data_YSQ
# 
_chem_comp.id                                    YSQ 
_chem_comp.name                                  "4,4'-{pyridine-2,6-diylbis[carbonyl-(1E)-hydrazin-2-yl-1-ylidene-(E)-methanylylidene]}bis(1-methylquinolin-1-ium)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H25 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    2 
_chem_comp.pdbx_initial_date                     2023-02-17 
_chem_comp.pdbx_modified_date                    2024-02-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.555 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YSQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G2N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YSQ C13  C1  C 0 1 Y N N N N N -11.102 -14.589 10.302 4.840  -3.062 -0.152 C13  YSQ 1  
YSQ C17  C2  C 0 1 Y N N N N N -9.391  -13.640 8.849  6.127  -1.000 0.062  C17  YSQ 2  
YSQ C20  C3  C 0 1 Y N N N N N -8.437  -13.109 6.241  8.613  0.197  0.270  C20  YSQ 3  
YSQ C21  C4  C 0 1 Y N N N N N -9.653  -13.782 6.385  8.550  -1.160 0.168  C21  YSQ 4  
YSQ C22  C5  C 0 1 N N N N N N -12.014 -15.139 6.753  8.432  -3.921 -0.033 C22  YSQ 5  
YSQ C28  C6  C 0 1 Y N N N N N -2.483  -9.496  12.097 -4.830 -1.672 -0.043 C28  YSQ 6  
YSQ C02  C7  C 0 1 N N N N N N -5.362  -10.211 15.792 -2.424 2.460  -0.070 C02  YSQ 7  
YSQ C03  C8  C 0 1 Y N N N N N -6.574  -10.962 16.321 -1.156 3.225  -0.075 C03  YSQ 8  
YSQ C04  C9  C 0 1 Y N N N N N -6.814  -10.965 17.704 -1.191 4.621  -0.083 C04  YSQ 9  
YSQ C05  C10 C 0 1 Y N N N N N -7.911  -11.703 18.166 -0.000 5.329  -0.089 C05  YSQ 10 
YSQ C06  C11 C 0 1 Y N N N N N -8.706  -12.394 17.238 1.191  4.622  -0.085 C06  YSQ 11 
YSQ C07  C12 C 0 1 Y N N N N N -8.376  -12.366 15.885 1.155  3.226  -0.077 C07  YSQ 12 
YSQ C08  C13 C 0 1 N N N N N N -9.260  -13.091 14.888 2.424  2.460  -0.073 C08  YSQ 13 
YSQ C11  C14 C 0 1 N N N N N N -9.157  -13.449 11.410 3.571  -0.911 -0.053 C11  YSQ 14 
YSQ C12  C15 C 0 1 Y N N N N N -9.890  -13.908 10.170 4.830  -1.671 -0.049 C12  YSQ 15 
YSQ C14  C16 C 0 1 Y N N N N N -11.772 -14.960 9.142  6.052  -3.739 -0.139 C14  YSQ 16 
YSQ C16  C17 C 0 1 Y N N N N N -10.121 -14.040 7.725  7.300  -1.793 0.060  C16  YSQ 17 
YSQ C18  C18 C 0 1 Y N N N N N -8.163  -12.953 8.644  6.226  0.391  0.170  C18  YSQ 18 
YSQ C19  C19 C 0 1 Y N N N N N -7.696  -12.692 7.351  7.456  0.972  0.272  C19  YSQ 19 
YSQ C27  C20 C 0 1 N N N N N N -3.741  -10.010 12.720 -3.571 -0.911 -0.049 C27  YSQ 20 
YSQ C29  C21 C 0 1 Y N N N N N -2.180  -9.733  10.715 -6.127 -1.000 0.064  C29  YSQ 21 
YSQ C30  C22 C 0 1 Y N N N N N -0.985  -9.272  10.246 -7.299 -1.794 0.063  C30  YSQ 22 
YSQ C31  C23 C 0 1 Y N N N N N -0.593  -9.470  8.905  -8.550 -1.160 0.165  C31  YSQ 23 
YSQ C32  C24 C 0 1 Y N N N N N -1.475  -10.107 8.053  -8.613 0.197  0.262  C32  YSQ 24 
YSQ C33  C25 C 0 1 Y N N N N N -2.676  -10.581 8.509  -7.456 0.972  0.263  C33  YSQ 25 
YSQ C34  C26 C 0 1 Y N N N N N -3.054  -10.392 9.830  -6.226 0.391  0.165  C34  YSQ 26 
YSQ C36  C27 C 0 1 Y N N N N N -0.392  -8.396  12.354 -6.051 -3.739 -0.136 C36  YSQ 27 
YSQ C37  C28 C 0 1 Y N N N N N -1.584  -8.829  12.929 -4.840 -3.063 -0.145 C37  YSQ 28 
YSQ C38  C29 C 0 1 N N N N N N 1.148   -8.143  10.563 -8.432 -3.921 -0.032 C38  YSQ 29 
YSQ N09  N1  N 0 1 N N N N N N -8.811  -13.063 13.545 2.397  1.112  -0.065 N09  YSQ 30 
YSQ N10  N2  N 0 1 N N N N N N -9.654  -13.639 12.567 3.597  0.388  -0.061 N10  YSQ 31 
YSQ N15  N3  N 1 1 Y N N N N N -11.288 -14.708 7.924  7.204  -3.123 -0.038 N15  YSQ 32 
YSQ N24  N4  N 0 1 Y N N N N N -7.346  -11.649 15.469 -0.000 2.579  -0.067 N24  YSQ 33 
YSQ N25  N5  N 0 1 N N N N N N -5.115  -10.355 14.405 -2.397 1.112  -0.062 N25  YSQ 34 
YSQ N26  N6  N 0 1 N N N N N N -3.946  -9.790  13.928 -3.596 0.388  -0.056 N26  YSQ 35 
YSQ N35  N7  N 1 1 Y N N N N N -0.130  -8.622  11.076 -7.204 -3.123 -0.034 N35  YSQ 36 
YSQ O01  O1  O 0 1 N N N N N N -4.615  -9.588  16.518 -3.488 3.047  -0.072 O01  YSQ 37 
YSQ O23  O2  O 0 1 N N N N N N -10.279 -13.660 15.114 3.488  3.047  -0.077 O23  YSQ 38 
YSQ H131 H1  H 0 0 N N N N N N -11.507 -14.820 11.276 3.912  -3.608 -0.236 H131 YSQ 39 
YSQ H201 H2  H 0 0 N N N N N N -8.061  -12.906 5.249  9.575  0.679  0.352  H201 YSQ 40 
YSQ H211 H3  H 0 0 N N N N N N -10.222 -14.098 5.523  9.457  -1.746 0.168  H211 YSQ 41 
YSQ H222 H4  H 0 0 N N N N N N -12.931 -15.662 7.061  8.686  -4.191 0.992  H222 YSQ 42 
YSQ H223 H5  H 0 0 N N N N N N -12.279 -14.263 6.143  8.280  -4.826 -0.620 H223 YSQ 43 
YSQ H221 H6  H 0 0 N N N N N N -11.385 -15.820 6.162  9.245  -3.339 -0.467 H221 YSQ 44 
YSQ H041 H7  H 0 0 N N N N N N -6.178  -10.420 18.385 -2.137 5.143  -0.086 H041 YSQ 45 
YSQ H051 H8  H 0 0 N N N N N N -8.142  -11.740 19.220 -0.000 6.409  -0.095 H051 YSQ 46 
YSQ H061 H9  H 0 0 N N N N N N -9.572  -12.946 17.572 2.136  5.144  -0.090 H061 YSQ 47 
YSQ H111 H10 H 0 0 N N N N N N -8.202  -12.955 11.314 2.626  -1.433 -0.049 H111 YSQ 48 
YSQ H141 H12 H 0 0 N N N N N N -12.719 -15.471 9.230  6.045  -4.816 -0.214 H141 YSQ 49 
YSQ H181 H13 H 0 0 N N N N N N -7.584  -12.629 9.496  5.335  1.001  0.173  H181 YSQ 50 
YSQ H191 H14 H 0 0 N N N N N N -6.762  -12.168 7.210  7.534  2.046  0.354  H191 YSQ 51 
YSQ H271 H15 H 0 0 N N N N N N -4.459  -10.562 12.132 -2.625 -1.433 -0.046 H271 YSQ 52 
YSQ H311 H17 H 0 0 N N N N N N 0.371   -9.133  8.554  -9.457 -1.746 0.166  H311 YSQ 53 
YSQ H321 H18 H 0 0 N N N N N N -1.213  -10.233 7.013  -9.576 0.680  0.341  H321 YSQ 54 
YSQ H331 H19 H 0 0 N N N N N N -3.335  -11.107 7.834  -7.534 2.047  0.341  H331 YSQ 55 
YSQ H341 H20 H 0 0 N N N N N N -4.013  -10.748 10.177 -5.335 1.001  0.166  H341 YSQ 56 
YSQ H361 H21 H 0 0 N N N N N N 0.330   -7.868  12.960 -6.045 -4.816 -0.215 H361 YSQ 57 
YSQ H371 H22 H 0 0 N N N N N N -1.803  -8.656  13.972 -3.912 -3.609 -0.231 H371 YSQ 58 
YSQ H382 H23 H 0 0 N N N N N N 1.704   -7.645  11.371 -8.785 -4.047 -1.056 H382 YSQ 59 
YSQ H381 H24 H 0 0 N N N N N N 1.734   -8.994  10.185 -8.230 -4.898 0.405  H381 YSQ 60 
YSQ H383 H25 H 0 0 N N N N N N 0.970   -7.429  9.746  -9.196 -3.411 0.554  H383 YSQ 61 
YSQ H091 H26 H 0 0 N N N N N N -7.933  -12.652 13.298 1.548  0.644  -0.062 H091 YSQ 62 
YSQ H251 H28 H 0 0 N N N N N N -5.751  -10.839 13.803 -1.548 0.644  -0.059 H251 YSQ 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YSQ C20 C21  DOUB Y N 1  
YSQ C20 C19  SING Y N 2  
YSQ C21 C16  SING Y N 3  
YSQ C22 N15  SING N N 4  
YSQ C19 C18  DOUB Y N 5  
YSQ C16 N15  DOUB Y N 6  
YSQ C16 C17  SING Y N 7  
YSQ N15 C14  SING Y N 8  
YSQ C32 C33  DOUB Y N 9  
YSQ C32 C31  SING Y N 10 
YSQ C33 C34  SING Y N 11 
YSQ C18 C17  SING Y N 12 
YSQ C17 C12  DOUB Y N 13 
YSQ C31 C30  DOUB Y N 14 
YSQ C14 C13  DOUB Y N 15 
YSQ C34 C29  DOUB Y N 16 
YSQ C12 C13  SING Y N 17 
YSQ C12 C11  SING N N 18 
YSQ C30 C29  SING Y N 19 
YSQ C30 N35  SING Y N 20 
YSQ C38 N35  SING N N 21 
YSQ C29 C28  SING Y N 22 
YSQ N35 C36  DOUB Y N 23 
YSQ C11 N10  DOUB N E 24 
YSQ C28 C27  SING N N 25 
YSQ C28 C37  DOUB Y N 26 
YSQ C36 C37  SING Y N 27 
YSQ N10 N09  SING N N 28 
YSQ C27 N26  DOUB N E 29 
YSQ N09 C08  SING N N 30 
YSQ N26 N25  SING N N 31 
YSQ N25 C02  SING N N 32 
YSQ C08 O23  DOUB N N 33 
YSQ C08 C07  SING N N 34 
YSQ N24 C07  DOUB Y N 35 
YSQ N24 C03  SING Y N 36 
YSQ C02 C03  SING N N 37 
YSQ C02 O01  DOUB N N 38 
YSQ C07 C06  SING Y N 39 
YSQ C03 C04  DOUB Y N 40 
YSQ C06 C05  DOUB Y N 41 
YSQ C04 C05  SING Y N 42 
YSQ C13 H131 SING N N 43 
YSQ C20 H201 SING N N 44 
YSQ C21 H211 SING N N 45 
YSQ C22 H222 SING N N 46 
YSQ C22 H223 SING N N 47 
YSQ C22 H221 SING N N 48 
YSQ C04 H041 SING N N 49 
YSQ C05 H051 SING N N 50 
YSQ C06 H061 SING N N 51 
YSQ C11 H111 SING N N 52 
YSQ C14 H141 SING N N 53 
YSQ C18 H181 SING N N 54 
YSQ C19 H191 SING N N 55 
YSQ C27 H271 SING N N 56 
YSQ C31 H311 SING N N 57 
YSQ C32 H321 SING N N 58 
YSQ C33 H331 SING N N 59 
YSQ C34 H341 SING N N 60 
YSQ C36 H361 SING N N 61 
YSQ C37 H371 SING N N 62 
YSQ C38 H382 SING N N 63 
YSQ C38 H381 SING N N 64 
YSQ C38 H383 SING N N 65 
YSQ N09 H091 SING N N 66 
YSQ N25 H251 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YSQ SMILES           ACDLabs              12.01 "O=C(N/N=C/c1cc[n+](C)c2ccccc21)c1cccc(n1)C(=O)N/N=C/c1cc[n+](C)c2ccccc21"                                                                                      
YSQ InChI            InChI                1.06  "InChI=1S/C29H23N7O2/c1-35-16-14-20(22-8-3-5-12-26(22)35)18-30-33-28(37)24-10-7-11-25(32-24)29(38)34-31-19-21-15-17-36(2)27-13-6-4-9-23(21)27/h3-19H,1-2H3/p+2" 
YSQ InChIKey         InChI                1.06  CVURQMOLKNHXLB-UHFFFAOYSA-P                                                                                                                                     
YSQ SMILES_CANONICAL CACTVS               3.385 "C[n+]1ccc(\C=N\NC(=O)c2cccc(n2)C(=O)N/N=C/c3cc[n+](C)c4ccccc34)c5ccccc15"                                                                                      
YSQ SMILES           CACTVS               3.385 "C[n+]1ccc(C=NNC(=O)c2cccc(n2)C(=O)NN=Cc3cc[n+](C)c4ccccc34)c5ccccc15"                                                                                          
YSQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[n+]1c2c(c(cc1)/C=N/NC(=O)c3nc(ccc3)C(=O)N/N=C/c4c5c([n+](cc4)C)cccc5)cccc2"                                                                                  
YSQ SMILES           "OpenEye OEToolkits" 2.0.7 "C[n+]1ccc(c2c1cccc2)C=NNC(=O)c3cccc(n3)C(=O)NN=Cc4cc[n+](c5c4cccc5)C"                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YSQ "SYSTEMATIC NAME" ACDLabs              12.01 "4,4'-{pyridine-2,6-diylbis[carbonyl-(1E)-hydrazin-2-yl-1-ylidene-(E)-methanylylidene]}bis(1-methylquinolin-1-ium)" 
YSQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}2,~{N}6-bis[(~{E})-(1-methylquinolin-1-ium-4-yl)methylideneamino]pyridine-2,6-dicarboxamide"                   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YSQ "Create component" 2023-02-17 RCSB 
YSQ "Initial release"  2024-02-14 RCSB 
# 
