data_6UR
#

_chem_comp.id                                   6UR
_chem_comp.name                                 
;[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[2-(1~{H}-indol-3-yl)ethyl]p
hosphonamidic acid
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H24 N7 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        TpAd
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-06-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       489.422
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6UR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KLY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6UR  C1     C1   C  0  1  N  N  N  -31.569  6.719  -23.294   4.205   1.808   0.075  C1     6UR   1  
6UR  C2     C2   C  0  1  Y  N  N  -26.350  5.103  -32.566  -6.525  -2.350   0.362  C2     6UR   2  
6UR  C3     C3   C  0  1  N  N  N  -32.127  7.968  -23.968   4.753   0.855  -0.988  C3     6UR   3  
6UR  C4     C4   C  0  1  Y  N  N  -28.354  5.245  -31.406  -4.940  -0.688   0.288  C4     6UR   4  
6UR  C5     C5   C  0  1  Y  N  N  -29.097  4.931  -32.624  -5.917   0.246   0.673  C5     6UR   5  
6UR  C6     C6   C  0  1  Y  N  N  -28.301  4.713  -33.837  -7.223  -0.218   0.903  C6     6UR   6  
6UR  C7     C7   C  0  1  Y  N  N  -33.574  8.241  -23.625   5.516  -0.260  -0.319  C7     6UR   7  
6UR  N1     N1   N  0  1  Y  N  N  -26.958  4.814  -33.734  -7.476  -1.511   0.731  N1     6UR   8  
6UR  N3     N2   N  0  1  Y  N  N  -27.002  5.325  -31.410  -5.286  -1.963   0.146  N3     6UR   9  
6UR  C8     C8   C  0  1  Y  N  N  -30.502  5.208  -30.983  -4.051   1.325   0.433  C8     6UR  10  
6UR  "C1'"  C9   C  0  1  N  N  R  -28.961  5.721  -29.071  -2.472  -0.521  -0.247  "C1'"  6UR  11  
6UR  "C2'"  C10  C  0  1  N  N  R  -29.833  6.816  -28.487  -2.354  -0.599  -1.791  "C2'"  6UR  12  
6UR  "C3'"  C11  C  0  1  N  N  S  -29.743  6.514  -26.992  -0.821  -0.555  -2.002  "C3'"  6UR  13  
6UR  "C4'"  C12  C  0  1  N  N  R  -29.341  5.032  -26.951  -0.278   0.067  -0.701  "C4'"  6UR  14  
6UR  "C5'"  C13  C  0  1  N  N  N  -30.330  4.152  -26.215   0.505   1.342  -1.021  "C5'"  6UR  15  
6UR  O3P    O1   O  0  1  N  N  N  -32.115  2.894  -24.210   1.282   4.280  -0.474  O3P    6UR  16  
6UR  P      P1   P  0  1  N  N  N  -31.254  4.042  -23.738   2.001   3.182   0.209  P      6UR  17  
6UR  N1P    N3   N  0  1  N  N  N  -32.231  5.481  -23.684   3.462   2.894  -0.577  N1P    6UR  18  
6UR  O2P    O2   O  0  1  N  N  N  -30.511  3.882  -22.451   2.287   3.597   1.738  O2P    6UR  19  
6UR  "O5'"  O3   O  0  1  N  N  N  -30.126  4.375  -24.827   1.102   1.847   0.175  "O5'"  6UR  20  
6UR  "O3'"  O4   O  0  1  N  N  N  -28.771  7.325  -26.301  -0.303  -1.875  -2.179  "O3'"  6UR  21  
6UR  "O2'"  O5   O  0  1  N  N  N  -29.384  8.122  -28.873  -2.902  -1.824  -2.283  "O2'"  6UR  22  
6UR  "O4'"  O6   O  0  1  N  N  N  -29.296  4.581  -28.299  -1.411   0.384   0.126  "O4'"  6UR  23  
6UR  N9     N4   N  0  1  Y  N  N  -29.275  5.409  -30.470  -3.775   0.022   0.144  N9     6UR  24  
6UR  N7     N5   N  0  1  Y  N  N  -30.407  4.929  -32.306  -5.309   1.454   0.743  N7     6UR  25  
6UR  N6     N6   N  0  1  N  N  N  -28.911  4.419  -35.014  -8.226   0.654   1.289  N6     6UR  26  
6UR  C9     C14  C  0  1  Y  N  N  -34.128  8.674  -22.322   4.952  -1.499   0.222  C9     6UR  27  
6UR  C10    C15  C  0  1  Y  N  N  -35.582  8.821  -22.525   6.039  -2.226   0.742  C10    6UR  28  
6UR  N11    N7   N  0  1  Y  N  N  -35.821  8.512  -23.813   7.171  -1.473   0.526  N11    6UR  29  
6UR  C12    C16  C  0  1  Y  N  N  -34.675  8.179  -24.475   6.841  -0.308  -0.112  C12    6UR  30  
6UR  C13    C17  C  0  1  Y  N  N  -33.544  8.909  -21.087   3.661  -2.024   0.302  C13    6UR  31  
6UR  C14    C18  C  0  1  Y  N  N  -34.376  9.307  -20.038   3.459  -3.243   0.885  C14    6UR  32  
6UR  C15    C19  C  0  1  Y  N  N  -35.756  9.451  -20.217   4.528  -3.964   1.399  C15    6UR  33  
6UR  C16    C20  C  0  1  Y  N  N  -36.368  9.212  -21.445   5.810  -3.465   1.331  C16    6UR  34  
6UR  H1     H1   H  0  1  N  N  N  -30.503  6.636  -23.552   3.539   1.262   0.744  H1     6UR  35  
6UR  H2     H2   H  0  1  N  N  N  -31.675  6.838  -22.206   5.032   2.227   0.649  H2     6UR  36  
6UR  H3     H3   H  0  1  N  N  N  -25.272  5.160  -32.558  -6.773  -3.394   0.238  H3     6UR  37  
6UR  H4     H4   H  0  1  N  N  N  -32.045  7.842  -25.058   3.926   0.436  -1.562  H4     6UR  38  
6UR  H5     H5   H  0  1  N  N  N  -31.525  8.833  -23.652   5.419   1.400  -1.657  H5     6UR  39  
6UR  H6     H6   H  0  1  N  N  N  -31.425  5.261  -30.424  -3.333   2.131   0.408  H6     6UR  40  
6UR  H7     H7   H  0  1  N  N  N  -27.899  5.985  -28.960  -2.314  -1.503   0.200  H7     6UR  41  
6UR  H8     H8   H  0  1  N  N  N  -30.870  6.661  -28.818  -2.836   0.257  -2.261  H8     6UR  42  
6UR  H9     H9   H  0  1  N  N  N  -30.737  6.632  -26.536  -0.572   0.072  -2.858  H9     6UR  43  
6UR  H10    H10  H  0  1  N  N  N  -28.352  4.941  -26.479   0.368  -0.647  -0.190  H10    6UR  44  
6UR  H11    H11  H  0  1  N  N  N  -31.359  4.423  -26.495   1.285   1.116  -1.749  H11    6UR  45  
6UR  H12    H12  H  0  1  N  N  N  -30.150  3.095  -26.459  -0.172   2.090  -1.434  H12    6UR  46  
6UR  H13    H13  H  0  1  N  N  N  -32.614  5.619  -24.597   3.313   2.694  -1.554  H13    6UR  47  
6UR  H14    H14  H  0  1  N  N  N  -30.694  3.025  -22.083   2.757   2.923   2.247  H14    6UR  48  
6UR  H15    H15  H  0  1  N  N  N  -28.761  7.092  -25.380  -0.656  -2.336  -2.952  H15    6UR  49  
6UR  H16    H16  H  0  1  N  N  N  -29.953  8.779  -28.489  -2.852  -1.920  -3.244  H16    6UR  50  
6UR  H17    H17  H  0  1  N  N  N  -28.220  4.303  -35.728  -9.126   0.323   1.438  H17    6UR  51  
6UR  H18    H18  H  0  1  N  N  N  -29.435  3.573  -34.916  -8.030   1.596   1.412  H18    6UR  52  
6UR  H19    H19  H  0  1  N  N  N  -36.728  8.525  -24.234   8.070  -1.732   0.784  H19    6UR  53  
6UR  H20    H20  H  0  1  N  N  N  -34.628  7.904  -25.518   7.542   0.461  -0.400  H20    6UR  54  
6UR  H21    H21  H  0  1  N  N  N  -32.481  8.788  -20.941   2.825  -1.469  -0.096  H21    6UR  55  
6UR  H22    H22  H  0  1  N  N  N  -33.945  9.508  -19.068   2.460  -3.649   0.947  H22    6UR  56  
6UR  H23    H23  H  0  1  N  N  N  -36.364  9.756  -19.379   4.353  -4.926   1.858  H23    6UR  57  
6UR  H24    H24  H  0  1  N  N  N  -37.436  9.328  -21.557   6.635  -4.034   1.734  H24    6UR  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6UR  N6     C6     SING  N  N   1  
6UR  C6     N1     DOUB  Y  N   2  
6UR  C6     C5     SING  Y  N   3  
6UR  N1     C2     SING  Y  N   4  
6UR  C5     N7     SING  Y  N   5  
6UR  C5     C4     DOUB  Y  N   6  
6UR  C2     N3     DOUB  Y  N   7  
6UR  N7     C8     DOUB  Y  N   8  
6UR  N3     C4     SING  Y  N   9  
6UR  C4     N9     SING  Y  N  10  
6UR  C8     N9     SING  Y  N  11  
6UR  N9     "C1'"  SING  N  N  12  
6UR  "C1'"  "C2'"  SING  N  N  13  
6UR  "C1'"  "O4'"  SING  N  N  14  
6UR  "O2'"  "C2'"  SING  N  N  15  
6UR  "C2'"  "C3'"  SING  N  N  16  
6UR  "O4'"  "C4'"  SING  N  N  17  
6UR  "C3'"  "C4'"  SING  N  N  18  
6UR  "C3'"  "O3'"  SING  N  N  19  
6UR  "C4'"  "C5'"  SING  N  N  20  
6UR  "C5'"  "O5'"  SING  N  N  21  
6UR  "O5'"  P      SING  N  N  22  
6UR  C12    N11    SING  Y  N  23  
6UR  C12    C7     DOUB  Y  N  24  
6UR  O3P    P      DOUB  N  N  25  
6UR  C3     C7     SING  N  N  26  
6UR  C3     C1     SING  N  N  27  
6UR  N11    C10    SING  Y  N  28  
6UR  P      N1P    SING  N  N  29  
6UR  P      O2P    SING  N  N  30  
6UR  N1P    C1     SING  N  N  31  
6UR  C7     C9     SING  Y  N  32  
6UR  C10    C9     DOUB  Y  N  33  
6UR  C10    C16    SING  Y  N  34  
6UR  C9     C13    SING  Y  N  35  
6UR  C16    C15    DOUB  Y  N  36  
6UR  C13    C14    DOUB  Y  N  37  
6UR  C15    C14    SING  Y  N  38  
6UR  C1     H1     SING  N  N  39  
6UR  C1     H2     SING  N  N  40  
6UR  C2     H3     SING  N  N  41  
6UR  C3     H4     SING  N  N  42  
6UR  C3     H5     SING  N  N  43  
6UR  C8     H6     SING  N  N  44  
6UR  "C1'"  H7     SING  N  N  45  
6UR  "C2'"  H8     SING  N  N  46  
6UR  "C3'"  H9     SING  N  N  47  
6UR  "C4'"  H10    SING  N  N  48  
6UR  "C5'"  H11    SING  N  N  49  
6UR  "C5'"  H12    SING  N  N  50  
6UR  N1P    H13    SING  N  N  51  
6UR  O2P    H14    SING  N  N  52  
6UR  "O3'"  H15    SING  N  N  53  
6UR  "O2'"  H16    SING  N  N  54  
6UR  N6     H17    SING  N  N  55  
6UR  N6     H18    SING  N  N  56  
6UR  N11    H19    SING  N  N  57  
6UR  C12    H20    SING  N  N  58  
6UR  C13    H21    SING  N  N  59  
6UR  C14    H22    SING  N  N  60  
6UR  C15    H23    SING  N  N  61  
6UR  C16    H24    SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6UR  InChI             InChI                 1.03   "InChI=1S/C20H24N7O6P/c21-18-15-19(24-9-23-18)27(10-25-15)20-17(29)16(28)14(33-20)8-32-34(30,31)26-6-5-11-7-22-13-4-2-1-3-12(11)13/h1-4,7,9-10,14,16-17,20,22,28-29H,5-6,8H2,(H2,21,23,24)(H2,26,30,31)/t14-,16-,17-,20-/m1/s1"  
6UR  InChIKey          InChI                 1.03   QUYHGTZYKXLUHM-WVSUBDOOSA-N  
6UR  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)NCCc4c[nH]c5ccccc45)[C@@H](O)[C@H]3O"  
6UR  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)NCCc4c[nH]c5ccccc45)[CH](O)[CH]3O"  
6UR  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "c1ccc2c(c1)c(c[nH]2)CCNP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"  
6UR  SMILES            "OpenEye OEToolkits"  2.0.5  "c1ccc2c(c1)c(c[nH]2)CCNP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          6UR
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[2-(1~{H}-indol-3-yl)ethyl]phosphonamidic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6UR  "Create component"  2016-06-28  RCSB  
6UR  "Initial release"   2017-06-28  RCSB  
6UR  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6UR
_pdbx_chem_comp_synonyms.name        TpAd
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
