1.599 C37   9UR 37 
9UR C38   C19 C 0 1 N N N -9.986  8.012  -35.136 -2.942 -4.342 -1.256 C38   9UR 38 
9UR N39   N8  N 0 1 N N N -9.400  9.247  -35.535 -3.429 -4.749 -0.073 N39   9UR 39 
9UR C40   C20 C 0 1 N N N -9.195  9.475  -36.938 -3.978 -3.901 0.770  C40   9UR 40 
9UR N41   N9  N 0 1 N N N -8.609  10.701 -37.420 -4.457 -4.374 1.962  N41   9UR 41 
9UR N42   N10 N 0 1 N N N -9.574  8.494  -37.931 -4.089 -2.573 0.502  N42   9UR 42 
9UR O43   O11 O 0 1 N N N -10.165 7.788  -33.992 -2.435 -5.139 -2.029 O43   9UR 43 
9UR O44   O12 O 0 1 N N N -5.961  4.742  -40.701 -2.720 1.472  4.034  O44   9UR 44 
9UR "O4'" O13 O 0 1 N N N -7.174  0.118  -38.979 2.411  0.481  1.854  "O4'" 9UR 45 
9UR H1    H1  H 0 1 N N N -10.134 -2.334 -33.593 8.718  0.392  0.219  H1    9UR 46 
9UR H2    H2  H 0 1 N N N -9.035  1.579  -31.526 8.094  -3.903 -1.182 H2    9UR 47 
9UR H3    H3  H 0 1 N N N -7.719  2.108  -32.333 6.449  -4.208 -1.028 H3    9UR 48 
9UR H4    H4  H 0 1 N N N -7.301  2.259  -37.605 2.573  -1.744 0.475  H4    9UR 49 
9UR H5    H5  H 0 1 N N N -8.038  -1.424 -37.888 4.308  1.309  1.896  H5    9UR 50 
9UR H6    H6  H 0 1 N N N -10.403 -0.320 -38.414 3.446  1.276  -0.920 H6    9UR 51 
9UR H7    H7  H 0 1 N N N -9.461  -2.245 -39.404 5.067  2.771  0.041  H7    9UR 52 
9UR H8    H8  H 0 1 N N N -9.817  0.738  -40.758 1.700  3.223  0.307  H8    9UR 53 
9UR H9    H9  H 0 1 N N N -7.632  0.142  -40.997 1.403  2.215  2.357  H9    9UR 54 
9UR H10   H10 H 0 1 N N N -5.968  1.880  -40.453 -0.304 0.904  0.402  H10   9UR 55 
9UR H11   H11 H 0 1 N N N -7.411  2.505  -41.320 0.124  -0.241 1.696  H11   9UR 56 
9UR H12   H12 H 0 1 N N N -5.652  5.512  -38.598 -1.274 -0.899 3.882  H12   9UR 57 
9UR H13   H13 H 0 1 N N N -9.662  4.187  -39.314 -2.038 0.592  0.078  H13   9UR 58 
9UR H14   H14 H 0 1 N N N -9.847  3.530  -41.549 -1.989 2.921  -0.062 H14   9UR 59 
9UR H15   H15 H 0 1 N N N -8.648  5.314  -42.450 -3.911 4.207  0.626  H15   9UR 60 
9UR H16   H16 H 0 1 N N N -12.019 5.062  -42.172 -4.228 3.447  -1.612 H16   9UR 61 
9UR H17   H17 H 0 1 N N N -13.314 3.571  -40.918 -2.772 2.092  -3.423 H17   9UR 62 
9UR H18   H18 H 0 1 N N N -11.809 2.648  -41.249 -2.171 3.614  -2.720 H18   9UR 63 
9UR H19   H19 H 0 1 N N N -12.428 0.954  -37.401 0.326  3.218  -3.867 H19   9UR 64 
9UR H20   H20 H 0 1 N N N -10.154 7.085  -40.031 -4.989 0.205  -0.062 H20   9UR 65 
9UR H21   H21 H 0 1 N N N -11.492 4.301  -37.597 -2.786 -0.115 -3.133 H21   9UR 66 
9UR H22   H22 H 0 1 N N N -8.336  11.413 -36.773 -4.388 -5.318 2.171  H22   9UR 67 
9UR H23   H23 H 0 1 N N N -8.475  10.839 -38.401 -4.865 -3.764 2.597  H23   9UR 68 
9UR H24   H24 H 0 1 N N N -9.428  8.674  -38.904 -4.503 -1.984 1.152  H24   9UR 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9UR O23   C22   SING N N 1  
9UR C22   C24   SING N N 2  
9UR C22   C21   SING N N 3  
9UR C24   C25   SING N N 4  
9UR C24   O31   SING N N 5  
9UR C25   O26   SING N N 6  
9UR O44   P18   DOUB N N 7  
9UR C16   "C4'" SING N N 8  
9UR C16   O17   SING N N 9  
9UR O20   C21   SING N N 10 
9UR O20   P18   SING N N 11 
9UR O31   C32   SING N N 12 
9UR "C4'" "C3'" SING N N 13 
9UR "C4'" "O4'" SING N N 14 
9UR C21   C32   SING N N 15 
9UR "O2'" "C2'" SING N N 16 
9UR "C3'" O28   SING N N 17 
9UR "C3'" "C2'" SING N N 18 
9UR P18   O17   SING N N 19 
9UR P18   O19   SING N N 20 
9UR C32   N33   SING N N 21 
9UR O30   P27   DOUB N N 22 
9UR O26   P27   SING N N 23 
9UR O28   P27   SING N N 24 
9UR "C2'" "C1'" SING N N 25 
9UR "O4'" "C1'" SING N N 26 
9UR P27   O29   SING N N 27 
9UR N33   C36   SING Y N 28 
9UR N33   C34   SING Y N 29 
9UR "C1'" N9    SING N N 30 
9UR N42   C36   SING N N 31 
9UR N42   C40   SING N N 32 
9UR C36   C37   DOUB Y N 33 
9UR N41   C40   SING N N 34 
9UR C34   N35   DOUB Y N 35 
9UR N9    C8    SING Y N 36 
9UR N9    C4    SING Y N 37 
9UR C40   N39   DOUB N N 38 
9UR C8    N7    DOUB Y N 39 
9UR C37   N35   SING Y N 40 
9UR C37   C38   SING N N 41 
9UR C4    N3    DOUB Y N 42 
9UR C4    C5    SING Y N 43 
9UR N39   C38   SING N N 44 
9UR N7    C5    SING Y N 45 
9UR N3    C2    SING Y N 46 
9UR C38   O43   DOUB N N 47 
9UR C5    C6    DOUB Y N 48 
9UR C2    N1    DOUB Y N 49 
9UR C6    N1    SING Y N 50 
9UR C6    N01   SING N N 51 
9UR C2    H1    SING N N 52 
9UR N01   H2    SING N N 53 
9UR N01   H3    SING N N 54 
9UR C8    H4    SING N N 55 
9UR "C1'" H5    SING N N 56 
9UR "C2'" H6    SING N N 57 
9UR "O2'" H7    SING N N 58 
9UR "C3'" H8    SING N N 59 
9UR "C4'" H9    SING N N 60 
9UR C16   H10   SING N N 61 
9UR C16   H11   SING N N 62 
9UR O19   H12   SING N N 63 
9UR C21   H13   SING N N 64 
9UR C22   H14   SING N N 65 
9UR O23   H15   SING N N 66 
9UR C24   H16   SING N N 67 
9UR C25   H17   SING N N 68 
9UR C25   H18   SING N N 69 
9UR O29   H19   SING N N 70 
9UR C32   H20   SING N N 71 
9UR C34   H21   SING N N 72 
9UR N41   H22   SING N N 73 
9UR N41   H23   SING N N 74 
9UR N42   H24   SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9UR SMILES           ACDLabs              12.01 "Nc1ncnc2c1ncn2C1OC2COP(=O)(O)OC3C(OC(COP(=O)(O)OC2C1O)C3O)n1cnc2c1NC(N)=NC2=O"                                                                                                                                                                                                                
9UR InChI            InChI                1.03  "InChI=1S/C20H24N10O13P2/c21-14-8-15(24-3-23-14)29(4-25-8)18-11(32)12-7(41-18)2-39-45(36,37)43-13-10(31)6(1-38-44(34,35)42-12)40-19(13)30-5-26-9-16(30)27-20(22)28-17(9)33/h3-7,10-13,18-19,31-32H,1-2H2,(H,34,35)(H,36,37)(H2,21,23,24)(H3,22,27,28,33)/t6-,7-,10-,11-,12+,13-,18-,19-/m1/s1" 
9UR InChIKey         InChI                1.03  XRILCFTWUCUKJR-BPNBKBNUSA-N                                                                                                                                                                                                                                                                    
9UR SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@@H]4CO[P](O)(=O)O[C@@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]3[C@@H]4O)n6cnc7c(N)ncnc67)c2N1"                                                                                                                                                                
9UR SMILES           CACTVS               3.385 "NC1=NC(=O)c2ncn([CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6cnc7c(N)ncnc67)c2N1"                                                                                                                                                                                
9UR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H]([C@@H](COP(=O)(O4)O)O[C@H]5n6cnc7c6NC(=NC7=O)N)O)O)O)N"                                                                                                                                                                 
9UR SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(C(COP(=O)(O4)O)OC5n6cnc7c6NC(=NC7=O)N)O)O)O)N"                                                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9UR "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,5R,7R,8R,10S,12aR,14R,15R,15aR,16R)-7-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-14-(6-amino-9H-purin-9-yl)-2,10,15,16-tetrahydroxyoctahydro-2H,10H,12H-5,8-methano-2lambda~5~,10lambda~5~-furo[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecine-2,10-dione" 
9UR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-2-azanyl-3~{H}-purin-6-one"              
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9UR "Create component" 2021-10-27 RCSB 
9UR "Initial release"  2022-10-19 RCSB 
# 
