data_9MR
#

_chem_comp.id                                   9MR
_chem_comp.name                                 "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H23 N O8"
_chem_comp.mon_nstd_parent_comp_id              BGC
_chem_comp.pdbx_synonyms                        
;CELLOBIOSE-LIKE ISOFAGOMINE; (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucoside;
(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl D-glucoside; (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl
glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-02-26
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       309.313
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9MR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  9MR  "CELLOBIOSE-LIKE ISOFAGOMINE"                                            PDB  ?  
2  9MR  "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucoside"  PDB  ?  
3  9MR  "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl D-glucoside"       PDB  ?  
4  9MR  "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl glucoside"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9MR  O2    O2B   O  0  1  N  N  N  28.951  61.125  -25.752   0.211   0.014  -7.247  O2    9MR   1  
9MR  C2    C2B   C  0  1  N  N  R  29.333  59.759  -25.735  -0.961  -0.115  -6.444  C2    9MR   2  
9MR  C3    C3B   C  0  1  N  N  S  30.800  59.632  -26.152  -2.198  -0.026  -7.338  C3    9MR   3  
9MR  O3    O3B   O  0  1  N  N  N  31.614  60.320  -25.194  -2.274  -1.195  -8.156  O3    9MR   4  
9MR  C4    C4B   C  0  1  N  N  S  31.190  58.157  -26.225  -3.475   0.095  -6.507  C4    9MR   5  
9MR  O4    O4B   O  0  1  N  N  N  32.513  58.053  -26.781  -4.568   0.404  -7.367  O4    9MR   6  
9MR  C5    C5B   C  0  1  N  N  R  30.190  57.380  -27.091  -3.334   1.194  -5.452  C5    9MR   7  
9MR  C6    C6B   C  0  1  N  N  N  30.476  55.889  -27.017  -4.551   1.255  -4.534  C6    9MR   8  
9MR  O6    O6B   O  0  1  N  N  N  30.375  55.419  -25.657  -4.345   2.282  -3.581  O6    9MR   9  
9MR  O5    O5B   O  0  1  N  N  N  28.847  57.563  -26.588  -2.190   0.940  -4.634  O5    9MR  10  
9MR  C1    C1B   C  0  1  N  N  R  28.436  58.934  -26.652  -0.971   0.976  -5.373  C1    9MR  11  
9MR  O1    O3A   O  0  1  N  N  N  27.111  58.969  -26.131   0.131   0.740  -4.497  O1    9MR  12  
9MR  C3A   C3A   C  0  1  N  N  R  26.136  58.394  -27.007   0.195   1.724  -3.466  C3A   9MR  13  
9MR  C4A   C4A   C  0  1  N  N  R  25.190  57.468  -26.238   0.053   1.034  -2.107  C4A   9MR  14  
9MR  O4A   O4A   O  0  1  N  N  N  25.931  56.462  -25.555  -1.280   0.538  -1.990  O4A   9MR  15  
9MR  C5M   C5M   C  0  1  N  N  N  24.215  56.800  -27.197   0.327   2.003  -0.958  C5M   9MR  16  
9MR  N5A   N5A   N  0  1  N  N  N  23.441  57.817  -27.940   1.635   2.640  -1.092  N5A   9MR  17  
9MR  C1A   C1A   C  0  1  N  N  N  24.309  58.795  -28.633   1.737   3.384  -2.348  C1A   9MR  18  
9MR  C2A   C2A   C  0  1  N  N  R  25.248  59.463  -27.632   1.536   2.466  -3.562  C2A   9MR  19  
9MR  C6A   C6A   C  0  1  N  N  N  26.064  60.588  -28.294   1.634   3.270  -4.861  C6A   9MR  20  
9MR  O6A   O6A   O  0  1  N  N  N  26.786  60.118  -29.441   2.913   3.872  -4.917  O6A   9MR  21  
9MR  HO2   HO2B  H  0  1  N  Y  N  28.866  61.442  -24.860   0.601   0.874  -7.029  HO2   9MR  22  
9MR  H2    H2B   H  0  1  N  N  N  29.216  59.368  -24.713  -0.907  -1.104  -5.974  H2    9MR  23  
9MR  H3    H3B   H  0  1  N  N  N  30.950  60.080  -27.145  -2.113   0.819  -8.032  H3    9MR  24  
9MR  HO3   HO3B  H  0  1  N  Y  N  32.477  60.472  -25.562  -3.146  -1.178  -8.577  HO3   9MR  25  
9MR  H4    H4B   H  0  1  N  N  N  31.176  57.724  -25.214  -3.694  -0.867  -6.026  H4    9MR  26  
9MR  HO4   HO4B  H  0  1  N  Y  N  32.458  58.030  -27.729  -4.948   1.236  -7.044  HO4   9MR  27  
9MR  H5    H5B   H  0  1  N  N  N  30.285  57.753  -28.121  -3.228   2.176  -5.930  H5    9MR  28  
9MR  H61   H6B1  H  0  1  N  N  N  29.745  55.351  -27.639  -4.675   0.304  -4.016  H61   9MR  29  
9MR  H62   H6B2  H  0  1  N  N  N  31.498  55.705  -27.381  -5.445   1.477  -5.116  H62   9MR  30  
9MR  HO6   HO6B  H  0  1  N  Y  N  30.353  54.469  -25.651  -3.882   1.882  -2.825  HO6   9MR  31  
9MR  H1    H1B   H  0  1  N  N  N  28.492  59.330  -27.677  -0.829   1.969  -5.818  H1    9MR  32  
9MR  H3A   H3A   H  0  1  N  N  N  26.703  57.850  -27.776  -0.643   2.412  -3.631  H3A   9MR  33  
9MR  H4A   H4A   H  0  1  N  N  N  24.633  58.073  -25.507   0.722   0.167  -2.049  H4A   9MR  34  
9MR  HO4A  HO4A  H  0  0  N  N  N  26.096  55.735  -26.144  -1.605   0.410  -2.894  HO4A  9MR  35  
9MR  H5M1  H5M1  H  0  0  N  N  N  23.522  56.167  -26.623  -0.463   2.763  -0.897  H5M1  9MR  36  
9MR  H5M2  H5M2  H  0  0  N  N  N  24.783  56.190  -27.915   0.282   1.462  -0.006  H5M2  9MR  37  
9MR  HN5A  HN5A  H  0  0  N  N  N  22.862  58.311  -27.291   2.357   1.920  -1.074  HN5A  9MR  38  
9MR  H1A1  H1A1  H  0  0  N  N  N  24.904  58.274  -29.398   2.727   3.850  -2.398  H1A1  9MR  39  
9MR  H1A2  H1A2  H  0  0  N  N  N  23.680  59.564  -29.106   1.006   4.202  -2.355  H1A2  9MR  40  
9MR  H2A   H2A   H  0  1  N  N  N  24.661  59.944  -26.836   2.348   1.726  -3.592  H2A   9MR  41  
9MR  H6A1  H6A1  H  0  0  N  N  N  26.784  60.980  -27.560   0.868   4.042  -4.873  H6A1  9MR  42  
9MR  H6A2  H6A2  H  0  0  N  N  N  25.365  61.370  -28.625   1.507   2.606  -5.714  H6A2  9MR  43  
9MR  HO6A  HO6A  H  0  0  N  N  N  26.188  60.014  -30.172   3.331   3.582  -5.746  HO6A  9MR  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9MR  O2   C2    SING  N  N   1  
9MR  O2   HO2   SING  N  N   2  
9MR  C2   C1    SING  N  N   3  
9MR  C2   C3    SING  N  N   4  
9MR  C2   H2    SING  N  N   5  
9MR  C3   C4    SING  N  N   6  
9MR  C3   O3    SING  N  N   7  
9MR  C3   H3    SING  N  N   8  
9MR  O3   HO3   SING  N  N   9  
9MR  C4   C5    SING  N  N  10  
9MR  C4   O4    SING  N  N  11  
9MR  C4   H4    SING  N  N  12  
9MR  O4   HO4   SING  N  N  13  
9MR  C5   C6    SING  N  N  14  
9MR  C5   O5    SING  N  N  15  
9MR  C5   H5    SING  N  N  16  
9MR  C6   O6    SING  N  N  17  
9MR  C6   H61   SING  N  N  18  
9MR  C6   H62   SING  N  N  19  
9MR  O6   HO6   SING  N  N  20  
9MR  O5   C1    SING  N  N  21  
9MR  C1   O1    SING  N  N  22  
9MR  C1   H1    SING  N  N  23  
9MR  O1   C3A   SING  N  N  24  
9MR  C3A  C2A   SING  N  N  25  
9MR  C3A  C4A   SING  N  N  26  
9MR  C3A  H3A   SING  N  N  27  
9MR  C4A  C5M   SING  N  N  28  
9MR  C4A  O4A   SING  N  N  29  
9MR  C4A  H4A   SING  N  N  30  
9MR  O4A  HO4A  SING  N  N  31  
9MR  C5M  N5A   SING  N  N  32  
9MR  C5M  H5M1  SING  N  N  33  
9MR  C5M  H5M2  SING  N  N  34  
9MR  N5A  C1A   SING  N  N  35  
9MR  N5A  HN5A  SING  N  N  36  
9MR  C1A  C2A   SING  N  N  37  
9MR  C1A  H1A1  SING  N  N  38  
9MR  C1A  H1A2  SING  N  N  39  
9MR  C2A  C6A   SING  N  N  40  
9MR  C2A  H2A   SING  N  N  41  
9MR  C6A  O6A   SING  N  N  42  
9MR  C6A  H6A1  SING  N  N  43  
9MR  C6A  H6A2  SING  N  N  44  
9MR  O6A  HO6A  SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9MR  SMILES            ACDLabs               10.04  "O(C1C(O)CNCC1CO)C2OC(C(O)C(O)C2O)CO"  
9MR  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1CNC[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O"  
9MR  SMILES            CACTVS                3.341  "OC[CH]1CNC[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O"  
9MR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@@H]([C@H]([C@@H](CN1)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)CO"  
9MR  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C(C(C(CN1)O)OC2C(C(C(C(O2)CO)O)O)O)CO"  
9MR  InChI             InChI                 1.03   "InChI=1S/C12H23NO8/c14-3-5-1-13-2-6(16)11(5)21-12-10(19)9(18)8(17)7(4-15)20-12/h5-19H,1-4H2/t5-,6-,7-,8-,9+,10-,11-,12+/m1/s1"  
9MR  InChIKey          InChI                 1.03   LEOSSOWHBSKZSO-WUYFHPBOSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9MR  "SYSTEMATIC NAME"  ACDLabs               10.04  "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranoside"  
9MR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5S,6R)-2-[(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol"  
#
_pdbx_chem_comp_related.comp_id            9MR
_pdbx_chem_comp_related.related_comp_id    BGC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  9MR  C1   BGC  C1   "Carbohydrate core"  
 2  9MR  C2   BGC  C2   "Carbohydrate core"  
 3  9MR  C3   BGC  C3   "Carbohydrate core"  
 4  9MR  C4   BGC  C4   "Carbohydrate core"  
 5  9MR  C5   BGC  C5   "Carbohydrate core"  
 6  9MR  C6   BGC  C6   "Carbohydrate core"  
 7  9MR  O2   BGC  O2   "Carbohydrate core"  
 8  9MR  O1   BGC  O1   "Carbohydrate core"  
 9  9MR  O3   BGC  O3   "Carbohydrate core"  
10  9MR  O4   BGC  O4   "Carbohydrate core"  
11  9MR  O5   BGC  O5   "Carbohydrate core"  
12  9MR  O6   BGC  O6   "Carbohydrate core"  
13  9MR  H1   BGC  H1   "Carbohydrate core"  
14  9MR  H2   BGC  H2   "Carbohydrate core"  
15  9MR  H3   BGC  H3   "Carbohydrate core"  
16  9MR  H4   BGC  H4   "Carbohydrate core"  
17  9MR  H5   BGC  H5   "Carbohydrate core"  
18  9MR  H61  BGC  H61  "Carbohydrate core"  
19  9MR  H62  BGC  H62  "Carbohydrate core"  
20  9MR  HO2  BGC  HO2  "Carbohydrate core"  
21  9MR  HO3  BGC  HO3  "Carbohydrate core"  
22  9MR  HO4  BGC  HO4  "Carbohydrate core"  
23  9MR  HO6  BGC  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
9MR  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
9MR  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
9MR  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
9MR  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9MR  "Create component"          2007-02-26  RCSB  
9MR  "Modify descriptor"         2011-06-04  RCSB  
9MR  "Other modification"        2020-07-03  RCSB  
9MR  "Modify parent residue"     2020-07-17  RCSB  
9MR  "Modify name"               2020-07-17  RCSB  
9MR  "Modify synonyms"           2020-07-17  RCSB  
9MR  "Modify internal type"      2020-07-17  RCSB  
9MR  "Modify linking type"       2020-07-17  RCSB  
9MR  "Modify atom id"            2020-07-17  RCSB  
9MR  "Modify component atom id"  2020-07-17  RCSB  
9MR  "Modify leaving atom flag"  2020-07-17  RCSB  
##
