data_6JR
#

_chem_comp.id                                   6JR
_chem_comp.name                                 "3-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-6-phenyl-3,4-dihydro-9H-imidazo[1,2-a]purin-9-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H16 N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        PET-cGMP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-04-19
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       445.323
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6JR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5JD7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6JR  N12   N1   N  0  1  Y  N  N   -8.169   5.708   9.708   3.260  -1.257  -0.209  N12   6JR   1  
6JR  C15   C1   C  0  1  N  N  R   -3.219   9.042  10.972  -4.074  -0.164   1.082  C15   6JR   2  
6JR  C20   C2   C  0  1  Y  N  N   -5.307   5.855  13.375  -1.066  -2.585   0.067  C20   6JR   3  
6JR  C21   C3   C  0  1  Y  N  N   -6.898   5.559  11.912   1.065  -2.279  -0.174  C21   6JR   4  
6JR  C22   C4   C  0  1  N  N  N   -8.123   5.226  11.050   2.502  -2.353  -0.419  C22   6JR   5  
6JR  C24   C5   C  0  1  Y  N  N   -9.109   5.585   8.713   4.610  -1.040  -0.356  C24   6JR   6  
6JR  C26   C6   C  0  1  Y  N  N   -9.314   6.417   6.244   6.157   0.932  -0.009  C26   6JR   7  
6JR  C28   C7   C  0  1  Y  N  N   -8.487   6.855   5.131   6.254   2.268   0.376  C28   6JR   8  
6JR  P01   P1   P  0  1  N  N  N   -1.962   9.345   8.128  -6.236   1.138  -0.457  P01   6JR   9  
6JR  O02   O1   O  0  1  N  N  N   -4.132   8.695  11.781  -2.957  -0.984   1.416  O02   6JR  10  
6JR  O03   O2   O  0  1  N  N  N   -1.865   7.871   8.939  -4.633   1.342  -0.682  O03   6JR  11  
6JR  O04   O3   O  0  1  N  N  N   -2.182  10.540   9.307  -6.412   0.222   0.872  O04   6JR  12  
6JR  O05   O4   O  0  1  N  N  N   -1.787   6.244  11.161  -2.084   1.926  -0.107  O05   6JR  13  
6JR  O06   O5   O  0  1  N  N  N   -3.088   9.388   7.165  -6.880   0.390  -1.730  O06   6JR  14  
6JR  O07   O6   O  0  1  N  N  N   -0.606   9.662   7.487  -6.890   2.450  -0.256  O07   6JR  15  
6JR  O08   O7   O  0  1  N  N  N   -9.050   4.560  11.474   3.010  -3.389  -0.809  O08   6JR  16  
6JR  N09   N2   N  0  1  Y  N  N   -4.934   6.491  12.226  -0.813  -1.289   0.415  N09   6JR  17  
6JR  N10   N3   N  0  1  Y  N  N   -6.511   5.271  13.190   0.045  -3.167  -0.280  N10   6JR  18  
6JR  N11   N4   N  0  1  N  N  N   -5.988   6.763   9.995   1.343   0.006   0.456  N11   6JR  19  
6JR  N13   N5   N  0  1  Y  N  N   -7.399   6.823   7.889   3.656   0.808   0.342  N13   6JR  20  
6JR  C14   C8   C  0  1  N  N  S   -2.983   7.711   9.877  -3.797   0.217  -0.397  C14   6JR  21  
6JR  C16   C9   C  0  1  N  N  R   -3.082   6.668  10.649  -2.297   0.533  -0.341  C16   6JR  22  
6JR  C17   C10  C  0  1  N  N  R   -3.904   7.116  12.003  -1.802  -0.306   0.864  C17   6JR  23  
6JR  C18   C11  C  0  1  N  N  N   -3.415  10.319  10.206  -5.442  -0.809   1.179  C18   6JR  24  
6JR  C19   C12  C  0  1  Y  N  N   -5.921   6.299  11.360   0.523  -1.078   0.270  C19   6JR  25  
6JR  C23   C13  C  0  1  Y  N  N   -7.136   6.465   9.181   2.701  -0.089   0.221  C23   6JR  26  
6JR  C25   C14  C  0  1  Y  N  N   -8.627   6.261   7.613   4.840   0.250  -0.006  C25   6JR  27  
6JR  C27   C15  C  0  1  Y  N  N  -10.808   6.120   6.071   7.302   0.241  -0.401  C27   6JR  28  
6JR  C29   C16  C  0  1  Y  N  N  -11.411   6.298   4.713   8.524   0.882  -0.407  C29   6JR  29  
6JR  C30   C17  C  0  1  Y  N  N   -9.100   7.034   3.769   7.482   2.898   0.371  C30   6JR  30  
6JR  C31   C18  C  0  1  Y  N  N  -10.582   6.750   3.577   8.614   2.208  -0.024  C31   6JR  31  
6JR  H151  H1   H  0  0  N  N  N   -2.260   9.134  11.503  -4.054   0.743   1.688  H151  6JR  32  
6JR  H201  H3   H  0  0  N  N  N   -4.731   5.824  14.288  -2.038  -3.054   0.078  H201  6JR  33  
6JR  H241  H4   H  0  0  N  N  N  -10.049   5.058   8.780   5.346  -1.759  -0.685  H241  6JR  34  
6JR  H281  H5   H  0  0  N  N  N   -7.436   7.051   5.282   5.370   2.810   0.677  H281  6JR  35  
6JR  H051  H6   H  0  0  N  N  N   -1.900   5.483  11.718  -1.152   2.179  -0.062  H051  6JR  36  
6JR  H061  H7   H  0  0  N  N  N   -2.759   9.610   6.302  -7.832   0.239  -1.657  H061  6JR  37  
6JR  H3    H9   H  0  1  N  N  N   -5.232   7.295   9.613   0.967   0.845   0.765  H3    6JR  38  
6JR  H141  H10  H  0  0  N  N  N   -3.889   7.743   9.255  -4.013  -0.614  -1.070  H141  6JR  39  
6JR  H161  H12  H  0  0  N  N  N   -3.614   5.826  10.183  -1.803   0.218  -1.260  H161  6JR  40  
6JR  H171  H13  H  0  0  N  N  N   -3.188   7.023  12.833  -1.360   0.347   1.617  H171  6JR  41  
6JR  H181  H14  H  0  0  N  N  N   -4.320  10.245   9.585  -5.523  -1.623   0.459  H181  6JR  42  
6JR  H182  H15  H  0  0  N  N  N   -3.520  11.160  10.907  -5.606  -1.185   2.189  H182  6JR  43  
6JR  H271  H16  H  0  0  N  N  N  -11.409   5.791   6.906   7.233  -0.795  -0.700  H271  6JR  44  
6JR  H291  H17  H  0  0  N  N  N  -12.461   6.094   4.562   9.412   0.347  -0.711  H291  6JR  45  
6JR  H301  H18  H  0  0  N  N  N   -8.494   7.361   2.937   7.558   3.933   0.669  H301  6JR  46  
6JR  H311  H19  H  0  0  N  N  N  -11.031   6.880   2.603   9.573   2.706  -0.030  H311  6JR  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6JR  N12  C22   SING  N  N   1  
6JR  N12  C24   SING  Y  N   2  
6JR  N12  C23   SING  Y  N   3  
6JR  C15  O02   SING  N  N   4  
6JR  C15  C18   SING  N  N   5  
6JR  C20  N09   SING  Y  N   6  
6JR  C20  N10   DOUB  Y  N   7  
6JR  C21  C22   SING  N  N   8  
6JR  C21  N10   SING  Y  N   9  
6JR  C21  C19   DOUB  Y  N  10  
6JR  C22  O08   DOUB  N  N  11  
6JR  C24  C25   DOUB  Y  N  12  
6JR  C26  C28   DOUB  Y  N  13  
6JR  C26  C25   SING  N  N  14  
6JR  C26  C27   SING  Y  N  15  
6JR  C28  C30   SING  Y  N  16  
6JR  P01  O03   SING  N  N  17  
6JR  P01  O04   SING  N  N  18  
6JR  P01  O06   SING  N  N  19  
6JR  P01  O07   DOUB  N  N  20  
6JR  O02  C17   SING  N  N  21  
6JR  O03  C14   SING  N  N  22  
6JR  O04  C18   SING  N  N  23  
6JR  O05  C16   SING  N  N  24  
6JR  N09  C17   SING  N  N  25  
6JR  N09  C19   SING  Y  N  26  
6JR  N11  C19   SING  N  N  27  
6JR  N11  C23   SING  N  N  28  
6JR  N13  C23   DOUB  Y  N  29  
6JR  N13  C25   SING  Y  N  30  
6JR  C14  C16   SING  N  N  31  
6JR  C16  C17   SING  N  N  32  
6JR  C27  C29   DOUB  Y  N  33  
6JR  C29  C31   SING  Y  N  34  
6JR  C30  C31   DOUB  Y  N  35  
6JR  C15  H151  SING  N  N  36  
6JR  C20  H201  SING  N  N  37  
6JR  C24  H241  SING  N  N  38  
6JR  C28  H281  SING  N  N  39  
6JR  O05  H051  SING  N  N  40  
6JR  O06  H061  SING  N  N  41  
6JR  N11  H3    SING  N  N  42  
6JR  C14  H141  SING  N  N  43  
6JR  C16  H161  SING  N  N  44  
6JR  C17  H171  SING  N  N  45  
6JR  C18  H181  SING  N  N  46  
6JR  C18  H182  SING  N  N  47  
6JR  C27  H271  SING  N  N  48  
6JR  C29  H291  SING  N  N  49  
6JR  C30  H301  SING  N  N  50  
6JR  C31  H311  SING  N  N  51  
6JR  C15  C14   SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6JR  SMILES            ACDLabs               12.01  "n54C(c3ncn(C2OC1COP(OC1C2O)(O)=O)c3Nc4nc(c5)c6ccccc6)=O"  
6JR  InChI             InChI                 1.03   "InChI=1S/C18H16N5O7P/c24-13-14-11(7-28-31(26,27)30-14)29-17(13)23-8-19-12-15(23)21-18-20-10(6-22(18)16(12)25)9-4-2-1-3-5-9/h1-6,8,11,13-14,17,24H,7H2,(H,20,21)(H,26,27)/t11-,13-,14-,17-/m1/s1"  
6JR  InChIKey          InChI                 1.03   TVSIKYJKUPRIDV-LSCFUAHRSA-N  
6JR  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H]1[C@@H]2O[P](O)(=O)OC[C@H]2O[C@H]1n3cnc4C(=O)n5cc(nc5Nc34)c6ccccc6"  
6JR  SMILES            CACTVS                3.385  "O[CH]1[CH]2O[P](O)(=O)OC[CH]2O[CH]1n3cnc4C(=O)n5cc(nc5Nc34)c6ccccc6"  
6JR  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "c1ccc(cc1)c2cn3c(n2)Nc4c(ncn4[C@H]5[C@@H]([C@H]6[C@H](O5)COP(=O)(O6)O)O)C3=O"  
6JR  SMILES            "OpenEye OEToolkits"  2.0.4  "c1ccc(cc1)c2cn3c(n2)Nc4c(ncn4C5C(C6C(O5)COP(=O)(O6)O)O)C3=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6JR  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-6-phenyl-3,4-dihydro-9H-imidazo[1,2-a]purin-9-one"  
6JR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "3-[(4~{a}~{R},6~{R},7~{R},7~{a}~{S})-2,7-bis(oxidanyl)-2-oxidanylidene-4~{a},6,7,7~{a}-tetrahydro-4~{H}-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-6-phenyl-4~{H}-imidazo[1,2-a]purin-9-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6JR  "Create component"  2016-04-19  RCSB  
6JR  "Modify synonyms"   2016-09-26  RCSB  
6JR  "Initial release"   2017-08-09  RCSB  
6JR  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6JR
_pdbx_chem_comp_synonyms.name        PET-cGMP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
