data_4UR
#

_chem_comp.id                                   4UR
_chem_comp.name                                 "3'2'-cGAMP"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H24 N10 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-amino-9-[(2S,5R,7R,8R,10R,12aR,14R,15R,15aS,16R)-7-(6-amino-9H-purin-9-yl)-2,10,15,16-tetrahydroxy-2,10-dioxidooctahydro-12H-5,8-methanofuro[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecin-14-yl]-1,9-dihydro-6H-purin-6-one"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-06-01
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       674.411
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4UR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5BQX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4UR  C21   C1   C  0  1  N  N  R  -23.322  20.818  -11.107   4.351  -2.433  -1.106  C21   4UR   1  
4UR  C22   C2   C  0  1  N  N  N  -22.269  21.700  -11.802   3.133  -2.866  -1.924  C22   4UR   2  
4UR  C28   C3   C  0  1  N  N  S  -19.191  22.699   -8.729  -1.033  -0.924  -0.527  C28   4UR   3  
4UR  N01   N1   N  0  1  N  N  N  -11.891  21.849   -8.226  -8.197  -1.667  -1.237  N01   4UR   4  
4UR  C02   C4   C  0  1  N  N  N  -13.079  21.126   -7.992  -7.510  -0.630  -0.659  C02   4UR   5  
4UR  N03   N2   N  0  1  N  N  N  -14.251  21.811   -7.819  -6.243  -0.797  -0.351  N03   4UR   6  
4UR  C04   C5   C  0  1  Y  N  N  -15.383  21.001   -7.580  -5.534   0.187   0.214  C04   4UR   7  
4UR  C05   C6   C  0  1  Y  N  N  -15.375  19.588   -7.511  -6.145   1.417   0.484  C05   4UR   8  
4UR  N06   N3   N  0  1  Y  N  N  -16.668  19.096   -7.253  -5.208   2.217   1.049  N06   4UR   9  
4UR  C07   C7   C  0  1  Y  N  N  -17.447  20.192   -7.162  -4.085   1.567   1.139  C07   4UR  10  
4UR  N08   N4   N  0  1  Y  N  N  -16.700  21.381   -7.342  -4.237   0.308   0.636  N08   4UR  11  
4UR  C09   C8   C  0  1  N  N  R  -17.288  22.738   -7.317  -3.203  -0.725   0.560  C09   4UR  12  
4UR  O10   O1   O  0  1  N  N  N  -18.462  22.834   -6.517  -2.187  -0.481   1.537  O10   4UR  13  
4UR  C11   C9   C  0  1  N  N  R  -19.613  23.151   -7.349  -0.913  -0.865   1.002  C11   4UR  14  
4UR  C12   C10  C  0  1  N  N  N  -20.876  22.433   -6.841   0.144   0.159   1.416  C12   4UR  15  
4UR  O13   O2   O  0  1  N  N  N  -20.724  21.046   -6.789   1.132  -0.465   2.237  O13   4UR  16  
4UR  P14   P1   P  0  1  N  N  N  -21.834  19.900   -6.436   2.504   0.259   2.677  P14   4UR  17  
4UR  O15   O3   O  0  1  N  N  N  -21.112  18.542   -6.506   2.355   1.724   2.519  O15   4UR  18  
4UR  O16   O4   O  0  1  N  N  N  -22.458  20.286   -5.141   2.822  -0.081   4.217  O16   4UR  19  
4UR  O17   O5   O  0  1  N  N  N  -22.942  19.765   -7.677   3.711  -0.258   1.745  O17   4UR  20  
4UR  C18   C11  C  0  1  N  N  R  -22.522  20.058   -8.956   3.516  -0.779   0.437  C18   4UR  21  
4UR  C19   C12  C  0  1  N  N  R  -23.410  21.127   -9.618   3.931  -2.270   0.371  C19   4UR  22  
4UR  O20   O6   O  0  1  N  N  N  -24.757  21.040   -9.190   5.044  -2.513   1.230  O20   4UR  23  
4UR  O23   O7   O  0  1  N  N  N  -21.002  21.405  -11.283   1.962  -2.192  -1.456  O23   4UR  24  
4UR  P24   P2   P  0  1  N  N  N  -19.779  22.578  -11.317   0.753  -2.937  -0.702  P24   4UR  25  
4UR  O25   O8   O  0  1  N  N  N  -20.304  23.647  -12.268   0.999  -2.931   0.759  O25   4UR  26  
4UR  O26   O9   O  0  1  N  N  N  -18.429  22.016  -11.616   0.668  -4.466  -1.209  O26   4UR  27  
4UR  O27   O10  O  0  1  N  N  N  -19.877  23.232   -9.797  -0.637  -2.201  -1.021  O27   4UR  28  
4UR  C29   C13  C  0  1  N  N  R  -17.739  23.136   -8.715  -2.532  -0.691  -0.822  C29   4UR  29  
4UR  O30   O11  O  0  1  N  N  N  -17.666  24.520   -8.993  -3.036  -1.749  -1.643  O30   4UR  30  
4UR  O31   O12  O  0  1  N  N  N  -22.980  19.414  -11.206   4.801  -1.147  -1.541  O31   4UR  31  
4UR  C32   C14  C  0  1  N  N  R  -22.760  18.872   -9.913   4.465  -0.130  -0.592  C32   4UR  32  
4UR  N33   N5   N  0  1  Y  N  N  -21.557  17.917  -10.021   3.789   0.973  -1.270  N33   4UR  33  
4UR  C34   C15  C  0  1  Y  N  N  -20.305  18.327  -10.486   3.106   0.899  -2.448  C34   4UR  34  
4UR  N35   N6   N  0  1  Y  N  N  -19.386  17.321  -10.523   2.630   2.069  -2.761  N35   4UR  35  
4UR  C36   C16  C  0  1  Y  N  N  -20.051  16.170  -10.066   2.975   2.966  -1.806  C36   4UR  36  
4UR  C37   C17  C  0  1  Y  N  N  -19.612  14.808   -9.864   2.749   4.339  -1.613  C37   4UR  37  
4UR  N38   N7   N  0  1  N  N  N  -18.303  14.353  -10.147   2.020   5.073  -2.532  N38   4UR  38  
4UR  N39   N8   N  0  1  Y  N  N  -20.522  13.886   -9.388   3.251   4.917  -0.526  N39   4UR  39  
4UR  C40   C18  C  0  1  Y  N  N  -21.813  14.332   -9.124   3.948   4.224   0.356  C40   4UR  40  
4UR  N41   N9   N  0  1  Y  N  N  -22.317  15.585   -9.268   4.185   2.937   0.216  N41   4UR  41  
4UR  C42   C19  C  0  1  Y  N  N  -21.411  16.524   -9.745   3.718   2.273  -0.836  C42   4UR  42  
4UR  C43   C20  C  0  1  N  N  N  -14.140  18.859   -7.696  -7.509   1.582   0.148  C43   4UR  43  
4UR  O44   O13  O  0  1  N  N  N  -13.911  17.661   -7.680  -8.083   2.636   0.366  O44   4UR  44  
4UR  N45   N10  N  0  1  N  N  N  -12.979  19.713   -7.944  -8.159   0.546  -0.426  N45   4UR  45  
4UR  H211  H1   H  0  0  N  N  N  -24.302  21.002  -11.571   5.147  -3.164  -1.188  H211  4UR  46  
4UR  H221  H2   H  0  0  N  N  N  -22.502  22.760  -11.623   3.297  -2.614  -2.973  H221  4UR  47  
4UR  H222  H3   H  0  0  N  N  N  -22.279  21.500  -12.884   3.004  -3.945  -1.836  H222  4UR  48  
4UR  H281  H4   H  0  0  N  N  N  -19.224  21.600   -8.762  -0.444  -0.130  -0.991  H281  4UR  49  
4UR  H012  H5   H  0  0  N  N  N  -11.913  22.848   -8.264  -9.132  -1.558  -1.474  H012  4UR  50  
4UR  H011  H6   H  0  0  N  N  N  -11.027  21.363   -8.354  -7.749  -2.510  -1.409  H011  4UR  51  
4UR  H071  H7   H  0  0  N  N  N  -18.510  20.166   -6.975  -3.169   1.965   1.550  H071  4UR  52  
4UR  H091  H8   H  0  0  N  N  N  -16.532  23.457   -6.969  -3.644  -1.708   0.730  H091  4UR  53  
4UR  H111  H9   H  0  0  N  N  N  -19.792  24.236   -7.356  -0.651  -1.850   1.394  H111  4UR  54  
4UR  H121  H10  H  0  0  N  N  N  -21.106  22.800   -5.830   0.625   0.572   0.530  H121  4UR  55  
4UR  H122  H11  H  0  0  N  N  N  -21.711  22.670   -7.516  -0.337   0.971   1.965  H122  4UR  56  
4UR  H1    H12  H  0  1  N  N  N  -22.314  19.598   -4.502   2.136   0.209   4.834  H1    4UR  57  
4UR  H181  H13  H  0  0  N  N  N  -21.467  20.367   -8.994   2.484  -0.664   0.112  H181  4UR  58  
4UR  H191  H14  H  0  0  N  N  N  -22.992  22.125   -9.421   3.103  -2.922   0.610  H191  4UR  59  
4UR  H201  H15  H  0  0  N  N  N  -24.808  21.233   -8.261   5.407  -3.406   1.160  H201  4UR  60  
4UR  H2    H16  H  0  1  N  N  N  -18.079  22.430  -12.396   1.470  -4.980  -1.043  H2    4UR  61  
4UR  H291  H17  H  0  0  N  N  N  -17.175  22.555   -9.460  -2.684   0.273  -1.304  H291  4UR  62  
4UR  H301  H18  H  0  0  N  N  N  -16.757  24.798   -8.985  -3.973  -1.662  -1.864  H301  4UR  63  
4UR  H321  H19  H  0  0  N  N  N  -23.639  18.306   -9.572   5.364   0.221  -0.093  H321  4UR  64  
4UR  H341  H20  H  0  0  N  N  N  -20.087  19.341  -10.787   2.980   0.001  -3.036  H341  4UR  65  
4UR  H381  H21  H  0  0  N  N  N  -18.238  13.376   -9.946   1.658   4.641  -3.321  H381  4UR  66  
4UR  H382  H22  H  0  0  N  N  N  -18.098  14.508  -11.113   1.870   6.021  -2.387  H382  4UR  67  
4UR  H401  H23  H  0  0  N  N  N  -22.503  13.586   -8.758   4.338   4.733   1.225  H401  4UR  68  
4UR  H451  H24  H  0  0  N  N  N  -12.086  19.286   -8.084  -9.094   0.637  -0.669  H451  4UR  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4UR  O25  P24   DOUB  N  N   1  
4UR  C22  O23   SING  N  N   2  
4UR  C22  C21   SING  N  N   3  
4UR  O26  P24   SING  N  N   4  
4UR  P24  O23   SING  N  N   5  
4UR  P24  O27   SING  N  N   6  
4UR  O31  C21   SING  N  N   7  
4UR  O31  C32   SING  N  N   8  
4UR  C21  C19   SING  N  N   9  
4UR  N35  C34   DOUB  Y  N  10  
4UR  N35  C36   SING  Y  N  11  
4UR  C34  N33   SING  Y  N  12  
4UR  N38  C37   SING  N  N  13  
4UR  C36  C37   DOUB  Y  N  14  
4UR  C36  C42   SING  Y  N  15  
4UR  N33  C32   SING  N  N  16  
4UR  N33  C42   SING  Y  N  17  
4UR  C32  C18   SING  N  N  18  
4UR  C37  N39   SING  Y  N  19  
4UR  O27  C28   SING  N  N  20  
4UR  C42  N41   DOUB  Y  N  21  
4UR  C19  O20   SING  N  N  22  
4UR  C19  C18   SING  N  N  23  
4UR  N39  C40   DOUB  Y  N  24  
4UR  N41  C40   SING  Y  N  25  
4UR  O30  C29   SING  N  N  26  
4UR  C18  O17   SING  N  N  27  
4UR  C28  C29   SING  N  N  28  
4UR  C28  C11   SING  N  N  29  
4UR  C29  C09   SING  N  N  30  
4UR  N01  C02   SING  N  N  31  
4UR  C02  N45   SING  N  N  32  
4UR  C02  N03   DOUB  N  N  33  
4UR  N45  C43   SING  N  N  34  
4UR  N03  C04   SING  N  N  35  
4UR  C43  O44   DOUB  N  N  36  
4UR  C43  C05   SING  N  N  37  
4UR  O17  P14   SING  N  N  38  
4UR  C04  C05   DOUB  Y  N  39  
4UR  C04  N08   SING  Y  N  40  
4UR  C05  N06   SING  Y  N  41  
4UR  C11  C12   SING  N  N  42  
4UR  C11  O10   SING  N  N  43  
4UR  N08  C09   SING  N  N  44  
4UR  N08  C07   SING  Y  N  45  
4UR  C09  O10   SING  N  N  46  
4UR  N06  C07   DOUB  Y  N  47  
4UR  C12  O13   SING  N  N  48  
4UR  O13  P14   SING  N  N  49  
4UR  O15  P14   DOUB  N  N  50  
4UR  P14  O16   SING  N  N  51  
4UR  C21  H211  SING  N  N  52  
4UR  C22  H221  SING  N  N  53  
4UR  C22  H222  SING  N  N  54  
4UR  C28  H281  SING  N  N  55  
4UR  N01  H012  SING  N  N  56  
4UR  N01  H011  SING  N  N  57  
4UR  C07  H071  SING  N  N  58  
4UR  C09  H091  SING  N  N  59  
4UR  C11  H111  SING  N  N  60  
4UR  C12  H121  SING  N  N  61  
4UR  C12  H122  SING  N  N  62  
4UR  O16  H1    SING  N  N  63  
4UR  C18  H181  SING  N  N  64  
4UR  C19  H191  SING  N  N  65  
4UR  O20  H201  SING  N  N  66  
4UR  O26  H2    SING  N  N  67  
4UR  C29  H291  SING  N  N  68  
4UR  O30  H301  SING  N  N  69  
4UR  C32  H321  SING  N  N  70  
4UR  C34  H341  SING  N  N  71  
4UR  N38  H381  SING  N  N  72  
4UR  N38  H382  SING  N  N  73  
4UR  C40  H401  SING  N  N  74  
4UR  N45  H451  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4UR  SMILES            ACDLabs               12.01  "C45C(C(OP(OCC3C(C(C(n2c1N=C(N)NC(c1nc2)=O)O3)O)OP(OC4)(=O)O)(O)=O)C(O5)n6c7c(nc6)c(ncn7)N)O"  
4UR  InChI             InChI                 1.03   "InChI=1S/C20H24N10O13P2/c21-14-8-15(24-3-23-14)29(4-25-8)19-13-10(31)6(40-19)1-38-44(34,35)42-12-7(2-39-45(36,37)43-13)41-18(11(12)32)30-5-26-9-16(30)27-20(22)28-17(9)33/h3-7,10-13,18-19,31-32H,1-2H2,(H,34,35)(H,36,37)(H2,21,23,24)(H3,22,27,28,33)/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1"  
4UR  InChIKey          InChI                 1.03   FAFONCPHZLORMH-INFSMZHSSA-N  
4UR  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@@H]5[C@H](O)[C@@H](CO[P](O)(=O)O[C@H]4[C@H]3O)O[C@H]5n6cnc7c(N)ncnc67"  
4UR  SMILES            CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](CO[P](O)(=O)O[CH]4[CH]3O)O[CH]5n6cnc7c(N)ncnc67"  
4UR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)COP(=O)(O[C@@H]5[C@@H](COP(=O)(O4)O)O[C@H]([C@@H]5O)n6cnc7c6N=C(NC7=O)N)O)O)N"  
4UR  SMILES            "OpenEye OEToolkits"  1.9.2  "c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5O)n6cnc7c6N=C(NC7=O)N)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          4UR
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "2-amino-9-[(2S,5R,7R,8R,10R,12aR,14R,15R,15aS,16R)-7-(6-amino-9H-purin-9-yl)-2,10,15,16-tetrahydroxy-2,10-dioxidooctahydro-12H-5,8-methanofuro[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecin-14-yl]-1,9-dihydro-6H-purin-6-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4UR  "Create component"  2015-06-01  RCSB  
4UR  "Initial release"   2015-06-24  RCSB  
4UR  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     4UR
_pdbx_chem_comp_synonyms.name        "2-amino-9-[(2S,5R,7R,8R,10R,12aR,14R,15R,15aS,16R)-7-(6-amino-9H-purin-9-yl)-2,10,15,16-tetrahydroxy-2,10-dioxidooctahydro-12H-5,8-methanofuro[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecin-14-yl]-1,9-dihydro-6H-purin-6-one"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
